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Chapter 11 Autophagy in Neurite Injury and Neurodegeneration

Chu, Charleen T., Plowey, Edward D., Dagda, Ruben K., Hickey, Robert W., Cherra, Salvatore J., Clark, Robert S.B.·2009·Methods in Enzymology

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Research works printed but not linked: 85

  1. Adhami, 2006, Cerebral ischemia‐hypoxia induces intravascular coagulation and autophagy, Am. J. Pathol., 169, 566, 10.2353/ajpath.2006.051066 · DOI · Paper page
  2. Anglade, 1997, Apoptosis and autophagy in nigral neurons of patients with Parkinson's disease, Histol. Histopathol., 12, 25
  3. Bilsland, 2002, Caspase inhibitors attenuate 1‐methyl‐4‐phenylpyridinium toxicity in primary cultures of mesencephalic dopaminergic neurons, J. Neurosci., 22, 2637, 10.1523/JNEUROSCI.22-07-02637.2002 · DOI
  4. Boland, 2006, Neuronal macroautophagy: From development to degeneration, Mol. Aspects. Med., 27, 503, 10.1016/j.mam.2006.08.009 · DOI
  5. Charych, 2006, Activity‐independent regulation of dendrite patterning by postsynaptic density protein PSD‐95, J. Neurosci., 26, 10164, 10.1523/JNEUROSCI.2379-06.2006 · DOI
  6. Cherra, 2008, Autophagy in neuroprotection and neurodegeneration: A question of balance, Future Neurol., 3, 309, 10.2217/14796708.3.3.309 · DOI
  7. Chiesa, 2005, Bax deletion prevents neuronal loss but not neurological symptoms in a transgenic model of inherited prion disease, Proc. Natl. Acad. Sci. USA, 102, 238, 10.1073/pnas.0406173102 · DOI
  8. Chu, 2007, Beclin 1‐independent pathway of damage‐induced mitophagy and autophagic stress: Implications for neurodegeneration and cell death, Autophagy, 3, 663, 10.4161/auto.4625 · DOI
  9. Chu, 2005, Apoptosis inducing factor mediates caspase‐independent 1‐methyl‐4‐phenylpyridinium toxicity in dopaminergic cells, J. Neurochem., 94, 1685, 10.1111/j.1471-4159.2005.03329.x · DOI
  10. Clark, 2008, Autophagy is increased in mice after traumatic brain injury and is detectable in human brain after trauma and critical illness, Autophagy, 4, 88, 10.4161/auto.5173 · DOI
  11. Clinton, 1993, Synaptic degeneration is the primary neuropathological feature in prion disease: A preliminary study, Neuroreport., 4, 65, 10.1097/00001756-199301000-00017 · DOI
  12. Cookson, 2008, Cell systems and the toxic mechanism(s) of α‐synuclein, Exp. Neurol., 209, 5, 10.1016/j.expneurol.2007.05.022 · DOI
  13. Dagda, 2008, Mitochondrially localized ERK2 regulates mitophagy and autophagic cell stress, Autophagy, 4, 770, 10.4161/auto.6458 · DOI
  14. Di Filippo, 2007, Plastic abnormalities in experimental Huntington's disease, Curr. Opin. Pharmacol., 7, 106, 10.1016/j.coph.2006.08.010 · DOI
  15. DiFiglia, 1997, Aggregation of huntingtin in neuronal intranuclear inclusions and dystrophic neurites in brain, Science, 277, 1990, 10.1126/science.277.5334.1990 · DOI · Paper page
  16. Diskin, 2005, Closed head injury induces upregulation of Beclin 1 at the cortical site of injury, J. Neurotrauma., 22, 750, 10.1089/neu.2005.22.750 · DOI
  17. Dominguez, 2004, Morphological effects of estrogen on cholinergic neurons in vitro involves activation of extracellular signal‐regulated kinases, J. Neurosci., 24, 982, 10.1523/JNEUROSCI.2586-03.2004 · DOI
  18. Du, 2004, Innate gender‐based proclivity in response to cytotoxicity and programmed cell death pathway, J. Biol. Chem., 279, 38563, 10.1074/jbc.M405461200 · DOI
  19. Durukan, 2007, Acute ischemic stroke: Overview of major experimental rodent models, pathophysiology, and therapy of focal cerebral ischemia, Pharmacol. Biochem. Behav., 87, 179, 10.1016/j.pbb.2007.04.015 · DOI
  20. Encinas, 2000, Sequential treatment of SH‐SY5Y cells with retinoic acid and brain‐derived neurotrophic factor gives rise to fully differentiated, neurotrophic factor‐dependent, human neuron‐like cells, J. Neurochem., 75, 991, 10.1046/j.1471-4159.2000.0750991.x · DOI
  21. Fiala, 2007, Mitochondrial degeneration in dystrophic neurites of senile plaques may lead to extracellular deposition of fine filaments, Brain. Struct. Funct., 212, 195, 10.1007/s00429-007-0153-1 · DOI
  22. Fournier, 2008, Cellular prion protein electron microscopy: Attempts/limits and clues to a synaptic trait. Implications in neurodegeneration process, Cell Tissue Res., 332, 1, 10.1007/s00441-007-0565-5 · DOI
  23. Gentleman, 1993, β‐amyloid precursor protein (βAPP) as a marker for axonal injury after head injury, Neurosci. Lett., 160, 139, 10.1016/0304-3940(93)90398-5 · DOI
  24. Gerecke, 2004, Neuregulin‐1β induces neurite extension and arborization in cultured hippocampal neurons, Mol. Cell Neurosci., 27, 379, 10.1016/j.mcn.2004.08.001 · DOI
  25. Ginsberg, 1989, Rodent models of cerebral ischemia, Stroke, 20, 1627, 10.1161/01.STR.20.12.1627 · DOI
  26. Gomez-Santos, 2003, Dopamine induces autophagic cell death and α‐synuclein increase in human neuroblastoma SH‐SY5Y cells, J. Neurosci. Res., 73, 341, 10.1002/jnr.10663 · DOI
  27. Gutierrez, 2007, A fast and accurate procedure for deriving the Sholl profile in quantitative studies of neuronal morphology, J. Neurosci. Methods, 163, 24, 10.1016/j.jneumeth.2007.02.002 · DOI
  28. Hynds, 2002, L‐ and D‐threo‐1‐phenyl‐2‐decanoylamino‐3‐morpholino‐1‐propanol (PDMP) inhibit neurite outgrowth from SH‐SY5Y cells, Neuroscience, 114, 731, 10.1016/S0306-4522(02)00302-0 · DOI
  29. Ironside, 1998, Prion diseases in man, J. Pathol., 186, 227, 10.1002/(SICI)1096-9896(1998110)186:3<227::AID-PATH174>3.0.CO;2-3 · DOI · Paper page
  30. Ito, 2006, Temporal profiles of axon terminals, synapses and spines in the ischemic penumbra of the cerebral cortex: Ultrastructure of neuronal remodeling, Stroke, 37, 2134, 10.1161/01.STR.0000231875.96714.b1 · DOI
  31. Iwai-Kanai, 2008, A method to measure cardiac autophagic flux in vivo, Autophagy, 4, 322, 10.4161/auto.5603 · DOI
  32. Jeffrey, 2000, Synapse loss associated with abnormal PrP precedes neuronal degeneration in the scrapie‐infected murine hippocampus, Neuropathol. Appl. Neurobiol., 26, 41, 10.1046/j.1365-2990.2000.00216.x · DOI
  33. Katayama, 2008, GFP‐like proteins stably accumulate in lysosomes, Cell Struct. Funct., 33, 1, 10.1247/csf.07011 · DOI
  34. Kay, 2006, Parkinson's disease and LRRK2: Frequency of a common mutation in U.S. movement disorder clinics, Mov. Disord., 21, 519, 10.1002/mds.20751 · DOI
  35. Kim, 1997, Experimental models of cerebral ischemia, Acta Anaesthesiol. Scand. Suppl., 111, 91
  36. Kimura, 1994, Neurite outgrowth of PC12 cells is suppressed by wortmannin, a specific inhibitor of phosphatidylinositol 3‐kinase, J. Biol. Chem., 269, 18961, 10.1016/S0021-9258(17)32260-3 · DOI
  37. Kiselyov, 2007, Autophagy, mitochondria and cell death in lysosomal storage diseases, Autophagy, 3, 259, 10.4161/auto.3906 · DOI
  38. Kissova, 2004, Uth1p is involved in the autophagic degradation of mitochondria, J. Biol. Chem., 279, 39068, 10.1074/jbc.M406960200 · DOI
  39. Kitada, 2007, Impaired dopamine release and synaptic plasticity in the striatum of PINK1‐deficient mice, Proc. Natl. Acad. Sci. USA, 104, 11441, 10.1073/pnas.0702717104 · DOI
  40. Kitamoto, 1992, Abnormal isoform of prion proteins accumulates in the synaptic structures of the central nervous system in patients with Creutzfeldt‐Jakob disease, Am. J. Pathol., 140, 1285
  41. Klionsky, 2008, Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes, Autophagy, 4, 151, 10.4161/auto.5338 · DOI · Paper page
  42. Koike, 2008, Inhibition of autophagy prevents hippocampal pyramidal neuron death after hypoxic‐ischemic injury, Am. J. Pathol., 172, 454, 10.2353/ajpath.2008.070876 · DOI · Paper page
  43. Lach, 1992, Caudate nucleus pathology in Parkinson's disease: Ultrastructural and biochemical findings in biopsy material, Acta Neuropathol., 83, 352, 10.1007/BF00713525 · DOI
  44. Lagreze, 2005, The peptides ADNF‐9 and NAP increase survival and neurite outgrowth of rat retinal ganglion cells in vitro, Invest. Ophthalmol. Vis. Sci., 46, 933, 10.1167/iovs.04-0766 · DOI
  45. Lai, 2008, Autophagy is increased after traumatic brain injury in mice and is partially inhibited by the antioxidant gamma-glutamylcysteinyl ethyl ester, J. Cereb. Blood Flow Metab., 28, 540, 10.1038/sj.jcbfm.9600551 · DOI
  46. Larsen, 2002, Methamphetamine-induced degeneration of dopaminergic neurons involves autophagy and upregulation of dopamine synthesis, J. Neurosci., 22, 8951, 10.1523/JNEUROSCI.22-20-08951.2002 · DOI
  47. Liberski, 2002, How do neurons degenerate in prion diseases or transmissible spongiform encephalopathies (TSEs): Neuronal autophagy revisited, Acta Neurobiol. Exp. (Wars)., 62, 141, 10.55782/ane-2002-1432 · DOI
  48. Liu, 2008, Changes in autophagy after traumatic brain injury, J. Cereb. Blood Flow Metab., 28, 674, 10.1038/sj.jcbfm.9600587 · DOI
  49. Machado-Salas, 1990, Degenerative ultrastructural changes observed in the neuropil of caudate nuclei from Parkinson's disease patients, Stereotact. Funct. Neurosurg, 54-55, 297, 10.1159/000100226 · DOI
  50. MacLeod, 2006, The familial Parkinsonism gene LRRK2 regulates neurite process morphology, Neuron., 52, 587, 10.1016/j.neuron.2006.10.008 · DOI
  51. Masliah, 2001, Altered expression of synaptic proteins occurs early during progression of Alzheimer's disease, Neurology., 56, 127, 10.1212/WNL.56.1.127 · DOI · Paper page
  52. Meijering, 2004, Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images, Cytometry A., 58, 167, 10.1002/cyto.a.20022 · DOI
  53. Munafo, 2001, A novel assay to study autophagy: Regulation of autophagosome vacuole size by amino acid deprivation, J. Cell Sci., 114, 3619, 10.1242/jcs.114.20.3619 · DOI · Paper page
  54. Nitatori, 1995, Delayed neuronal death in the CA1 pyramidal cell layer of the gerbil hippocampus following transient ischemia is apoptosis, J. Neurosci., 15, 1001, 10.1523/JNEUROSCI.15-02-01001.1995 · DOI
  55. Nixon, 2007, Autophagy, amyloidogenesis and Alzheimer disease, J. Cell Sci., 120, 4081, 10.1242/jcs.019265 · DOI · Paper page
  56. Nixon, 2005, Extensive involvement of autophagy in Alzheimer disease: An immuno-electron microscopy study, J. Neuropathol. Exp. Neurol., 64, 113, 10.1093/jnen/64.2.113 · DOI · Paper page
  57. Orr, 2002, Lurcher, nPIST, and autophagy, Neuron., 35, 813, 10.1016/S0896-6273(02)00871-1 · DOI
  58. Pahlman, 1984, Retinoic acid-induced differentiation of cultured human neuroblastoma cells: A comparison with phorbolester-induced differentiation, Cell Differ., 14, 135, 10.1016/0045-6039(84)90038-1 · DOI
  59. Pigino, 2003, Alzheimer's presenilin 1 mutations impair kinesin-based axonal transport, J. Neurosci., 23, 4499, 10.1523/JNEUROSCI.23-11-04499.2003 · DOI
  60. Pigino, 2001, Presenilin-1 mutations reduce cytoskeletal association, deregulate neurite growth, and potentiate neuronal dystrophy and tau phosphorylation, J. Neurosci., 21, 834, 10.1523/JNEUROSCI.21-03-00834.2001 · DOI
  61. Plowey, 2008, Role of autophagy in G2019S-LRRK2-associated neurite shortening in differentiated SH-SY5Y cells, J. Neurochem., 105, 1048, 10.1111/j.1471-4159.2008.05217.x · DOI
  62. Price, 2006, A simple, flexible, nonfluorescent system for the automated screening of neurite outgrowth, J. Biomol. Screen., 11, 155, 10.1177/1087057105283344 · DOI
  63. Rami, 2008, Focal cerebral ischemia induces upregulation of Beclin 1 and autophagy-like cell death, Neurobiol. Dis., 29, 132, 10.1016/j.nbd.2007.08.005 · DOI
  64. Rodriguez-Enriquez, 2004, Role of mitochondrial permeability transition pores in mitochondrial autophagy, Int. J. Biochem. Cell Biol., 36, 2463, 10.1016/j.biocel.2004.04.009 · DOI
  65. Ross, 1983, Coordinate morphological and biochemical interconversion of human neuroblastoma cells, J. Natl. Cancer Inst., 71, 741
  66. Rowland, 2006, Presynaptic terminals independently regulate synaptic clustering and autophagy of GABAA receptors in Caenorhabditis elegans, J. Neurosci., 26, 1711, 10.1523/JNEUROSCI.2279-05.2006 · DOI · Paper page
  67. Rudnicki, 2008, A comparison of huntington disease and huntington disease-like 2 neuropathology, J. Neuropathol. Exp. Neurol., 67, 366, 10.1097/NEN.0b013e31816b4aee · DOI
  68. Satchell, 2003, A dual role for poly-ADP-ribosylation in spatial memory acquisition after traumatic brain injury in mice involving NAD+ depletion and ribosylation of 14-3-3gamma, J. Neurochem., 85, 697, 10.1046/j.1471-4159.2003.01707.x · DOI
  69. Scheff, 2006, Hippocampal synaptic loss in early Alzheimer's disease and mild cognitive impairment, Neurobiol. Aging., 27, 1372, 10.1016/j.neurobiolaging.2005.09.012 · DOI · Paper page
  70. Sikorska, 2004, Autophagy is a part of ultrastructural synaptic pathology in Creutzfeldt-Jakob disease: A brain biopsy study, Int. J. Biochem. Cell Biol., 36, 2563, 10.1016/j.biocel.2004.04.014 · DOI
  71. Spillantini, 1997, Alpha-synuclein in Lewy bodies, Nature., 388, 839, 10.1038/42166 · DOI · Paper page
  72. St Croix, 2006, Intravital fluorescence microscopy in pulmonary research, Adv. Drug. Deliv. Rev., 58, 834, 10.1016/j.addr.2006.07.007 · DOI
  73. Tanida, 2008, Consideration about negative controls for LC3 and expression vectors for four colored fluorescent protein-LC3 negative controls, Autophagy, 4, 131, 10.4161/auto.5233 · DOI
  74. Traystman, 2003, Animal models of focal and global cerebral ischemia, Ilar J., 44, 85, 10.1093/ilar.44.2.85 · DOI · Paper page
  75. Ventruti, 2007, Autophagy and neurodegeneration, Curr. Neurol. Neurosci. Rep., 7, 443, 10.1007/s11910-007-0068-5 · DOI
  76. Wishart, 2006, Synaptic vulnerability in neurodegenerative disease, J. Neuropathol. Exp. Neurol., 65, 733, 10.1097/01.jnen.0000228202.35163.c4 · DOI
  77. Xue, 1999, Autophagy is activated by apoptotic signalling in sympathetic neurons: An alternative mechanism of death execution, Mol. Cell Neurosci., 14, 180, 10.1006/mcne.1999.0780 · DOI
  78. Xue, 2001, Mitochondria are selectively eliminated from eukaryotic cells after blockade of caspases during apoptosis, Curr. Biol., 11, 361, 10.1016/S0960-9822(01)00100-2 · DOI
  79. Yang, 2007, Induction of autophagy in neurite degeneration of mouse superior cervical ganglion neurons, Eur. J. Neurosci., 26, 2979, 10.1111/j.1460-9568.2007.05914.x · DOI
  80. Yue, 2008, Neuronal autophagy: Going the distance to the axon, Autophagy, 4, 94, 10.4161/auto.5202 · DOI
  81. Zeng, 2008, Roles of autophagy and mTOR signaling in neuronal differentiation of mouse neuroblastoma cells, Cell Signal., 20, 659, 10.1016/j.cellsig.2007.11.015 · DOI
  82. Zhu, 2005, The influence of age on apoptotic and other mechanisms of cell death after cerebral hypoxia-ischemia, Cell Death Differ., 12, 162, 10.1038/sj.cdd.4401545 · DOI
  83. Zhu, 2006, Different apoptotic mechanisms are activated in male and female brains after neonatal hypoxia-ischaemia, J. Neurochem., 96, 1016, 10.1111/j.1471-4159.2005.03639.x · DOI
  84. Zhu, 2003, Localization of phosphorylated ERK/MAP kinases to mitochondria and autophagosomes in Lewy body diseases, Brain Pathol., 13, 473, 10.1111/j.1750-3639.2003.tb00478.x · DOI
  85. Zhu, 2007, Regulation of autophagy by extracellular signal-regulated protein kinases during 1-methyl-4-phenylpyridinium-induced cell death, Am. J. Pathol., 170, 75, 10.2353/ajpath.2007.060524 · DOI

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Metadata

Authors
Chu, C. T., Plowey, E. D., Dagda, R. K., Hickey, R. W., Cherra, S. J., & Clark, R. S. B.
Venue
Methods in Enzymology
Publisher
Elsevier
Published
2009
Pages
217-249
ISSN
0076-6879
Cited by
107
References
9
Language
en

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