Recent Developments in Gas-Phase Ion/Ion Reactions for Analytical Mass Spectrometry

Electrospray Ionization for Mass Spectrometry of Large Biomolecules

Fenn, J. B., Mann, M., Meng, C. K., Wong, S. F., & Whitehouse, C. M. (1989) · Science · doi:10.1126/science.2675315 · Cited by 7,634 · see citing works

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

Syka, J. E. P., Coon, J. J., Schroeder, M. J., Shabanowitz, J., & Hunt, D. F. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0402700101 · Cited by 2,370 · see citing works

Electrospray ion source: another variation on the free-jet theme

Yamashita, M., & Fenn, J. (1984) · The Journal of Physical Chemistry · doi:10.1021/j150664a002 · Cited by 1,800 · see citing works

Native Mass Spectrometry: What is in the Name?

Leney, A. C., & Heck, A. J. R. (2017) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-016-1545-3 · Cited by 602 · see citing works

Performance Characteristics of Electron Transfer Dissociation Mass Spectrometry

Good, D. M., Wirtala, M., McAlister, G. C., & Coon, J. J. (2007) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m700073-mcp200 · Cited by 397 · see citing works

Protein identification using sequential ion/ion reactions and tandem mass spectrometry

Coon, J. J., Ueberheide, B., Syka, J. E. P., Dryhurst, D. D., Ausio, J., Shabanowitz, J., & Hunt, D. F. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0503189102 · Cited by 373 · see citing works

The role of mass spectrometry in structure elucidation of dynamic protein complexes.

Sharon, M., & Robinson, C. (2007) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.76.061005.090816 · Cited by 364 · see citing works

Native protein mass spectrometry: from intact oligomers to functional machineries

van den Heuvel, R. H. H., & Heck, A. J. R. (2004) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2004.08.006 · Cited by 303 · see citing works

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

Wenger, C. D., Lee, M. V., Hebert, A. S., McAlister, G. C., Phanstiel, D. H., Westphall, M. S., & Coon, J. J. (2011) · Nature Methods · doi:10.1038/nmeth.1716 · Cited by 244 · see citing works

Principles of electron capture and transfer dissociation mass spectrometry applied to peptide and protein structure analysis

Zhurov, K. O., Fornelli, L., Wodrich, M. D., Laskay, Ü. A., & Tsybin, Y. O. (2013) · Chemical Society Reviews · doi:10.1039/c3cs35477f · Cited by 226 · see citing works

Peptide Radicals and Cation Radicals in the Gas Phase

Tureček, F., & Julian, R. R. (2013) · Chemical Reviews · doi:10.1021/cr400043s · Cited by 215 · see citing works

Anion dependence in the partitioning between proton and electron transfer in ion/ion reactions

Coon, J. J., Syka, J. E. P., Schwartz, J. C., Shabanowitz, J., & Hunt, D. F. (2004) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2004.05.005 · Cited by 185 · see citing works

The Role of Electron Transfer Dissociation in Modern Proteomics

Riley, N. M., & Coon, J. J. (2017) · Analytical Chemistry · doi:10.1021/acs.analchem.7b04810 · Cited by 180 · see citing works

From Protein Complexes to Subunit Backbone Fragments: A Multi-stage Approach to Native Mass Spectrometry

Belov, M. E., Damoc, E., Denisov, E., Compton, P. D., Horning, S., Makarov, A. A., & Kelleher, N. L. (2013) · Analytical Chemistry · doi:10.1021/ac4029328 · Cited by 175 · see citing works

Defining the Stoichiometry and Cargo Load of Viral and Bacterial Nanoparticles by Orbitrap Mass Spectrometry

Snijder, J., van de Waterbeemd, M., Damoc, E., Denisov, E., Grinfeld, D., Bennett, A., Agbandje-McKenna, M., Makarov, A., & Heck, A. J. R. (2014) · Journal of the American Chemical Society · doi:10.1021/ja502616y · Cited by 168 · see citing works

Controlling Charge States of Large Ions

Scalf, M., Westphall, M. S., Krause, J., Kaufman, S. L., & Smith, L. M. (1999) · Science · doi:10.1126/science.283.5399.194 · Cited by 168 · see citing works

High-fidelity mass analysis unveils heterogeneity in intact ribosomal particles

van de Waterbeemd, M., Fort, K. L., Boll, D., Reinhardt-Szyba, M., Routh, A., Makarov, A., & Heck, A. J. R. (2017) · Nature Methods · doi:10.1038/nmeth.4147 · Cited by 168 · see citing works

Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

Phanstiel, D., Brumbaugh, J., Berggren, W. T., Conard, K., Feng, X., Levenstein, M. E., McAlister, G. C., Thomson, J. A., & Coon, J. J. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0710515105 · Cited by 166 · see citing works

Recent developments in the ion/ion chemistry of high‐mass multiply charged ions

Pitteri, S. J., & McLuckey, S. A. (2005) · Mass Spectrometry Reviews · doi:10.1002/mas.20048 · Cited by 159 · see citing works

Electron Transfer versus Proton Transfer in Gas-Phase Ion/Ion Reactions of Polyprotonated Peptides

Gunawardena, H. P., He, M., Chrisman, P. A., Pitteri, S. J., Hogan, J. M., Hodges, B. D. M., & McLuckey, S. A. (2005) · Journal of the American Chemical Society · doi:10.1021/ja0526057 · Cited by 156 · see citing works

Electron Transfer Ion/Ion Reactions in a Three-Dimensional Quadrupole Ion Trap: Reactions of Doubly and Triply Protonated Peptides with SO2•-

Pitteri, S. J., Chrisman, P. A., Hogan, J. M., & McLuckey, S. A. (2005) · Analytical Chemistry · doi:10.1021/ac0483872 · Cited by 154 · see citing works

Exploring an Orbitrap Analyzer for the Characterization of Intact Antibodies by Native Mass Spectrometry

Rosati, S., Rose, R., Thompson, N., van Duijn, E., Damoc, E., Denisov, E. V., Makarov, A., & Heck, A. J. R. (2012) · Angewandte Chemie International Edition · doi:10.1002/anie.201206745 · Cited by 153 · see citing works

Charge-State-Dependent Sequence Analysis of Protonated Ubiquitin Ions via Ion Trap Tandem Mass Spectrometry

Reid, G. E., Wu, J., Chrisman, P. A., Wells, J. M., & McLuckey, S. A. (2001) · Analytical Chemistry · doi:10.1021/ac0101095 · Cited by 152 · see citing works

A Proteomics Grade Electron Transfer Dissociation-Enabled Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer

McAlister, G. C., Berggren, W. T., Griep‐Raming, J., Horning, S. R., Makarov, A., Phanstiel, D., Stafford, G. C., Swaney, D. L., Syka, J. E. P., Zabrouskov, V., et al. (2008) · Journal of Proteome Research · doi:10.1021/pr800264t · Cited by 145 · see citing works

Ion/Ion Proton Transfer Reactions for Protein Mixture Analysis

Stephenson, J. L., & McLuckey, S. A. (1996) · Analytical Chemistry · doi:10.1021/ac9605657 · Cited by 145 · see citing works

Charge Reduction Electrospray Mass Spectrometry

Scalf, M., Westphall, M. S., & Smith, L. M. (1999) · Analytical Chemistry · doi:10.1021/ac990878c · Cited by 144 · see citing works

Simplification of Product Ion Spectra Derived from Multiply Charged Parent Ions via Ion/Ion Chemistry

Stephenson, J. L., & McLuckey, S. A. (1998) · Analytical Chemistry · doi:10.1021/ac9802832 · Cited by 141 · see citing works

Electron transfer dissociation mass spectrometry in proteomics

Kim, M., & Pandey, A. (2012) · PROTEOMICS · doi:10.1002/pmic.201100517 · Cited by 123 · see citing works

Expanding the structural analysis capabilities on an Orbitrap-based mass spectrometer for large macromolecular complexes

Fort, K. L., van de Waterbeemd, M., Boll, D., Reinhardt-Szyba, M., Belov, M. E., Sasaki, E., Zschoche, R., Hilvert, D., Makarov, A. A., & Heck, A. J. R. (2018) · The Analyst · doi:10.1039/c7an01629h · Cited by 122 · see citing works

Ion Parking during Ion/Ion Reactions in Electrodynamic Ion Traps

McLuckey, S. A., Reid, G. E., & Wells, J. M. (2001) · Analytical Chemistry · doi:10.1021/ac0109671 · Cited by 115 · see citing works

Gas-Phase Concentration, Purification, and Identification of Whole Proteins from Complex Mixtures

Reid, G. E., Shang, H., Hogan, J. M., Lee, G. U., & McLuckey, S. A. (2002) · Journal of the American Chemical Society · doi:10.1021/ja025966k · Cited by 95 · see citing works

How far can we go with structural mass spectrometry of protein complexes?

Sharon, M. (2010) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2009.12.017 · Cited by 93 · see citing works

Charge dependence of protonated insulin decompositions

Wells, J. M., Stephenson, J. L., & McLuckey, S. A. (2000) · International Journal of Mass Spectrometry · doi:10.1016/s1387-3806(00)00389-4 · Cited by 93 · see citing works

Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry

Chi, A., Bai, D. L., Geer, L. Y., Shabanowitz, J., & Hunt, D. F. (2006) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2006.09.030 · Cited by 89 · see citing works

Ion/Ion Proton-Transfer Kinetics: Implications for Analysis of Ions Derived from Electrospray of Protein Mixtures

McLuckey, S. A., Stephenson, J. L., & Asano, K. G. (1998) · Analytical Chemistry · doi:10.1021/ac9710137 · Cited by 88 · see citing works

Selective Disulfide Bond Cleavage in Gold(I) Cationized Polypeptide Ions Formed via Gas-Phase Ion/Ion Cation Switching

Gunawardena, H. P., O’Hair, R. A. J., & McLuckey, S. A. (2006) · Journal of Proteome Research · doi:10.1021/pr0602794 · Cited by 87 · see citing works

A new approach for the study of gas-phase ion-ion reactions using electrospray ionization

Loo, R. R. O., Udseth, H. R., & Smith, R. (1992) · Journal of the American Society for Mass Spectrometry · doi:10.1016/1044-0305(92)87082-a · Cited by 85 · see citing works

Electrospray Ionization Mass Spectrometry of Highly Heterogeneous Protein Systems: Protein Ion Charge State Assignment via Incomplete Charge Reduction

Abzalimov, R. R., & Kaltashov, I. A. (2010) · Analytical Chemistry · doi:10.1021/ac101848z · Cited by 85 · see citing works

Folding of Protein Ions in the Gas Phase after Cation-to-Anion Proton-Transfer Reactions

Laszlo, K. J., Munger, E. B., & Bush, M. F. (2016) · Journal of the American Chemical Society · doi:10.1021/jacs.6b04282 · Cited by 85 · see citing works

ETD in a Traveling Wave Ion Guide at Tuned Z-Spray Ion Source Conditions Allows for Site-Specific Hydrogen/Deuterium Exchange Measurements

Rand, K. D., Pringle, S. D., Morris, M. R., Engen, J. R., & Brown, J. M. (2011) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-011-0196-7 · Cited by 81 · see citing works

Identifying drug metallation sites on peptides using electron transfer dissociation (ETD), collision induced dissociation (CID) and ion mobility-mass spectrometry (IM-MS)

Williams, J. P., Brown, J. M., Campuzano, I. D. G., & Sadler, P. J. (2010) · Chemical Communications · doi:10.1039/c0cc00358a · Cited by 75 · see citing works

Effects of Cation Charge-Site Identity and Position on Electron-Transfer Dissociation of Polypeptide Cations

Xia, Y., Gunawardena, H. P., Erickson, D. E., & McLuckey, S. A. (2007) · Journal of the American Chemical Society · doi:10.1021/ja0736764 · Cited by 75 · see citing works

Formation and Characterization of Protein−Protein Complexes in Vacuo

Wells, J. M., Chrisman, P. A., & McLuckey, S. A. (2003) · Journal of the American Chemical Society · doi:10.1021/ja035051l · Cited by 72 · see citing works

Gas-phase solvated negative ions

Takashima, K., & Riveros, J. M. (1998) · Mass Spectrometry Reviews · doi:10.1002/(sici)1098-2787(1998)17:6 · Cited by 72 · see citing works

Extensive Charge Reduction and Dissociation of Intact Protein Complexes Following Electron Transfer on a Quadrupole-Ion Mobility-Time-of-Flight MS

Lermyte, F., Williams, J. P., Brown, J. M., Martin, E. M., & Sobott, F. (2015) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-015-1124-z · Cited by 71 · see citing works

Gas-Phase Ion/Ion Reactions Involving Tris-Phenanthroline Alkaline Earth Metal Complexes as Charge Inversion Reagents for the Identification of Fatty Acids

Randolph, C. E., Foreman, D. J., Betancourt, S. K., Blanksby, S. J., & McLuckey, S. A. (2018) · Analytical Chemistry · doi:10.1021/acs.analchem.8b03441 · Cited by 71 · see citing works

Evidence of charge inversion in the reaction of singly charged anions with multiply charged macroions

Loo, R. R. O., Udseth, H. R., & Smith, R. (1991) · The Journal of Physical Chemistry · doi:10.1021/j100170a006 · Cited by 70 · see citing works

Charge state dependent collision‐induced dissociation of native and reduced porcine elastase

Hogan, J. M., & McLuckey, S. A. (2003) · Journal of Mass Spectrometry · doi:10.1002/jms.458 · Cited by 70 · see citing works

Product Ion Charge State Determination via Ion/Ion Proton Transfer Reactions

Herron, W. J., Goeringer, D. E., & McLuckey, S. A. (1996) · Analytical Chemistry · doi:10.1021/ac950895b · Cited by 67 · see citing works

Front-End Electron Transfer Dissociation: A New Ionization Source

Earley, L., Anderson, L. C., Bai, D. L., Mullen, C., Syka, J. E. P., English, A. M., Dunyach, J., Stafford, G. C., Shabanowitz, J., Hunt, D. F., et al. (2013) · Analytical Chemistry · doi:10.1021/ac401783f · Cited by 67 · see citing works

Gaseous Protein Cations Are Amphoteric

Stephenson, J. L., & McLuckey, S. A. (1997) · Journal of the American Chemical Society · doi:10.1021/ja9632973 · Cited by 66 · see citing works

Electron‐based fragmentation methods in mass spectrometry: An overview

Qi, Y., & Volmer, D. A. (2015) · Mass Spectrometry Reviews · doi:10.1002/mas.21482 · Cited by 65 · see citing works

Electron transfer dissociation: Effects of cation charge state on product partitioning in ion/ion electron transfer to multiply protonated polypeptides

Liu, J., & McLuckey, S. A. (2012) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2012.07.013 · Cited by 64 · see citing works

Gas-phase ion/ion reactions of peptides and proteins: acid/base, redox, and covalent chemistries

Prentice, B. M., & McLuckey, S. A. (2012) · Chemical Communications · doi:10.1039/c2cc36577d · Cited by 64 · see citing works

Analyses of Histone Proteoforms Using Front-end Electron Transfer Dissociation-enabled Orbitrap Instruments

Anderson, L. C., Karch, K. R., Ugrin, S. A., Coradin, M., English, A. M., Sidoli, S., Shabanowitz, J., Garcia, B. A., & Hunt, D. F. (2016) · Molecular & Cellular Proteomics · doi:10.1074/mcp.o115.053843 · Cited by 60 · see citing works

Whole Protein Dissociation in a Quadrupole Ion Trap: Identification of an a Priori Unknown Modified Protein

Amunugama, R., Hogan, J. M., Newton, K. A., & McLuckey, S. A. (2004) · Analytical Chemistry · doi:10.1021/ac034900k · Cited by 57 · see citing works

Parallel Ion Parking of Protein Mixtures

Chrisman, P. A., Pitteri, S. J., & McLuckey, S. A. (2005) · Analytical Chemistry · doi:10.1021/ac0515778 · Cited by 56 · see citing works

Charge state dependent fragmentation of gaseous protein ions in a quadrupole ion trap: bovine ferri-, ferro-, and apo-cytochrome c

Engel, B. J., Pan, P., Reid, G. E., Wells, J. M., & McLuckey, S. A. (2002) · International Journal of Mass Spectrometry · doi:10.1016/s1387-3806(02)00562-6 · Cited by 56 · see citing works

The Histidine Effect. Electron Transfer and Capture Cause Different Dissociations and Rearrangements of Histidine Peptide Cation-Radicals

Tureček, F., Chung, T. W., Moss, C. L., Wyer, J. A., Ehlerding, A., Holm, A. I. S., Zettergren, H., Nielsen, S. B., Hvelplund, P., Chamot‐Rooke, J., et al. (2010) · Journal of the American Chemical Society · doi:10.1021/ja907808h · Cited by 56 · see citing works

Two Ion/Ion Charge Inversion Steps To Form a Doubly Protonated Peptide from a Singly Protonated Peptide in the Gas Phase

He, M., & McLuckey, S. A. (2003) · Journal of the American Chemical Society · doi:10.1021/ja0354521 · Cited by 54 · see citing works

Optimization of Electron Transfer Dissociation via Informed Selection of Reagents and Operating Parameters

Compton, P. D., Strukl, J. V., Bai, D. L., Shabanowitz, J., & Hunt, D. F. (2011) · Analytical Chemistry · doi:10.1021/ac202807h · Cited by 54 · see citing works

Triple-Stage Mass Spectrometry Unravels the Heterogeneity of an Endogenous Protein Complex

Ben-Nissan, G., Belov, M. E., Morgenstern, D., Levin, Y., Dym, O., Arkind, G., Lipson, C., Makarov, A. A., & Sharon, M. (2017) · Analytical Chemistry · doi:10.1021/acs.analchem.7b00518 · Cited by 54 · see citing works

Gaseous apomyoglobin ion dissociation in a quadrupole ion trap: [M + 2H] 2+ -[M + 21H] 21+ 1 1Prepared for submission to the International Journal of Mass Spectrometry in honor of Prof. R. Graham Cooks on the occasion of his 60th birthday

Newton, K. A., Chrisman, P. A., Reid, G. E., Wells, J. M., & McLuckey, S. A. (2001) · International Journal of Mass Spectrometry · doi:10.1016/s1387-3806(01)00485-7 · Cited by 53 · see citing works

Selective Covalent Bond Formation in Polypeptide Ions via Gas-Phase Ion/Ion Reaction Chemistry

Han, H., & McLuckey, S. A. (2009) · Journal of the American Chemical Society · doi:10.1021/ja904812d · Cited by 53 · see citing works

Analysis of Native-Like Proteins and Protein Complexes Using Cation to Anion Proton Transfer Reactions (CAPTR)

Laszlo, K. J., & Bush, M. F. (2015) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-015-1245-4 · Cited by 51 · see citing works

Phosphopeptide Anion Characterization via Sequential Charge Inversion and Electron-Transfer Dissociation

Gunawardena, H. P., Emory, J. F., & McLuckey, S. A. (2006) · Analytical Chemistry · doi:10.1021/ac060164j · Cited by 51 · see citing works

Front-End Electron Transfer Dissociation Coupled to a 21 Tesla FT-ICR Mass Spectrometer for Intact Protein Sequence Analysis

Weisbrod, C. R., Kaiser, N. K., Syka, J. E. P., Early, L., Mullen, C., Dunyach, J., English, A. M., Anderson, L. C., Blakney, G. T., Shabanowitz, J., et al. (2017) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-017-1702-3 · Cited by 49 · see citing works

Charge Transfer Dissociation (CTD) Mass Spectrometry of Peptide Cations Using Kiloelectronvolt Helium Cations

Hoffmann, W. D., & Jackson, G. P. (2014) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-014-0989-6 · Cited by 49 · see citing works

Reagent Anions for Charge Inversion of Polypeptide/Protein Cations in the Gas Phase

He, M., Emory, J. F., & McLuckey, S. A. (2005) · Analytical Chemistry · doi:10.1021/ac0482312 · Cited by 46 · see citing works

Gas-Phase Peptide/Protein Cationizing Agent Switching via Ion/Ion Reactions

Newton, K. A., & McLuckey, S. A. (2003) · Journal of the American Chemical Society · doi:10.1021/ja036924e · Cited by 46 · see citing works

Generation and manipulation of sodium cationized peptides in the gas phase

Newton, K. A., & McLuckey, S. A. (2004) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2003.12.014 · Cited by 44 · see citing works

Evolution of instrumentation for the study of gas-phase ion/ion chemistry via mass spectrometry

Xia, Y., & McLuckey, S. A. (2007) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2007.10.018 · Cited by 44 · see citing works

Ion-Ion Proton Transfer and Parallel Ion Parking for the Analysis of Mixtures of Intact Proteins on a Modified Orbitrap Mass Analyzer

Ugrin, S. A., English, A. M., Syka, J. E. P., Bai, D. L., Anderson, L. C., Shabanowitz, J., & Hunt, D. F. (2019) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-019-02290-8 · Cited by 44 · see citing works

Parallel Ion Parking: Improving Conversion of Parents to First-Generation Products in Electron Transfer Dissociation

Chrisman, P. A., Pitteri, S. J., & McLuckey, S. A. (2005) · Analytical Chemistry · doi:10.1021/ac0503613 · Cited by 44 · see citing works

Integration of Ultraviolet Photodissociation with Proton Transfer Reactions and Ion Parking for Analysis of Intact Proteins

Holden, D. D., McGee, W. M., & Brodbelt, J. S. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b03911 · Cited by 43 · see citing works

Evaluation of Electrospray Ionization Mass Spectrometry as a Tool for Characterization of Small Soluble Protein Aggregates

Wang, G., Johnson, A. J., & Kaltashov, I. A. (2011) · Analytical Chemistry · doi:10.1021/ac203017x · Cited by 42 · see citing works

Analysis of Monoclonal Antibody Sequence and Post-translational Modifications by Time-controlled Proteolysis and Tandem Mass Spectrometry

Zhang, L., English, A. M., Bai, D. L., Ugrin, S. A., Shabanowitz, J., Ross, M. M., Hunt, D. F., & Wang, W. (2015) · Molecular & Cellular Proteomics · doi:10.1074/mcp.o115.056721 · Cited by 42 · see citing works

Multiple ion/ion reactions in the 3D ion trap: Selective reagent anion production for ETD and PTR from a single compound

Hartmer, R., Kaplan, D. A., Gebhardt, C. R., Ledertheil, T., & Brekenfeld, A. (2008) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2008.05.002 · Cited by 41 · see citing works

Generating Fatty Acid Profiles in the Gas Phase: Fatty Acid Identification and Relative Quantitation Using Ion/Ion Charge Inversion Chemistry

Randolph, C. E., Foreman, D. J., Blanksby, S. J., & McLuckey, S. A. (2019) · Analytical Chemistry · doi:10.1021/acs.analchem.9b01333 · Cited by 41 · see citing works

An ion trap-ion mobility-time of flight mass spectrometer with three ion sources for ion/ion reactions

Zhao, Q., Soyk, M. W., Schieffer, G. M., Führer, K., Gonin, M., Houk, R. S., & Badman, E. R. (2009) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2009.04.014 · Cited by 40 · see citing works

Increasing the Negative Charge of a Macroanion in the Gas Phase via Sequential Charge Inversion Reactions

He, M., & McLuckey, S. A. (2004) · Analytical Chemistry · doi:10.1021/ac0496087 · Cited by 39 · see citing works

Characterization of a PEGylated protein therapeutic by ion exchange chromatography with on-line detection by native ESI MS and MS/MS

Muneeruddin, K., Bobst, C. E., Frenkel, R., Houde, D., Turyan, I., Sosic, Z., & Kaltashov, I. A. (2017) · The Analyst · doi:10.1039/c6an02041k · Cited by 38 · see citing works

Gas-Phase Transformation of Phosphatidylcholine Cations to Structurally Informative Anions via Ion/Ion Chemistry

Stutzman, J. R., Blanksby, S. J., & McLuckey, S. A. (2013) · Analytical Chemistry · doi:10.1021/ac400190k · Cited by 37 · see citing works

Protein derivatization and sequential ion/ion reactions to enhance sequence coverage produced by electron transfer dissociation mass spectrometry

Anderson, L. C., English, A. M., Wang, W.-H., Bai, D. L., Shabanowitz, J., & Hunt, D. F. (2015) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2014.06.023 · Cited by 37 · see citing works

Site‐Specific Zwitterionic Polymer Conjugates of a Protein Have Long Plasma Circulation

Bhattacharjee, S., Liu, W., Wang, W., Weitzhandler, I., Li, X., Qi, Y., Liu, J., Pang, Y., Hunt, D. F., & Chilkoti, A. (2015) · ChemBioChem · doi:10.1002/cbic.201500439 · Cited by 36 · see citing works

Charge Transfer Dissociation of Complex Oligosaccharides: Comparison with Collision-Induced Dissociation and Extreme Ultraviolet Dissociative Photoionization

Ropartz, D., Li, P., Fanuel, M., Giuliani, A., Rogniaux, H., & Jackson, G. P. (2016) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-016-1453-6 · Cited by 35 · see citing works

Top-Down Analysis of Proteins in Low Charge States

Bashyal, A., Sanders, J. D., Holden, D. D., & Brodbelt, J. S. (2019) · Journal of the American Society for Mass Spectrometry · doi:10.1007/s13361-019-02146-1 · Cited by 35 · see citing works

Dissociation of disulfide‐intact somatostatin ions: the roles of ion type and dissociation method

Mentinova, M., Han, H., & McLuckey, S. A. (2009) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.4172 · Cited by 34 · see citing works

Gas-Phase Chemical Separation of Phosphatidylcholine and Phosphatidylethanolamine Cations via Charge Inversion Ion/Ion Chemistry

Rojas-Betancourt, S., Stutzman, J. R., Londry, F. A., Blanksby, S. J., & McLuckey, S. A. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b02243 · Cited by 33 · see citing works

Gas-Phase Ion/Ion Reactions of Multiply Protonated Polypeptides with Metal Containing Anions

Newton, K. A., Amunugama, R., & McLuckey, S. A. (2005) · The Journal of Physical Chemistry A · doi:10.1021/jp044106i · Cited by 32 · see citing works

Dissociation reactions of gaseous ferro-, ferri-, and apo-cytochrome c ions

Wells, J. M., Reid, G. E., Engel, B. J., Pan, P., & McLuckey, S. A. (2001) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(01)00275-6 · Cited by 31 · see citing works

Electron transfer with no dissociation ion mobility–mass spectrometry (ETnoD IM-MS). The effect of charge reduction on protein conformation

Jhingree, J. R., Beveridge, R., Dickinson, E. R., Williams, J. P., Brown, J. M., Bellina, B., & Barran, P. E. (2016) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2016.08.006 · Cited by 31 · see citing works

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Efficient and directed peptide bond formation in the gas phase via ion/ion reactions

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Selective Gas-Phase Ion/Ion Reactions: Enabling Disulfide Mapping via Oxidation and Cleavage of Disulfide Bonds in Intermolecularly-Linked Polypeptide Ions

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Structures of Fluoranthene Reagent Anions Used in Electron Transfer Dissociation and Proton Transfer Reaction Tandem Mass Spectrometry

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Chemical Noise Reduction via Mass Spectrometry and Ion/Ion Charge Inversion: Amino Acids

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Understanding reaction pathways in top-down ETD by dissecting isotope distributions: A mammoth task

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Enhanced Reactivity in Nucleophilic Acyl Substitution Ion/Ion Reactions Using Triazole-Ester Reagents

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Preparation of Labile Ni+(cyclam) Cations in the Gas Phase Using Electron-Transfer Reduction through Ion–Ion Recombination in an Ion Trap and Structural Characterization with Vibrational Spectroscopy

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Ultraviolet Photodissociation of Native Proteins Following Proton Transfer Reactions in the Gas Phase

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Ion/Ion Reactions with “Onium” Reagents: An Approach for the Gas-phase Transfer of Organic Cations to Multiply-Charged Anions

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Effects of Solution Structure on the Folding of Lysozyme Ions in the Gas Phase

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Gas Phase Reactivity of Carboxylates with N -Hydroxysuccinimide Esters

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Investigating reduced metal species via sequential ion/ion and ion/molecule reactions: The reactions of transition metal phenanthrolines with allyl iodide

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Trimethylation Enhancement Using 13C-Diazomethane: Gas-Phase Charge Inversion of Modified Phospholipid Cations for Enhanced Structural Characterization

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Maximizing Selective Cleavages at Aspartic Acid and Proline Residues for the Identification of Intact Proteins

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Design of a TW-SLIM Module for Dual Polarity Confinement, Transport, and Reactions

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Reagent Cluster Anions for Multiple Gas-Phase Covalent Modifications of Peptide and Protein Cations

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Transformation of [M+2H]2+ Peptide Cations to [M – H]+, [M+H+O]+, and M+• Cations via Ion/Ion Reactions: Reagent Anions Derived from Persulfate

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Increasing the Upper Mass/Charge Limit of a Quadrupole Ion Trap for Ion/Ion Reaction Product Analysis via Waveform Switching

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C-terminal peptide extension via gas-phase ion/ion reactions

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Proton hydrates as soft ion/ion proton transfer reagents for multiply deprotonated biomolecules

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Mass Spectrometry Reveals a Multifaceted Role of Glycosaminoglycan Chains in Factor Xa Inactivation by Antithrombin

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Gas-Phase Ion/Ion Chemistry as a Probe for the Presence of Carboxylate Groups in Polypeptide Cations

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Gas phase click chemistry via ion/ion reactions

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Modulation of Phosphopeptide Fragmentation via Dual Spray Ion/Ion Reactions Using a Sulfonate-Incorporating Reagent

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The Generation of Dehydroalanine Residues in Protonated Polypeptides: Ion/Ion Reactions for Introducing Selective Cleavages

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Selective Gas-Phase Oxidation and Localization of Alkylated Cysteine Residues in Polypeptide Ions via Ion/Ion Chemistry

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Microdroplet Fusion Chemistry for Charge State Reduction of Synthetic Polymers via Bipolar Dual Spray with Anionic Reagents

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Gas-Phase Oxidation of Neutral Basic Residues in Polypeptide Cations by Periodate

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Characterization of a DAPI-RIT-DAPI System for Gas-Phase Ion/Molecule and Ion/Ion Reactions

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Stability of Metal Oxide Semiconductor Gas Sensors: A Review

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High-confidence structural identification of metabolites relying on tandem mass spectrometry through isomeric identification: A tutorial

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Vibrational Spectra of the Ruthenium–Tris-Bipyridine Dication and Its Reduced Form in Vacuo

Munshi, M. U., Martens, J. K., Berden, G., & Oomens, J. (2020) · The Journal of Physical Chemistry A · doi:10.1021/acs.jpca.0c00888 · Cited by 32 · see citing works

Anion–Anion Chemistry with Mass‐Selected Molecular Fragments on Surfaces

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Relative Quantification of Lipid Isomers in Imaging Mass Spectrometry Using Gas-Phase Charge Inversion Ion/Ion Reactions and Infrared Multiphoton Dissociation

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Recent technological developments for native mass spectrometry

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Separation of Isobaric Lipids in Imaging Mass Spectrometry Using Gas-Phase Charge Inversion Ion/Ion Reactions

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An Ion Mobility and Gas-Phase Covalent Labeling Study of the Structure and Reactivity of Gaseous Ubiquitin Ions Electrosprayed from Aqueous and Denaturing Solutions

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Surface Activity of Amines Provides Evidence for the Combined ESI Mechanism of Charge Reduction for Protein Complexes

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Enhanced Characterization of Histones Using 193 nm Ultraviolet Photodissociation and Proton Transfer Charge Reduction

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Charge Manipulation Using Solution and Gas-Phase Chemistry to Facilitate Analysis of Highly Heterogeneous Protein Complexes in Native Mass Spectrometry

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Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs

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Gas-phase ion/ion chemistry for structurally sensitive probes of gaseous protein ion structure: Electrostatic and electrostatic to covalent cross-linking

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Experimental Determination of Activation Energies for Covalent Bond Formation via Ion/Ion Reactions and Competing Processes

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TEMPO-Assisted Free-Radical-Initiated Peptide Sequencing Mass Spectrometry for Ubiquitin Ions: An Insight on the Gas-Phase Conformations

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Top-Down Analysis of Supercharged Proteins Using Collision-, Electron-, and Photon-Based Activation Methods

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Pulsed laser deposition of Pd/WO3 nanoparticles on Si nanostructure for highly sensitive room-temperature gas sensors

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Simultaneous Evaluation of a Vaccine Component Microheterogeneity and Conformational Integrity Using Native Mass Spectrometry and Limited Charge Reduction

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An analytical evaluation of tools for lipid isomer differentiation in imaging mass spectrometry

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Ion-pairs as a gateway to transmetalation: aryl transfer from boron to nickel and magnesium

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Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation

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Extending the capabilities of intact-mass analyses to monoclonal immunoglobulins of the E-isotype (IgE)

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Characterization of Homopolymer Distributions via Direct Infusion ESI-MS/MS using Wide Mass-to-Charge Windows and Gas-Phase Ion/Ion Reactions

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Analytical methodologies for oxidized organic compounds in the atmosphere

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Charge Inversion Ion/Ion Reactions Coupled to Ion Mobility/Mass Spectrometry: Oligosaccharides

Gurav, A. B., & Webb, I. (2023) · Journal of the American Society for Mass Spectrometry · doi:10.1021/jasms.3c00093 · Cited by 5 · see citing works

Evaluation of Hydrogen–Deuterium Exchange during Transient Vapor Binding of MeOD with Model Peptide Systems Angiotensin II and Bradykinin

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Ion parking in native mass spectrometry

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Generation of Multiply Charged Protein Anions from Multiply Charged Protein Cations via Gas-Phase Ion/Ion Reactions

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Top-Down Characterization of Yeast tRNA by Gas-Phase Fractionation and Collisionally Activated Dissociation Informed by Electron Photodetachment Charge Reduction Mass Spectrometry

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Gas-Phase Covalent Bond Formation via Nucleophilic Substitution: A Dissociation Kinetics Study of Leaving Groups, Isomeric R Groups, and Nucleophilic Sites

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Ion-atom reactions in bioanalytical mass spectrometry

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Molecular architecture and platelet-activating properties of small immune complexes assembled on heparin and platelet factor 4

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Evidence of H/D Exchange within Metal-Adducted Carbohydrates after Ion/Ion-Dissociation Reactions

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Sequencing of Phosphopeptides Using a Sequential Charge Inversion Ion/Ion Reaction and Electron Capture Dissociation Workflow

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Gas-Phase Ion–Ion Reactions for Lipid Identification in Biological Tissue Sections

Prentice, B. M. (2021) · Methods in molecular biology · doi:10.1007/978-1-0716-2030-4_1 · Cited by 3 · see citing works

Catalytic Activity of Electrosprayed Enzyme Ions in the Gas Phase

Ng, Y. K., Currie, S., Aliyari, E., Cui, C., Vahidi, S., & Konermann, L. (2026) · Journal of the American Chemical Society · doi:10.1021/jacs.6c00627 · Cited by 2 · see citing works

Competition between transmetalation and electron transfer in the gas-phase reactions of ytterbium complex trications and the tetraphenylborate anion

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Top-Down Characterization of a Yeast tRNA Extract by Gas-Phase Fractionation Electron Photodetachment Charge Reduction Mass SpectrometryPreprint

Lanzillotti, M. B., & Brodbelt, J. S. (2024) · ChemRxiv · doi:10.26434/chemrxiv-2024-s77rv · Cited by 2 · see citing works

A Novel Bisquaternary Ammonium Compound as an Anion Sensor—ESI-MS and Fluorescence Study

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Altering Lipid A Precursor Ion Types in the Gas Phase for In-Depth Structural Elucidation via Tandem Mass Spectrometry

Chao, H., & McLuckey, S. A. (2025) · Analytical Chemistry · doi:10.1021/acs.analchem.4c05910 · Cited by 1 · see citing works

Characterizing the Energy Surfaces of Competing Pathways in Gas-Phase Charge Inversion Ion/Ion Reactions Involving Cationized Lipids and Anionic Diacids

Guo, Y., Specker, J. T., Gaikwad, P. B., Miranda‐Quintana, R. A., & Prentice, B. M. (2025) · Journal of the American Society for Mass Spectrometry · doi:10.1021/jasms.5c00123 · Cited by 1 · see citing works

Digital Revitalization of a Legacy Linear Ion Trap System

Huntley, A. P., Reilly, P. T. A., Anderson, G., Anderson, C. G., & Clowers, B. H. (2026) · Analytical Chemistry · doi:10.1021/acs.analchem.6c01829 · Cited by 1 · see citing works

Evidence of Gas Phase Glucosyl Transfer and Glycation in the CID/HCD-Spectra of S-Glucosylated Peptides

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Molecular architecture and platelet-activating properties of small immune complexes assembled on intact heparin and their possible involvement in heparin-induced thrombocytopeniaPreprint

Yang, Y., Du, Y., Ivanov, D. G., Niu, C., Clare, R., Smith, J. W., Nazy, I., & Kaltashov, I. A. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.02.11.528150 · Cited by 1 · see citing works

Anionen‐Anionen‐Chemie mit massenselektierten Fragmentionen auf Oberflächen

Yang, F., Behrend, K.-A., Knorke, H., Rohdenburg, M., Charvát, A., Jenne, C., Abel, B., & Warneke, J. (2021) · Angewandte Chemie · doi:10.1002/ange.202109249

Ionic Charge Manipulation Using Solution and Gas-Phase Chemistry to Facilitate Analysis of Highly Heterogeneous Protein Complexes in Native Mass SpectrometryPreprint

Yang, Y., Niu, C., Bobst, C. E., & Kaltashov, I. A. (2020) · ChemRxiv · doi:10.26434/chemrxiv.13379975

Determination of product ions emerged from dications by varying retarding electric field in reflectron time-of-flight mass spectrometer supported by ion trajectory simulations

Kitagawa, K., Hirayama, K., Fujihara, A., & Yatsuhashi, T. (2024) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2024.117314

Analytical applications of gas-phase ion chemistry enabled by mass spectrometry

Kang, W.-Y., & Prentice, B. M. (2026) · Analytical Methods · doi:10.1039/d5ay00535c

Catalysis of Acetone Enolization by Nitrogen-Containing Ligands: An Infrared Spectroscopic Study of (CH 3 COCH 3 –X) + Complexes (X = CH 3 CN, CH 2 CHCN, NH 3 )

Xu, S., Gao, J., Li, Y., Wei, M., Wu, X., Xie, M., & Hu, Y. (2026) · The Journal of Physical Chemistry A · doi:10.1021/acs.jpca.5c08021

Proton transfer reagent cations for ion–ion charge state manipulation of high mass negatively-charged analytes in an electrodynamic ion trap

Ellin, N. R., Faye, B., Horn, S. A., Koers, A. M., & McLuckey, S. A. (2026) · The Analyst · doi:10.1039/d5an01354b

Improved Protein Identification in Native Ambient Mass Spectrometry by the Integration of Proton Transfer Charge Reduction and Higher-Energy Collision Dissociation (PTCR-HCD MS3)

Edwards, R., Hale, O. J., Vickers, S., & Cooper, H. J. (2026) · Journal of the American Society for Mass Spectrometry · doi:10.1021/jasms.6c00165

Gas phase charge reduction for improved protein characterization by mass spectrometry

Tennakoon, S. C., Amunugama, L., & Shaw, J. (2026) · Analytica Chimica Acta · doi:10.1016/j.aca.2026.346036

Miniature Mass Spectrometry for On-Site Analysis Using Self-Suction Sampling and α-Particle Ionization

Xing, R., Li, W., Zhang, J., Tan, J., & Hu, B. (2026) · Analytical Chemistry · doi:10.1021/acs.analchem.6c04777

Ion/Ion Reactions: New Chemistry for Analytical MS

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Theoretical Studies of Gas Phase Ion Reactions in Mass Spectrometry

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Fundamental Study of Gas Phase Ion/Ion Reactions and Mass Spectrometry Instrumentation

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Evolution of instrumentation for the study of gas-phase ion/ion chemistry via mass spectrometry

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