ApoE is Secreted as a Lipid Nanoparticle by Mammalian Cells: Implications for Alzheimer’s Disease Pathogenesis
Open accessAbstract
The brain is the most cholesterol-rich organ in the body, and ApoE is the main lipid carrier protein in the brain. Although very little, if any, ApoE exists in its apoprotein form in physiological fluids, recombinant ApoE is typically prepared in a lipid-free state to study its physiological functions. We describe a lipid nanoparticle (LNP) form of ApoE as a primary extracellular product of the eukaryotic protein export system. Whereas the apoprotein is the dominant secreted product when the APOE gene is overexpressed in mammalian cells, an LNP form of ApoE is also observed. The LNP form is, however, the major secreted product from unmodified CCF-STTG1 astrocytoma cells. The C-terminal domain of ApoE plays a key role in LNP biosynthesis as the ApoE3 W210* truncation mutant is secreted without lipidation. Secreted ApoE LNPs are markedly better substrates than the apoprotein itself for further growth via the action of ATP-dependent lipid pumps. Compared to ApoE3 or the Alzheimer’s disease-protective ApoE2 variant, the recovered yield of the LNP form of the disease-predisposing ApoE4 variant is higher. Intriguingly, the LNP yield of the rare disease-protective R251G variant of ApoE4 is comparable to that of ApoE3 and ApoE2. Analogous to the well-documented intracellular biosynthesis of ApoB-containing LNPs, the biogenesis and pathophysiological relevance of the LNP form of ApoE warrant further investigation.
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Written from the paper’s full text.
TL;DR
ApoE is secreted by mammalian cells not only as apoprotein but also as a lipid nanoparticle (LNP), and this LNP form is the major secreted product from unmodified CCF-STTG1 astrocytoma cells. The C-terminal domain is required for lipidation, and ApoE4 LNP yield is higher than ApoE3/ApoE2, while the protective R251G variant yields levels comparable to ApoE3/ApoE2.
Key findings
- Recombinant ApoE3 from Expi293F cells resolved into two SEC peaks: a high-molecular-weight LNP form (“Peak 1”) and a ~158 kDa tetrameric apoprotein form (“Peak 2”). On average (N=3), 67 ± 10 μg purified ApoE3 was obtained per mL culture, with 12 ± 1 μg in Peak 1 and 56 ± 10 μg in Peak 2.
- Peak 1 ApoE3 LNPs were ~15–20 nm by NSEM, contained cholesterol (cholesterol:ApoE molar ratio 15.9 ± 9.8 after correction), and were enriched in phospholipids, sphingomyelins, and ceramides by LC/MS targeted lipidomics (762 lipid species, 44 lipid classes).
- The ApoE3 W210* truncation mutant was secreted without lipidation, and its Peak 1 fraction showed no cholesterol enrichment, supporting a key role for the C-terminal domain in LNP biosynthesis.
- ApoE4 gave the highest Peak 1 protein yield among isoforms tested; total yields (N=3) were ApoE2 42 ± 14 μg/mL (Peak 1 9.0 ± 3.1), ApoE4 30 ± 8 μg/mL (Peak 1 9.6 ± 2.4), and ApoE4 R251G 52 ± 13 μg/mL (Peak 1 7.9 ± 1.2). Peak 1 ApoE3 promoted BODIPY-cholesterol efflux and SH-SY5Y endocytosis better than Peak 2 apoprotein.
Methods
- ApoE variants were expressed in Expi293F, HepG2, and CCF-STTG1 cells; secreted protein was purified by heparin affinity chromatography followed by size-exclusion chromatography, with Peaks 1 and 2 collected.
- Characterization used Western blotting, negative-stain EM/cryo-TEM, mass-spectrometric proteomics, sialidase deglycosylation, cholesterol assays, and LC/MS targeted lipidomics.
- Functional assays measured BODIPY-cholesterol efflux from CCF-STTG1 cells and ApoE uptake by SH-SY5Y cells; isoform yields and lipid ratios were compared across ApoE2, ApoE3, ApoE4, and ApoE4 R251G.
Limitations
- The paper does not state a formal limitations section. It notes that the implications for AD pathogenesis “remain to be explored,” that the extent to which ABCA1 acts on ApoE3 Peak 1 needs further exploration, and that mechanisms of LNP biosynthesis in the ER and Golgi warrant further research.
- Evident from the text: most experiments use recombinant overexpression in cell lines, and the authors state that LNP biosynthesis is a readily saturable process that can be overwhelmed by overexpression conditions, making apoprotein secretion potentially an artifact of overexpression.
- Evident from the text: the work is in vitro/cell-line based and does not establish in vivo brain or CSF relevance; the molecular details of the ABCA1–ApoE interface remain unknown.
Model-written summary. Check it against the paper before relying on it.
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Cites
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Claims the paper makes
44 of 78 cited sources checked · 15 supported · 1 flagged · accuracy not yet measured
- Premisecitation
Proteinaceous lipid nanoparticles (LNPs) are the main vehicles for lipid transport between cells in mammals.
“Proteinaceous lipid nanoparticles (LNPs) are the main vehicles for lipid transport between cells in mammals.1–4”
Quote in the paperSubstantial claim3 of 4 sources checked- cites [1] source
The “CNS APOE protein structure” and “APOE CNS lipoproteins” sections describe lipid-associated lipoprotein particles and their role in lipid transport. They do not establish that these particles are the main vehicles for lipid transport between cells throughout mammals; that broader, comparative claim is unsupported by this source. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [2] source
The Introduction (page unavailable) says APOE circulates as part of a lipoprotein and plays an essential role in cholesterol and lipid metabolism. The section on APOE and mitochondrial function calls APOE a major modulator of cellular lipoprotein and cholesterol transport. Neither passage establishes that proteinaceous lipid nanoparticles are the main vehicles for lipid transport between cells throughout mammals. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [3] source
- cites [4] source
- Premisecitation
ApoE is associated with virtually all plasma LNPs, albeit in varying amounts.
“ApoE is associated with virtually all plasma LNPs, albeit in varying amounts.5”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [5] source
The Discussion (page unavailable) reports APOE across multiple cerebrospinal-fluid lipoprotein populations of various sizes. That supports a broad association in CSF, but not the claim that APOE is associated with virtually all plasma lipoprotein particles in varying amounts. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
APOE4 lowers the age of onset of Alzheimer's Disease in a dose-dependent fashion.
“APOE4 is the strongest genetic risk factor for AD not only increasing the odds ratio of developing the disease but also lowering the age of onset in a dose-dependent fashion.17, 18”
Quote in the paperNot a substantial claim1 of 2 sources checked - Premisecitation
Mammalian expression systems retain physiologically relevant secretory, folding and post-translational modification mechanisms.
“Mammalian expression systems retain physiologically relevant secretory, folding and post-translational modification mechanisms, but column-purified recombinant ApoE is invariably prepared as apoprotein.22–25”
Quote in the paperSubstantial claim3 of 4 sources checked- cites [22] source
- cites [23] source
The Results section on apoE3-Jac self-association reports using apoE produced in HEK293 cells, but does not discuss whether mammalian expression preserves physiologically relevant secretion, folding, or post-translational modification mechanisms. Searches for those mechanisms found no passage addressing the claim; page numbers were not available in our copy. (LLM, conf=0.72)
Experimental — accuracy not yet measured - cites [24] source
The Methods (Cell Culture; page unavailable) report that HEK293T cells expressed ApoE and that ApoE was detected in their conditioned medium, supporting secretion from a mammalian expression system. The paper does not establish that such systems retain physiologically relevant folding or post-translational modification mechanisms. (LLM, conf=0.78)
Experimental — accuracy not yet measured - cites [25] source
In “Physiologically produced lipidated ApoE reproducibly activates MAP-kinase signaling in human neurons” (page unavailable), the paper reports that HEK293-produced ApoE is secreted and has a glycosylation state, supporting the secretory and post-translational-modification parts of the claim. It also finds that HEK293-produced ApoE has signaling properties similar to physiologically produced ApoE. The copy does not establish that mammalian expression systems retain physiologically relevant folding mechanisms, or make that general claim about expression systems. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
The resulting nanoparticles typically lack the characteristic lipid complexity of their plasma- or CSF-derived counterparts.
“the resulting nanoparticles typically lack the characteristic lipid complexity of their plasma- or CSF-derived counterparts.12, 26”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [12] source
In “Lipidated, recombinant ApoE lipoproteins resemble astrocyte-secreted ApoE lipoproteins” (page not available), the paper describes nanoparticles assembled from recombinant ApoE and a selected artificial lipid, supporting the claim that these particles have a limited lipid composition. It does not compare their lipid complexity with plasma- or CSF-derived particles or establish that this is typical of resulting nanoparticles generally. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [26] source
- Premisecitation
Column-purified recombinant ApoE is invariably prepared as apoprotein.
“Mammalian expression systems retain physiologically relevant secretory, folding and post-translational modification mechanisms, but column-purified recombinant ApoE is invariably prepared as apoprotein.22–25”
Quote in the paperSubstantial claim3 of 4 sources checked- cites [22] source
- cites [23] source
The Materials and Methods (Cholesterol Efflux Assay; page unavailable) mentions purified human apoE, and the Results (APOE3-Jac variant reduces self-association and increases lipidation; page unavailable) discusses lipid-free apoE. Neither passage says that column purification invariably yields apoprotein; searches for purification and lipid-free recombinant apoE did not establish that point. (LLM, conf=0.72)
Experimental — accuracy not yet measured - cites [24] source
The Methods (Cell Culture) and Results describe ApoE expressed in HEK293T cells and used in conditioned medium, not column-purified ApoE. The Methods (Protein Purification and Labeling) describe column purification of other proteins but do not say whether column-purified recombinant ApoE is invariably an apoprotein. Searches for ApoE apoprotein, lipidation, and column purification found no passage addressing that claim. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [25] source
The 'Production of recombinant proteins' methods describe HEK293- and bacteria-produced ApoE but do not state that column-purified recombinant ApoE is an apoprotein. The 'Lipidated ApoE' methods describe purification of glial lipoproteins, a different preparation. Searches for apoprotein, lipid-free recombinant ApoE, and column purification found no passage establishing the claim. (LLM, conf=0.72)
Experimental — accuracy not yet measured
- Premisecitation
APOE4 increases the odds ratio of developing Alzheimer's Disease.
“APOE4 is the strongest genetic risk factor for AD not only increasing the odds ratio of developing the disease but also lowering the age of onset in a dose-dependent fashion.17, 18”
Quote in the paperNot a substantial claim1 of 2 sources checked - Findingcitation
The apoprotein form of ApoE3 W210* eluted later than Peak 2 of full-length ApoE3 on a preparative SEC column.
“Consistent with earlier reports associating ApoE oligomerization to its C-terminal end domain,43 the apoprotein form of ApoE3 W210* eluted later than Peak 2 of full-length ApoE3 on a preparative SEC column (Figure 6A).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [43] source
- Interpretationown data
The intracellular lipidation mechanism of ApoE is distinct from the mechanism involved in the biosynthesis of ApoB-containing LDL particles.
“indicating that the intracellular lipidation mechanism of ApoE is distinct from its more well-studied counterpart that is involved in the biosynthesis of ApoB-containing LDL particles.41”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [41] source
The section ‘Importance of apoB-MTP binding in lipoprotein assembly’ (page unavailable) describes MTP-assisted lipidation of nascent apoB. The paper does not establish how ApoE is lipidated or compare its mechanism with apoB’s, so the claimed distinction is unsupported. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Rests on an assumption: Lomitapide is an FDA-approved drug used to treat hypercholesterolemia based on its ability to inhibit MTTP.
- Findingown data
No major isoform differences could be observed in promoting efflux for BODIPY-cholesterol loaded CCF-STTG1.
“Under these conditions, no major isoform differences could be observed (Figure 8D), in agreement with previously reported data.49”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [49] source
- Premisecitation
ApoE is not detected in appreciable quantities in its apo form in physiological fluids.
“Although ApoE is not detected in appreciable quantities in its apo form in physiological fluids, to date all reports describing the biochemical properties of this recombinant protein have deployed lipid-free biosynthetic materials.21–25”
Quote in the paperSubstantial claim3 of 5 sources checked- cites [21] source
- cites [22] source
- cites [23] source
The Results section reports cholesterol associated with apoE in human brains, and the Discussion describes lipid transport by apoE-containing particles. Neither passage addresses whether appreciable quantities of lipid-free apoE are detectable in physiological fluids. Searches for lipid-free apoE in plasma or cerebrospinal fluid found no passage establishing that claim; page numbers were unavailable in our copy. (LLM, conf=0.69)
Experimental — accuracy not yet measured - cites [24] source
The Results and Cell Culture Methods describe ApoE in conditioned medium and its effect on tau uptake, but do not address whether appreciable quantities of lipid-free ApoE occur in physiological fluids. Searches for ApoE’s apo form, lipidation, and physiological fluids found no passage supporting that claim. The copy also does not assess whether prior biochemical reports used lipid-free recombinant ApoE. (LLM, conf=0.74)
Experimental — accuracy not yet measured - cites [25] source
The Introduction describes ApoE as a major component of circulating lipoproteins, and the section on physiologically produced lipidated ApoE finds it in human-plasma LDL (page numbers unavailable). Neither passage establishes that appreciable quantities of lipid-free ApoE are absent from physiological fluids. Searches for apo-form and lipid-free ApoE did not find that claim in our copy. (LLM, conf=0.72)
Experimental — accuracy not yet measured
- Premisecitation
To date all reports describing the biochemical properties of this recombinant protein have deployed lipid-free biosynthetic materials.
“Although ApoE is not detected in appreciable quantities in its apo form in physiological fluids, to date all reports describing the biochemical properties of this recombinant protein have deployed lipid-free biosynthetic materials.21–25”
Quote in the paperSubstantial claim3 of 5 sources checked- cites [21] source
- cites [22] source
- cites [23] source
The Results section (page unavailable) describes biochemical tests of apoE produced in HEK293 cells and bacterially expressed apoE, and discusses self-aggregation of lipid-free apoE. It does not establish that these preparations were all lipid-free or that all reports to date used lipid-free recombinant material. (LLM, conf=0.82)
Experimental — accuracy not yet measured - cites [24] source
The Methods (Cell Culture) describe producing ApoE in HEK293T cells and collecting conditioned medium, while the Results examine its effect on tau uptake. Neither section addresses whether the ApoE was lipid-free or whether all prior biochemical reports used lipid-free recombinant material (searched: lipid-free ApoE, lipidated ApoE). (LLM, conf=0.74)
Experimental — accuracy not yet measured - cites [25] source
The Methods section (page unavailable) confirms that the paper used recombinant ApoE produced in HEK293 cells and bacteria, but it does not establish that those preparations were lipid-free. The section on physiologically produced lipidated ApoE (page unavailable) also reports testing ApoE-containing glial lipoproteins and LDL. This paper therefore does not support the claim that all such reports used lipid-free materials. (LLM, conf=0.83)
Experimental — accuracy not yet measured
- Premisecitation
Several genetic loci with relevance to AD pathogenesis (e.g., PICALM, SORL1, BIN1) encode proteins found in the ER and/or Golgi compartments of cells.
“Second, several genetic loci with relevance to AD pathogenesis (e.g., PICALM, SORL1, BIN1) encode proteins found in the ER and/or Golgi compartments of cells.52, 53”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [52] source
The paper reports an association between PICALM and Alzheimer’s disease and identifies BIN1 as another locus of interest (Abstract and Table 2; page unavailable). It discusses their roles in endocytosis, but the passages do not establish that their proteins are found in the ER or Golgi, and they do not address SORL1. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [53] source
- Interpretationcitation
The discovery of disease-relevant alleles that map to two well-studied ATP-dependent lipid pumps, ABCA1 and ABCA7, highlights a potential role for extracellular LNP modification.
“The discovery of disease-relevant alleles that map to two well-studied ATP-dependent lipid pumps, ABCA1 and ABCA7,55, 56 highlights a potential role for extracellular LNP modification.”
Quote in the paperNot a substantial claim2 of 2 sources checked - Findingnone given
Compared to ApoE3 or the Alzheimer's Disease-protective ApoE2 variant, the recovered yield of the LNP form of the disease-predisposing ApoE4 variant is higher.
“Compared to ApoE3 or the Alzheimer’s Disease-protective ApoE2 variant, the recovered yield of the LNP form of the disease-predisposing ApoE4 variant is higher.”
Quote in the paperSubstantial claim - Findingreasoning
The ApoE3 W210* truncation mutant is secreted without lipidation.
“as the ApoE3 W210* truncation mutant is secreted without lipidation”
Quote in the paperSubstantial claim - Findingnone given
Secreted ApoE LNPs are markedly better substrates than the apoprotein itself for further growth via the action of ATP-dependent lipid pumps.
“Secreted ApoE LNPs are markedly better substrates than the apoprotein itself for further growth via the action of ATP-dependent lipid pumps.”
Quote in the paperSubstantial claim - Findingown data
The LNP form is the major secreted product from unmodified CCF-STTG1 astrocytoma cells.
“The LNP form is, however, the major secreted product from unmodified CCF-STTG1 astrocytoma cells.”
Quote in the paperSubstantial claim - Findingnone given
The LNP yield of the rare disease-protective R251G variant of ApoE4 is comparable to ApoE3 and ApoE2.
“Intriguingly, the LNP yield of the rare disease-protective R251G variant of ApoE4 is comparable to ApoE3 and ApoE2.”
Quote in the paperNot a substantial claim - Findingown data
None of the other proteins that co-eluted in Peak 1 were readily identifiable as known constituents of biogenic LNPs.
“None of the other proteins that co-eluted in Peak 1 were readily identifiable as known constituents of biogenic LNPs.”
Quote in the paperNot a substantial claim - Findingown data
NSEM allowed direct visualization of stand-alone and antibody-bound LNPs.
“subsequent NSEM allowed direct visualization of stand-alone and antibody-bound LNPs (Figure 1C (right); Supplementary Figure 6).”
Quote in the paperSubstantial claim - Findingown data
ApoE3 was the dominant apolipoprotein in LNPs generated from a recombinant source of this material.
“ApoE3 was in fact the dominant apolipoprotein in LNPs generated from a recombinant source of this material.”
Quote in the paperSubstantial claim - Findingown data
Western blot analysis confirmed the presence of ApoE in concentrated fractions corresponding to both Peaks 1 and 2.
“Western blot analysis confirmed the presence of ApoE in concentrated fractions corresponding to both Peaks 1 and 2”
Quote in the paperSubstantial claim - Findingown data
HepG2 and CCF-STTG1 cells transfected with APOE3 secrete ApoE in both Peak 1 and Peak 2 forms via small-scale SEC.
“When transfected with the APOE3, the supernatants of both cell cultures yielded Peaks 1 and 2 via small-scale SEC (Figure 2).”
Quote in the paperSubstantial claim - Findingown data
The purified SEC fractions of Peaks 1 and 2 are quantitatively stable over the course of the experiment.
“these purified SEC fractions were reinjected onto a SEC column and shown to be quantitatively stable over the course of the experiment (Supplementary Figure 4B).”
Quote in the paperSubstantial claim - Findingown data
ApoE in Peaks 1 and 2 are not interchanging conformers.
“To rule out the possibility that ApoE in Peaks 1 and 2 are interchanging conformers, these purified SEC fractions were reinjected onto a SEC column and shown to be quantitatively stable over the course of the experiment (Supplementary Figure 4B).”
Quote in the paperSubstantial claim - Findingown data
We observed the biogenesis of a well-defined high-molecular weight form of ApoE on size exclusion chromatography in transfected Expi293F cells.
“Over the course of our efforts to produce preparative quantities of ApoE in transfected Expi293F cells, we observed the biogenesis of a well-defined high-molecular weight form of this protein on size exclusion chromatography.”
Quote in the paperSubstantial claim - Findingown data
The yield of ApoE3 in Peak 1 from untransfected cells was two orders of magnitude lower than the overexpressed protein (~0.2 μg per mL culture).
“The yield of ApoE3 in this source of Peak 1 was two orders of magnitude lower than the overexpressed protein (~0.2 μg per mL culture).”
Quote in the paperNot a substantial claim - Findingown data
The ApoE protein in Peak 1 binds tightly to antibody HJ15.30.
“the ApoE protein in Peak 1 binds tightly to antibody HJ15.30”
Quote in the paperSubstantial claim - Findingown data
In cultures of untransfected CCF-STTG1 cells, ApoE could only be detected in the fractions corresponding to Peak 1.
“In cultures of untransfected cells, ApoE could only be detected in the fractions corresponding to Peak 1 (Figure 2).”
Quote in the paperSubstantial claim - Findingown data
The LNP size is ~15-20 nm.
“The LNP size (~15–20 nm) is consistent with previous findings with astrocytes from mice, and synthetic, ApoE LNPs.12”
Quote in the paperNot a substantial claim - Findingown data
Individual analysis of the ApoE3-containing fractions from the heparin column revealed the presence of Peaks 1 and 2 in all three fractions.
“Individual analysis of the ApoE3-containing fractions from the heparin column revealed the presence of Peaks 1 and 2 in all three fractions (Supplementary Figure 2).”
Quote in the paperNot a substantial claim - Findingown data
Two well defined peaks were identified by preparative SEC: one eluting as a high molecular weight species (Peak 1) and the other as a lower molecular weight tetrameric species (~158 kDa, Peak 2).
“Two well defined peaks were identified (Figure 1B), one eluting as a high molecular weight species (hereafter referred to as “Peak 1”) and the other as a lower molecular weight tetrameric species (~158 kDa, hereafter referred to as “Peak 2”) (Figure 1B).”
Quote in the paperSubstantial claim - Findingown data
When Peak 1 of ApoE3 was compared to its Peak 2 form, several phospholipids, sphingomyelins (SM) and ceramides (Cer) were found to be enriched.
“When Peak 1 of ApoE3 was compared to its Peak 2 form, several phospholipids, sphingomyelins (SM) and ceramides (Cer) were found to be enriched (Figure 3B,C).”
Quote in the paperNot a substantial claim - Findingown data
Corresponding Peak 1 from negative control untransfected cells did not present detectable fluorescent signal.
“Moreover, corresponding Peak 1 from negative control untransfected cells did not present detectable fluorescent signal”
Quote in the paperSubstantial claim - Findingown data
Lomitapide had no effect on the rate of formation of ApoE3 Peak 1.
“Our studies revealed that lomitapide had no effect on the rate of formation of ApoE3 Peak 1 (Supplementary Figure 9)”
Quote in the paperSubstantial claim - Findingown data
The production of ApoE LNPs by Expi293F cells expressing ApoE3 W210* was markedly impaired.
“The production of ApoE LNPs by Expi293F cells expressing ApoE3 W210* was markedly impaired (Figure 6A,B).”
Quote in the paperSubstantial claim - Findingown data
Enrichment of the BODIPY FL C5-ceramide fluorophore could be detected in ApoE3 Peak 1 but not Peak 2.
“Enrichment of the fluorophore could be detected in ApoE3 Peak 1 but not Peak 2 (Figure 5C).”
- Also stated in: § DISCUSSION · plain
“only ApoE3 Peak 1 contains the selective perinuclear fluorescent probe”
Quote in the paperSubstantial claim - Also stated in: § DISCUSSION · plain
- Findingown data
No cholesterol was detectable in the Peak 2-associated ApoE apoprotein.
“No cholesterol was detectable in the Peak 2-associated ApoE apoprotein (Figure 3A)”
Quote in the paperNot a substantial claim - Findingown data
When transfected cells were centrifuged after 24 h and the already secreted ApoE3 was kept in that medium for an additional two days, the apoprotein was the dominant product.
“Similarly, when transfected cells were centrifuged after 24 h and the already secreted ApoE3 was kept in that medium for an additional two days, the apoprotein was the dominant product (Supplementary Figure 8B).”
Quote in the paperNot a substantial claim - Findingown data
Overexpression of ApoE3 in Expi293F cells consistently led to a >4-fold enrichment of free cholesterol in Peak 1 fractions.
“Overexpression of ApoE3 in Expi293F cells consistently led to a >4-fold enrichment of free cholesterol in Peak 1 fractions (Figure 3A).”
Quote in the paperSubstantial claim - Findingown data
The Peak 1 fraction of the truncated variant showed no enrichment of cholesterol.
“Furthermore, the Peak 1 fraction of the truncated variant showed no enrichment of cholesterol (Figure 6C).”
Quote in the paperSubstantial claim - Findingown data
After correcting for the amount of cholesterol in the untransfected fraction, the molar ratio of cholesterol:ApoE in LNPs harvested as Peak 1 was 15.9 ± 9.8 (based on four independent transfection experiments each with its own untransfected control).
“After correcting for the amount of cholesterol in the untransfected fraction, the molar ratio of cholesterol:ApoE in LNPs harvested as Peak 1 was 15.9 ± 9.8 (based on four independent transfection experiments each with its own untransfected control).”
Quote in the paperSubstantial claim - Findingown data
Analogous enrichment was observed by comparing ApoE3 Peak 1 to an equivalent sample from an untransfected control.
“Analogous enrichment was observed by comparing ApoE3 Peak 1 to an equivalent sample from an untransfected control (Supplementary Figure 7).”
Quote in the paperNot a substantial claim - Findingown data
Expi293F cells express detectable amounts of ABCA1.
“In contrast to prevailing assumptions, we detected the expression of ABCA1 in Expi293F (Figure 5A).”
- Also stated in: § DISCUSSION · plain
“Our work shows that while Expi293F possesses detectable amounts of ABCA1 expression”
Quote in the paperSubstantial claim - Also stated in: § DISCUSSION · plain
- Findingown data
When the growth medium was refreshed every 24 h, the apoprotein remained the dominant product for the next 48 h.
“In contrast, when the growth medium was refreshed every 24 h, the apoprotein remained the dominant product for the next 48 h (Supplementary Figure 8A).”
Quote in the paperSubstantial claim - Findingown data
No cholesteryl ester could be detected in Peak 1 samples.
“nor could any cholesteryl ester be detected in Peak 1 samples.”
Quote in the paperNot a substantial claim - Findingown data
The rate of BODIPY-cholesterol efflux in the presence of Peak 1 compared favorably with that promoted by commercially available plasma-derived HDL.
“Indeed, the rate of BODIPY-cholesterol efflux in the presence of Peak 1 compared favorably with that promoted by commercially available plasma-derived HDL (Supplementary Figure 10).”
Quote in the paperSubstantial claim - Findingown data
Peak 1 of each mutant was purified with a comparable ApoE:cholesterol molar ratio (8.3-39 for ApoE2, 9.1-32 for ApoE4, and 9.5-45 for ApoE4 R251G).
“Peak 1 of each mutant was purified with a comparable ApoE:cholesterol molar ratio (8.3–39 for ApoE2, 9.1–32 for ApoE4, and 9.5–45 for ApoE4 R251G).”
Quote in the paperNot a substantial claim - Findingown data
Preparative SEC chromatograms for all the isoforms revealed a similar pattern to ApoE3.
“Preparative SEC chromatograms for all the isoforms revealed a similar pattern to ApoE3 (Figure 8A,B).”
Quote in the paperNot a substantial claim - Findingown data
Peak 1 undergoes more effective endocytosis than the apoprotein form of ApoE in SH-SY5Y cells.
“As observed by confocal fluorescence microscopy, Peak 1 undergoes more effective endocytosis than the apoprotein form of ApoE (Figure 7C).”
Quote in the paperSubstantial claim - Findingnone given
We have identified and biochemically characterized a lipid nanoparticle (LNP) form of ApoE as a primary product of the protein export system in mammalian cells.
“We have identified and biochemically characterized a lipid nanoparticle (LNP) form of ApoE as a primary product of the protein export system in mammalian cells.”
Quote in the paperNot a substantial claim - Findingown data
Secreted ApoE LNPs are enriched in ceramide and its derivatives as well as cholesterol and related sterols.
“Our analysis has revealed enrichment of both classes of lipids of growing relevance to AD in secreted ApoE LNPs.”
Quote in the paperSubstantial claim- Rests on an assumption: Ceramide and its derivatives as well as cholesterol and related sterols are synthesized in the ER.
- Interpretationown data
A lipid nanoparticle (LNP) form of ApoE is a primary extracellular product of the eukaryotic protein export system.
“We describe a lipid nanoparticle (LNP) form of ApoE as a primary extracellular product of the eukaryotic protein export system.”
Quote in the paperSubstantial claim - Interpretationown data
The C-terminal domain of ApoE plays a key role in LNP biosynthesis.
“The C-terminal domain of ApoE plays a key role in LNP biosynthesis, as the ApoE3 W210* truncation mutant is secreted without lipidation.”
Quote in the paperSubstantial claim - Premisecitation
Bacterial ApoE holoprotein is different from its brain-derived counterpart with respect to key physical and/or chemical properties.
“resulting in holoprotein that is different from its brain-derived counterpart with respect to key physical (e.g., lipid composition) and/or chemical (e.g., post-translational modifications) properties.21”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [21] source
- Interpretationown data
Expi293F (APOE3/E3) cells do express ApoE3.
“implying that contrary to general understanding Expi293F (APOE3/E3) do express ApoE3 (Supplementary Figure 4A).”
Quote in the paperSubstantial claim - Interpretationown data
ApoE3 in Peak 1 retains its native conformation.
“Anti-ApoE antibodies were leveraged to show that ApoE3 in Peak 1 retains its native conformation.”
Quote in the paperSubstantial claim - Interpretationown data
The enrichment of this ceramide analog in Peak 1 is driven by recombinant ApoE3 LNPs expression.
“consistent with the notion that the enrichment of this ceramide analog in Peak 1 is driven by recombinant ApoE3 LNPs expression.”
Quote in the paperNot a substantial claim - Interpretationown data
ApoE3 W210* is a loss-of-function variant as a lipid carrier.
“Our findings support the notion that ApoE3 W210* is a loss-of-function variant as a lipid carrier.”
Quote in the paperSubstantial claim- Rests on an assumption: ApoE3 W210* is the most common truncated ApoE variant found in humans and lacks the C-terminal end that plays a major role in lipid-binding.
- Interpretationown data
The distinction between Peak 1 and Peak 2 starts at the earliest stages of biogenesis before the protein reaches the plasma membrane.
“suggesting that the distinction between Peak 1 and Peak 2 starts at the earliest stages of biogenesis before the protein reaches the plasma membrane.”
Quote in the paperSubstantial claim - Interpretationown data
Our data suggests a likely role for intracellular nucleation.
“At the same time, our data showing that freshly exported ApoE LNPs are considerably better substrates of ATP-dependent lipid pumps than the apoprotein suggests a likely role for intracellular nucleation.”
Quote in the paperSubstantial claim - Interpretationown data
Secretion of the lipid-free apoprotein may be an artifact of its overexpression.
“our data leads us to propose that secretion of the lipid-free apoprotein may be an artifact of its overexpression”
Quote in the paperSubstantial claim- Rests on an assumption: Overexpression of the APOE gene in mammalian cells yields apo-ApoE as the predominant secreted form of the protein.
- Interpretationreasoning
ApoE export by cells such as astrocytes in the brain and hepatocytes in the liver are regulated in a manner that allows LNP nucleation to occur while the protein is being trafficked through the secretory apparatus of these cells.
“that ApoE export by cells such as astrocytes in the brain and hepatocytes in the liver are regulated in a manner that allows LNP nucleation to occur while the protein is being trafficked through the secretory apparatus of these cells.”
Quote in the paperSubstantial claim- Rests on an assumption: The dogma is that the glycosylated tetramer is assembled into an LNP through the action of ATP-dependent lipid pumps (e.g., ABCA1, ABCA7).
- Interpretationnone given
This work represents the first study in which a recombinant LNP form of the protein has been purified and analyzed.
“To our knowledge, this work represents the first study in which a recombinant LNP form of the protein has been purified and analyzed.”
Quote in the paperSubstantial claim- Rests on an assumption: An analogous mechanism has not been interrogated for ApoE, the dominant protein in HDL-like LNPs found in CSF.
- May combine two claims. 20
- Classified as probably not a substantial claim. 23
May combine two claims.
PremisecitationApoE is a key constituent of plasma LNPs although the secreted apoprotein is undetectable in plasma.
“apolipoprotein E (ApoE) is a key constituent of plasma LNPs7, 8 although the secreted apoprotein is undetectable in plasma.9, 10”
Quote in the paperSubstantial claim3 of 4 sources checked- cites [7] source
- cites [8] source
- cites [9] source
- cites [10] source
The paper’s Brief History section describes APOE in plasma very-low-density lipoprotein, supporting its association with lipoprotein particles. But “Or Quantity?” reports measured plasma APOE levels across multiple studies, contrary to the claim that the apoprotein is undetectable in plasma. (LLM, conf=0.88)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationIn the cerebrospinal fluid (CSF), HDL-like LNPs predominate, although their major protein constituent is ApoE, not ApoA-I.
“In the cerebrospinal fluid (CSF), HDL-like LNPs predominate, although their major protein constituent is ApoE, not ApoA-I.11, 12”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [11] source
- cites [12] source
The Introduction (page unavailable) says ApoE is present in HDL-like lipoproteins in the CNS and describes astrocyte-secreted ApoE particles as HDL-like. It does not establish that HDL-like particles predominate specifically in CSF or that ApoE, rather than ApoA-I, is their major protein constituent. (LLM, conf=0.82)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAPOE2 benefits longevity.
“APOE2 is protective against late-onset AD (hereafter referred to as AD) and benefits longevity, but greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.14–16”
Quote in the paperNot a substantial claim1 of 3 sources checkedMay combine two claims.
PremisecitationApoE in the brain and CSF is synthesized within the central nervous system and is not derived from other organs.
“ApoE in the brain and CSF is synthesized within the central nervous system and is not derived from other organs.13”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [13] source
The Results report that brain astrocytes synthesize apoE and that the unchanged CSF apoE phenotype after liver transplantation implies most CSF apoE is produced locally. The paper says “most” or “the majority,” not that all apoE in the brain and CSF is synthesized within the CNS or that none is derived from other organs. Page numbers were not provided in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAPOE2 is protective against late-onset Alzheimer's Disease.
“APOE2 is protective against late-onset AD (hereafter referred to as AD) and benefits longevity, but greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.14–16”
Quote in the paperNot a substantial claim1 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAPOE2 greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.
“APOE2 is protective against late-onset AD (hereafter referred to as AD) and benefits longevity, but greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.14–16”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [14] source
- cites [15] source
- cites [16] source
The Introduction says APOE2 is protective against late-onset Alzheimer’s disease and is associated with longevity. The Discussion says only a small percentage of humans with two APOE2 copies develop hyperlipidemia, but it does not establish a greatly increased risk or identify those human cases specifically as type III hyperlipidemia. No page numbers are provided in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAPOE4 is the strongest genetic risk factor for Alzheimer's Disease.
“APOE4 is the strongest genetic risk factor for AD not only increasing the odds ratio of developing the disease but also lowering the age of onset in a dose-dependent fashion.17, 18”
Quote in the paperNot a substantial claim1 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationProtocols have been developed to formulate apoprotein sources into LNPs.
“While protocols have been developed to formulate these apoprotein sources into LNPs (a process that is often referred to as “lipidation”), the resulting nanoparticles typically lack the characteristic lipid complexity of their plasma- or CSF-derived counterparts.12, 26”
Quote in the paperNot a substantial claim1 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationOnly proteins with five unique detected peptides each with a peptide spectral match score cutoff greater than 300 were considered.
“only proteins, with five unique detected peptides each with a peptide spectral match score cutoff greater than 300, were considered.33”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [33] source
The PSM List section describes 300 as a good Byonic score, and the Advanced Tab section says a reasonable score threshold for most searches falls between 200 and 400. The Protein List section defines the unique-peptide count, but the paper does not prescribe five unique peptides per protein or a universal cutoff above 300; those appear to be the citing study’s selection criteria (page numbers unavailable). (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSialylation has also been observed on brain-derived ApoE as well as recombinant ApoE from 293F cells.
“a post-translation modification that has also been observed on brain-derived ApoE as well as recombinant ApoE from 293F cells.34”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [34] source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationA similar proteolyzed form of ApoE has been observed in other brain-derived cell lines.
“A similar proteolyzed form of ApoE has been observed in other brain-derived cell lines.38”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [38] source
The Discussion reports ApoE fragments in live hippocampal and cortical neuronal cultures, supporting the observation of proteolyzed ApoE in brain-derived cells. But the Materials and Methods identifies these as primary rat neuronal cultures, not cell lines; the claim’s cell-line specificity is unsupported. No page numbers are available in our copy. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSecreted ApoE is generally presumed to be converted into HDL-like LNPs by astrocytes.
“As the major lipid carrier in the brain, secreted ApoE is generally presumed to be converted into HDL-like LNPs by astrocytes.”
Quote in the paperNot a substantial claim2 of 5 sources checked- cites [22] source
- cites [44] source
- cites [45] source
The “Apolipoproteins (apoE) in the brain” section (page unavailable) identifies astrocytes as the major source of ApoE and says glial cells secrete ApoE-containing lipoproteins. The “Lipoprotein Lipidation” section describes ApoE being lipidated to form particles, but our copy does not say that secreted ApoE is subsequently converted by astrocytes into HDL-like particles. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [46] source
The Alzheimer's disease section discusses astrocytic clearance of amyloid-β, and the References list an astrocyte–apolipoprotein E association in plaques. Neither addresses whether astrocytes convert secreted ApoE into HDL-like lipoprotein particles (searched: ApoE, HDL-like LNPs, lipoprotein and cholesterol). (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [47] source
- Rests on an assumption: ApoE is the major lipid carrier in the brain.
May combine two claims.
PremisecitationATP-binding cassette (ABC) subfamily A1 (ABCA1) catalyzes the rate-limiting step in apolipoprotein-derived LNP formation, and it is the first extracellular partner of secreted ApoE.
“ATP-binding cassette (ABC) subfamily A1 (ABCA1) catalyzes the rate-limiting step in apolipoprotein-derived LNP formation, and it is the first extracellular partner of secreted ApoE.39”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [39] source
The Abstract and Discussion (page not available in our copy) show that ABCA1 is important for normal lipidation of astrocyte-secreted apoE-containing lipoproteins. They do not establish that ABCA1 catalyzes a rate-limiting step in lipoprotein nanoparticle formation or that it is the first extracellular partner of secreted apoE. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationBiosynthesis of ApoB LNPs requires the activity of the microsomal triglyceride transfer protein (MTTP).
“Biosynthesis of ApoB LNPs requires the activity of the microsomal triglyceride transfer protein (MTTP). 41”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [41] source
May combine two claims.
PremisecitationThese LNPs undergo receptor-mediated endocytosis in neurons and glia cells where their lipid constituents are disassembled in lysosomes to supply these constituents to recipient cells.
“In turn, these LNPs undergo receptor-mediated endocytosis in neurons and glia cells where their lipid constituents are disassembled in lysosomes to supply these constituents to the recipient cells.22, 44–47”
Quote in the paperSubstantial claim2 of 5 sources checked- cites [22] source
- cites [44] source
- cites [45] source
The Cholesterol Homeostasis section describes receptor-mediated uptake of apoE-containing lipoproteins by neurons, followed by processing of their cholesterol in lysosomes for delivery to membranes. The LDL receptor family section describes uptake receptors in both neurons and glia. The paper does not establish that all lipid constituents of these particles are disassembled in lysosomes, or explicitly describe that full sequence in glial cells. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [46] source
The ‘Supply of energy substrates’ section describes astrocyte-to-neuron transfer of lactate and the possible production of ketone bodies, not uptake of lipid nanoparticles. Searches for LNPs, receptor-mediated endocytosis, and lysosomal lipid breakdown found no passage addressing the claimed process. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [47] source
May combine two claims.
Findingown dataWhen the APOE gene is overexpressed in mammalian cells, the apoprotein is the dominant secreted product, but an LNP form of ApoE is also observed.
“Whereas the apoprotein is the dominant secreted product when the APOE gene is overexpressed in mammalian cells, an LNP form of ApoE is also observed.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataApoE was sialylated.
“ApoE was sialylated (Supplementary Figure 3), a post-translation modification that has also been observed on brain-derived ApoE as well as recombinant ApoE from 293F cells.34”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataThree peaks containing ApoE3 were obtained from the first heparin enrichment step.
“Three peaks containing ApoE3 were obtained from the first heparin enrichment step (Figure 1A).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn CCF-STTG1 culture, the majority of ApoE3 in Peak 2 was modified (presumably via proteolysis) into a 25 kDa polypeptide, while the ApoE associated with Peak 1 remained unmodified.
“Interestingly, whereas a majority of ApoE3 in Peak 2 from the CCF-STTG1 culture was modified (presumably via proteolysis) into a polypeptide with an apparent molecular weight of 25 kDa, the ApoE associated with Peak 1 remained unmodified (Figure 2).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenAll other variants, save for the truncated W210* variant, eluted with identical retention times as ApoE3.
“All other variants, save for the truncated W210* variant, eluted with identical retention times as ApoE3.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Findingnone givenOther cell lines synthesize the same secreted product.
“Other cell lines were subsequently shown to synthesize the same secreted product.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn untransfected Expi293F culture, no A280 signal was detected in the SEC fraction corresponding to Peak 2, but a peak of ~40% intensity as that obtained from ApoE3-transfected cells was observed in the fraction corresponding to Peak 1.
“Whereas no A280 signal was detected in the SEC fraction corresponding to Peak 2 of the untransfected culture, a peak of ~40% intensity as that obtained from ApoE3-transfected cells was observed in the fraction corresponding to Peak 1 (Supplementary Figure 4A).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Findingown dataOn average (N=3) 67 ± 10 μg of purified ApoE3 was obtained per mL of culture, 12 ± 1 μg of which eluted in Peak 1 and 56 ± 10 μg in Peak 2.
“On average (N=3) 67 ± 10 μg of purified ApoE3 was obtained per mL of culture 12 ± 1 μg of which eluted in Peak 1 and 56 ± 10 μg in Peak 2.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataOn the first day post-transfection, most of the exported ApoE3 appeared as Peak 2, with the relative abundance of Peak 1 increasing over the next 48 h.
“On the first day post-transfection, most of the exported ApoE3 appeared as Peak 2 with the relative abundance of Peak 1 increasing over the next 48 h (Figure 4).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataApoE4 protein yield was 30 ± 8 μg per mL of culture, with 9.6 ± 2.4 μg associated with Peak 1 and 21 ± 6 μg with Peak 2.
“A total of 30 ± 8 μg ApoE4 was recovered per mL of culture, 9.6 ± 2.4 μg of which was associated with Peak 1 and 21 ± 6 μg with Peak 2.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataApoE4 R251G protein yield was 52 ± 13 μg per mL of culture, with 7.9 ± 1.2 μg associated with Peak 1 and 44 ± 12 μg with Peak 2.
“For ApoE4 R251G, the total yield was 52 ± 13 μg per mL of culture, 7.9 ± 1.2 μg of which was associated with Peak 1 and 44 ± 12 μg with Peak 2.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataThe Peak 1 protein yield was highest in the case of ApoE4.
“The Peak 1 protein yield was highest in the case of ApoE4 (Figure 8C).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataApoE2 protein yield was 42 ± 14 μg per mL of culture, with 9.0 ± 3.1 μg associated with Peak 1 and 33 ± 11 μg with Peak 2.
“A total of 42 ± 14 μg ApoE2 was recovered per mL of culture, 9.0 ± 3.1 μg of which was associated with Peak 1 and 33 ± 11 μg with Peak 2.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataMinimal amounts of BODIPY-cholesterol were found in the media of cells treated with Peak 2, while the LNP form (Peak 1) promoted efflux of substantial amounts of BODIPY-cholesterol in a time-dependent manner.
“While minimal amounts of BODIPY-cholesterol were found in the media of cells treated with Peak 2, the LNP form (Peak 1) promoted efflux of substantial amounts of BODIPY-cholesterol in a time-dependent manner (Figure 7A,B).”
- Also stated in: § DISCUSSION · hedged
“our data showing that freshly exported ApoE LNPs are considerably better substrates of ATP-dependent lipid pumps than the apoprotein”
Quote in the paperSubstantial claim- Also stated in: § DISCUSSION · hedged
May combine two claims.
PremisecitationBacterial ApoE is expressed as inclusion bodies that must be denatured, refolded, and optionally converted into LNPs using non-physiological procedures.
“Bacterial ApoE is expressed as inclusion bodies that must be denatured, refolded, and optionally converted into LNPs using non-physiological procedures, resulting in holoprotein that is different from its brain-derived counterpart with respect to key physical (e.g., lipid composition) and/or chemical (e.g., post-translational modifications) properties.21”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [21] source
May combine two claims.
Interpretationown dataOur findings make a compelling case for the physiological and possibly even pathophysiological role of secreted ApoE LNPs.
“Our findings make a compelling case for the physiological and possibly even pathophysiological role of secreted ApoE LNPs.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenEach lipid peak integration was manually inspected to ensure accurate and consistent quantitation.
“Each lipid peak integration was manually inspected to ensure accurate and consistent quantitation.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenAll experiments were performed in triplicates for each batch of purified proteins.
“all experiments were performed in triplicates for each batch of purified proteins.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe presence of the mutation was confirmed by sequencing.
“The presence of the mutation was confirmed by sequencing (Elim Biopharmaceuticals, Hayward CA).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationProteins were held to a false discovery rate of 1% using the standard reverse-decoy technique.
“Proteins were held to a false discovery rate of 1% using the standard reverse-decoy technique.32”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [32] source
May combine two claims.
PremisecitationApoE3 W210* is known to be expressed and secreted, and this truncation is believed to impart a partial loss-of-function phenotype as judged by clinical data from carriers of this allele.
“Although this truncated variant is known to be expressed and secreted, this truncation is believed to impart a partial loss-of-function phenotype as judged by clinical data from carriers of this allele.42”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [42] source
May combine two claims.
Interpretationown dataLNP biosynthesis appears to be a readily saturable cellular process that can be easily overwhelmed by conditions ideal for protein overexpression.
“Thus, LNP biosynthesis appears to be a readily saturable cellular process that can be easily overwhelmed by conditions ideal for protein overexpression.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIt is generally believed that astrocytes are the primary biosynthetic loci of ApoE-containing LNPs.
“It is generally believed that astrocytes are the primary biosynthetic loci of ApoE-containing LNPs, and that one function of these secreted HDL-like particles is to supply lipids to neurons via receptor-mediated endocytosis, as well as to assist in lipid export from glia cells.54”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [54] source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationOne function of these secreted HDL-like particles is to supply lipids to neurons via receptor-mediated endocytosis, as well as to assist in lipid export from glia cells.
“It is generally believed that astrocytes are the primary biosynthetic loci of ApoE-containing LNPs, and that one function of these secreted HDL-like particles is to supply lipids to neurons via receptor-mediated endocytosis, as well as to assist in lipid export from glia cells.54”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [54] source
May combine two claims.
Interpretationown dataRecombinant ApoE LNPs are structurally and compositionally most similar to HDL particles in plasma as well as the relatively less well characterized LNPs that have been isolated from the CSF.
“A variety of physical and chemical methods have been deployed to establish that these recombinant ApoE LNPs are structurally and compositionally most similar to HDL particles in plasma as well as the relatively less well characterized LNPs that have been isolated from the CSF.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe ER is the primary site of lipid synthesis in most cells.
“the fact that the ER is the primary site of lipid synthesis in most cells,51”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [51] source
The authors state this as an assumption.
Proteolysis with Trypsin/LysC was assumed to be fully specific.
“Proteolysis with Trypsin/LysC was assumed to be fully specific.”
The paper relies on this without support.
Lomitapide is an FDA-approved drug used to treat hypercholesterolemia based on its ability to inhibit MTTP.
“Lomitapide is an FDA-approved drug that is used to treat hypercholesterolemia based on its ability to inhibit MTTP.”
The paper relies on this without support.
ApoE3 W210* is the most common truncated ApoE variant found in humans and lacks the C-terminal end that plays a major role in lipid-binding.
“the most common truncated ApoE variant found in humans that lacks the C-terminal end which plays a major role in lipid-binding.”
The paper relies on this without support.
Overexpression of the APOE gene in mammalian cells yields apo-ApoE as the predominant secreted form of the protein.
“The widespread observation that overexpression of the APOE gene in mammalian cells yields apo-ApoE as the predominant secreted form of the protein”
The paper relies on this without support.
The dogma is that the glycosylated tetramer is assembled into an LNP through the action of ATP-dependent lipid pumps (e.g., ABCA1, ABCA7).
“has led to the dogma that the glycosylated tetramer is assembled into an LNP through the action of ATP-dependent lipid pumps (e.g., ABCA1, ABCA7).”
The paper relies on this without support.
Ceramide and its derivatives as well as cholesterol and related sterols are synthesized in the ER.
“Notably, ceramide and its derivatives as well as cholesterol and related sterols are synthesized in the ER.”
The paper relies on this without support.
ApoE is the most important genetic determinant of late-onset Alzheimer’s Disease.
“ApoE is the most important genetic determinant of late-onset Alzheimer’s Disease.”
The paper relies on this without support.
ApoE is the major lipid carrier in the brain.
“ApoE is the major lipid carrier in the brain.”
The paper relies on this without support.
An analogous mechanism has not been interrogated for ApoE, the dominant protein in HDL-like LNPs found in CSF.
“an analogous mechanism has not been interrogated for ApoE, the dominant protein in HDL-like LNPs found in CSF.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The high molecular weight ApoE fraction undergoes more effective receptor-mediated endocytosis than the lipid-poor species.
“The former particle not only elicits cholesterol efflux at a higher rate from cells with ATP-dependent lipid pump activity but it also undergoes more effective receptor mediated endocytosis.”
From Association of Rare <i>APOE</i> Missense Variants R189C and W276C With Risk of Alzheimer Disease (2026) · cites this paper as [12]
Secreted ApoE resolves into a high molecular weight, lipid-bound lipoprotein particle (Peak 1) and a lower molecular weight, lipid-poor species (Peak 2).
“secreted ApoE resolves into a high molecular weight, lipid-bound lipoprotein particle (previously termed Peak 1) and a lower molecular weight, lipid-poor species (previously termed Peak 2) 12 .”
From Association of Rare <i>APOE</i> Missense Variants R189C and W276C With Risk of Alzheimer Disease (2026) · cites this paper as [12]
The high molecular weight ApoE fraction elicits cholesterol efflux at a higher rate from cells with ATP-dependent lipid pump activity than the lipid-poor species.
“The former particle not only elicits cholesterol efflux at a higher rate from cells with ATP-dependent lipid pump activity but it also undergoes more effective receptor mediated endocytosis.”
From Association of Rare <i>APOE</i> Missense Variants R189C and W276C With Risk of Alzheimer Disease (2026) · cites this paper as [12]
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APOE4 homozygosity represents a distinct genetic form of Alzheimer’s disease
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Nascent astrocyte particles differ from lipoproteins in CSF
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Is ABCA1 a lipid transfer protein?
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The role of APOE on lipid homeostasis and inflammation in normal brains
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<i>APOE3</i> -Jacksonville (V236E) variant reduces self-aggregation and risk of dementia
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APOE2 is associated with longevity independent of Alzheimer’s disease
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Extracellular Proteolysis of Apolipoprotein E (apoE) by Secreted Serine Neuronal Protease
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Apolipoprotein E secreted by astrocytes forms antiparallel dimers in discoidal lipoproteins
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ABCA1 activity is associated with reduced Alzheimer’s Disease risk in APOE ε4 non-carriersPreprint
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Self-citation
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Multiscale modeling guided potency assessment of mRNA-lipid nanoparticles
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Association of Rare <i>APOE</i> Missense Variants R189C and W276C With Risk of Alzheimer Disease
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Self-citation
- Authors
- Hernandez Arriaza, R., Reil, D., Fatuzzo, N., Fu, M., Dai, Y., Fernandez Martinez, D., Jiang, H., Holtzman, D. M., Greicius, M. D., & Khosla, C.
- Affiliations
- Department of Chemistry
- Stanford University (US)
- Stanford SLAC CryoEM Initiative
- Washington University in St. Louis (US)
- Corresponding author
- Khosla, Chaitan
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2025-10-24
- Volume
- 64
- Issue
- 21
- Pages
- 4387-4399
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- PMC
- PMC12616577
- OpenAlex
- W4415518361
- Cited by
- 2
- References
- 56
- Citations by year
- 2026: 2
- FWCI
- 1.29
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- Funders
- Wu Tsai Neurosciences Institute, Stanford University
- National Institute on Aging (P30AG066515, R35AG072290)
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Health Sciences › Medicine › Surgery › Cholesterol and Lipid Metabolism
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
- Keywords
- apolipoprotein E, lipid nanoparticles, apoE secretion, APOE ε4, APOE3, APOE2, C-terminal domain, lipid modification, astrocytoma cells, Alzheimer's disease pathogenesis, cholesterol transport, protein export
- MeSH terms
- Alzheimer Disease, Animals, Apolipoproteins E, Humans, Liposomes, Cell Line, Tumor, Apolipoprotein E3, Apolipoprotein E4, Nanoparticles
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-31.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-31.
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