Cited by 2Alzheimer's disease research and treatmentsCholesterol and Lipid MetabolismLipid Membrane Structure and Behavior

ApoE is Secreted as a Lipid Nanoparticle by Mammalian Cells: Implications for Alzheimer’s Disease Pathogenesis

Open access
Hernandez Arriaza, Ricardo, Reil, Dylan, Fatuzzo, Nina, Fu, Mengying, Dai, Yuqin, Fernandez Martinez, David, Jiang, Hong, Holtzman, David M. +2 more·2025·Biochemistry

Abstract

The brain is the most cholesterol-rich organ in the body, and ApoE is the main lipid carrier protein in the brain. Although very little, if any, ApoE exists in its apoprotein form in physiological fluids, recombinant ApoE is typically prepared in a lipid-free state to study its physiological functions. We describe a lipid nanoparticle (LNP) form of ApoE as a primary extracellular product of the eukaryotic protein export system. Whereas the apoprotein is the dominant secreted product when the APOE gene is overexpressed in mammalian cells, an LNP form of ApoE is also observed. The LNP form is, however, the major secreted product from unmodified CCF-STTG1 astrocytoma cells. The C-terminal domain of ApoE plays a key role in LNP biosynthesis as the ApoE3 W210* truncation mutant is secreted without lipidation. Secreted ApoE LNPs are markedly better substrates than the apoprotein itself for further growth via the action of ATP-dependent lipid pumps. Compared to ApoE3 or the Alzheimer’s disease-protective ApoE2 variant, the recovered yield of the LNP form of the disease-predisposing ApoE4 variant is higher. Intriguingly, the LNP yield of the rare disease-protective R251G variant of ApoE4 is comparable to that of ApoE3 and ApoE2. Analogous to the well-documented intracellular biosynthesis of ApoB-containing LNPs, the biogenesis and pathophysiological relevance of the LNP form of ApoE warrant further investigation.

AI snapshot

Written from the paper’s full text.

TL;DR

ApoE is secreted by mammalian cells not only as apoprotein but also as a lipid nanoparticle (LNP), and this LNP form is the major secreted product from unmodified CCF-STTG1 astrocytoma cells. The C-terminal domain is required for lipidation, and ApoE4 LNP yield is higher than ApoE3/ApoE2, while the protective R251G variant yields levels comparable to ApoE3/ApoE2.

Key findings

  • Recombinant ApoE3 from Expi293F cells resolved into two SEC peaks: a high-molecular-weight LNP form (“Peak 1”) and a ~158 kDa tetrameric apoprotein form (“Peak 2”). On average (N=3), 67 ± 10 μg purified ApoE3 was obtained per mL culture, with 12 ± 1 μg in Peak 1 and 56 ± 10 μg in Peak 2.
  • Peak 1 ApoE3 LNPs were ~15–20 nm by NSEM, contained cholesterol (cholesterol:ApoE molar ratio 15.9 ± 9.8 after correction), and were enriched in phospholipids, sphingomyelins, and ceramides by LC/MS targeted lipidomics (762 lipid species, 44 lipid classes).
  • The ApoE3 W210* truncation mutant was secreted without lipidation, and its Peak 1 fraction showed no cholesterol enrichment, supporting a key role for the C-terminal domain in LNP biosynthesis.
  • ApoE4 gave the highest Peak 1 protein yield among isoforms tested; total yields (N=3) were ApoE2 42 ± 14 μg/mL (Peak 1 9.0 ± 3.1), ApoE4 30 ± 8 μg/mL (Peak 1 9.6 ± 2.4), and ApoE4 R251G 52 ± 13 μg/mL (Peak 1 7.9 ± 1.2). Peak 1 ApoE3 promoted BODIPY-cholesterol efflux and SH-SY5Y endocytosis better than Peak 2 apoprotein.

Methods

  • ApoE variants were expressed in Expi293F, HepG2, and CCF-STTG1 cells; secreted protein was purified by heparin affinity chromatography followed by size-exclusion chromatography, with Peaks 1 and 2 collected.
  • Characterization used Western blotting, negative-stain EM/cryo-TEM, mass-spectrometric proteomics, sialidase deglycosylation, cholesterol assays, and LC/MS targeted lipidomics.
  • Functional assays measured BODIPY-cholesterol efflux from CCF-STTG1 cells and ApoE uptake by SH-SY5Y cells; isoform yields and lipid ratios were compared across ApoE2, ApoE3, ApoE4, and ApoE4 R251G.

Limitations

  • The paper does not state a formal limitations section. It notes that the implications for AD pathogenesis “remain to be explored,” that the extent to which ABCA1 acts on ApoE3 Peak 1 needs further exploration, and that mechanisms of LNP biosynthesis in the ER and Golgi warrant further research.
  • Evident from the text: most experiments use recombinant overexpression in cell lines, and the authors state that LNP biosynthesis is a readily saturable process that can be overwhelmed by overexpression conditions, making apoprotein secretion potentially an artifact of overexpression.
  • Evident from the text: the work is in vitro/cell-line based and does not establish in vivo brain or CSF relevance; the molecular details of the ABCA1–ApoE interface remain unknown.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1021/acs.biochem.5c00503

Cites

56 of 56 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

44 of 78 cited sources checked · 15 supported · 1 flagged · accuracy not yet measured

  • Premisecitation

    Proteinaceous lipid nanoparticles (LNPs) are the main vehicles for lipid transport between cells in mammals.

    “Proteinaceous lipid nanoparticles (LNPs) are the main vehicles for lipid transport between cells in mammals.1–4”
    Quote in the paperSubstantial claim3 of 4 sources checked
    • cites [1] source

      The “CNS APOE protein structure” and “APOE CNS lipoproteins” sections describe lipid-associated lipoprotein particles and their role in lipid transport. They do not establish that these particles are the main vehicles for lipid transport between cells throughout mammals; that broader, comparative claim is unsupported by this source. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [2] source

      The Introduction (page unavailable) says APOE circulates as part of a lipoprotein and plays an essential role in cholesterol and lipid metabolism. The section on APOE and mitochondrial function calls APOE a major modulator of cellular lipoprotein and cholesterol transport. Neither passage establishes that proteinaceous lipid nanoparticles are the main vehicles for lipid transport between cells throughout mammals. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
    • cites [3] source
    • cites [4] source
  • Premisecitation

    ApoE is associated with virtually all plasma LNPs, albeit in varying amounts.

    “ApoE is associated with virtually all plasma LNPs, albeit in varying amounts.5”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [5] source

      The Discussion (page unavailable) reports APOE across multiple cerebrospinal-fluid lipoprotein populations of various sizes. That supports a broad association in CSF, but not the claim that APOE is associated with virtually all plasma lipoprotein particles in varying amounts. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Premisecitation

    APOE4 lowers the age of onset of Alzheimer's Disease in a dose-dependent fashion.

    “APOE4 is the strongest genetic risk factor for AD not only increasing the odds ratio of developing the disease but also lowering the age of onset in a dose-dependent fashion.17, 18”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [17] source
    • cites [18] source
  • Premisecitation

    Mammalian expression systems retain physiologically relevant secretory, folding and post-translational modification mechanisms.

    “Mammalian expression systems retain physiologically relevant secretory, folding and post-translational modification mechanisms, but column-purified recombinant ApoE is invariably prepared as apoprotein.22–25”
    Quote in the paperSubstantial claim3 of 4 sources checked
    • cites [22] source
    • cites [23] source

      The Results section on apoE3-Jac self-association reports using apoE produced in HEK293 cells, but does not discuss whether mammalian expression preserves physiologically relevant secretion, folding, or post-translational modification mechanisms. Searches for those mechanisms found no passage addressing the claim; page numbers were not available in our copy. (LLM, conf=0.72)

      Experimental — accuracy not yet measured
    • cites [24] source

      The Methods (Cell Culture; page unavailable) report that HEK293T cells expressed ApoE and that ApoE was detected in their conditioned medium, supporting secretion from a mammalian expression system. The paper does not establish that such systems retain physiologically relevant folding or post-translational modification mechanisms. (LLM, conf=0.78)

      Experimental — accuracy not yet measured
    • cites [25] source

      In “Physiologically produced lipidated ApoE reproducibly activates MAP-kinase signaling in human neurons” (page unavailable), the paper reports that HEK293-produced ApoE is secreted and has a glycosylation state, supporting the secretory and post-translational-modification parts of the claim. It also finds that HEK293-produced ApoE has signaling properties similar to physiologically produced ApoE. The copy does not establish that mammalian expression systems retain physiologically relevant folding mechanisms, or make that general claim about expression systems. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Premisecitation

    The resulting nanoparticles typically lack the characteristic lipid complexity of their plasma- or CSF-derived counterparts.

    “the resulting nanoparticles typically lack the characteristic lipid complexity of their plasma- or CSF-derived counterparts.12, 26”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [12] source

      In “Lipidated, recombinant ApoE lipoproteins resemble astrocyte-secreted ApoE lipoproteins” (page not available), the paper describes nanoparticles assembled from recombinant ApoE and a selected artificial lipid, supporting the claim that these particles have a limited lipid composition. It does not compare their lipid complexity with plasma- or CSF-derived particles or establish that this is typical of resulting nanoparticles generally. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
    • cites [26] source
  • May combine two claims. 20
  • Classified as probably not a substantial claim. 23
  • May combine two claims.

    Premisecitation

    ApoE is a key constituent of plasma LNPs although the secreted apoprotein is undetectable in plasma.

    “apolipoprotein E (ApoE) is a key constituent of plasma LNPs7, 8 although the secreted apoprotein is undetectable in plasma.9, 10”
    Quote in the paperSubstantial claim3 of 4 sources checked
    • cites [7] source
    • cites [8] source
    • cites [9] source
    • cites [10] source

      The paper’s Brief History section describes APOE in plasma very-low-density lipoprotein, supporting its association with lipoprotein particles. But “Or Quantity?” reports measured plasma APOE levels across multiple studies, contrary to the claim that the apoprotein is undetectable in plasma. (LLM, conf=0.88)

      Checked by a reasoning model — may be wrong.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    In the cerebrospinal fluid (CSF), HDL-like LNPs predominate, although their major protein constituent is ApoE, not ApoA-I.

    “In the cerebrospinal fluid (CSF), HDL-like LNPs predominate, although their major protein constituent is ApoE, not ApoA-I.11, 12”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [11] source
    • cites [12] source

      The Introduction (page unavailable) says ApoE is present in HDL-like lipoproteins in the CNS and describes astrocyte-secreted ApoE particles as HDL-like. It does not establish that HDL-like particles predominate specifically in CSF or that ApoE, rather than ApoA-I, is their major protein constituent. (LLM, conf=0.82)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    APOE2 benefits longevity.

    “APOE2 is protective against late-onset AD (hereafter referred to as AD) and benefits longevity, but greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.14–16”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites [14] source
    • cites [15] source
    • cites [16] source
  • May combine two claims.

    Premisecitation

    ApoE in the brain and CSF is synthesized within the central nervous system and is not derived from other organs.

    “ApoE in the brain and CSF is synthesized within the central nervous system and is not derived from other organs.13”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [13] source

      The Results report that brain astrocytes synthesize apoE and that the unchanged CSF apoE phenotype after liver transplantation implies most CSF apoE is produced locally. The paper says “most” or “the majority,” not that all apoE in the brain and CSF is synthesized within the CNS or that none is derived from other organs. Page numbers were not provided in our copy. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    APOE2 is protective against late-onset Alzheimer's Disease.

    “APOE2 is protective against late-onset AD (hereafter referred to as AD) and benefits longevity, but greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.14–16”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites [14] source
    • cites [15] source
    • cites [16] source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    APOE2 greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.

    “APOE2 is protective against late-onset AD (hereafter referred to as AD) and benefits longevity, but greatly increases the risk of type III hyperlipidemia when present in two copies in some cases.14–16”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites [14] source
    • cites [15] source
    • cites [16] source

      The Introduction says APOE2 is protective against late-onset Alzheimer’s disease and is associated with longevity. The Discussion says only a small percentage of humans with two APOE2 copies develop hyperlipidemia, but it does not establish a greatly increased risk or identify those human cases specifically as type III hyperlipidemia. No page numbers are provided in our copy. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    APOE4 is the strongest genetic risk factor for Alzheimer's Disease.

    “APOE4 is the strongest genetic risk factor for AD not only increasing the odds ratio of developing the disease but also lowering the age of onset in a dose-dependent fashion.17, 18”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [17] source
    • cites [18] source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Protocols have been developed to formulate apoprotein sources into LNPs.

    “While protocols have been developed to formulate these apoprotein sources into LNPs (a process that is often referred to as “lipidation”), the resulting nanoparticles typically lack the characteristic lipid complexity of their plasma- or CSF-derived counterparts.12, 26”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [12] source
    • cites [26] source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductcitation

    Only proteins with five unique detected peptides each with a peptide spectral match score cutoff greater than 300 were considered.

    “only proteins, with five unique detected peptides each with a peptide spectral match score cutoff greater than 300, were considered.33”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [33] source

      The PSM List section describes 300 as a good Byonic score, and the Advanced Tab section says a reasonable score threshold for most searches falls between 200 and 400. The Protein List section defines the unique-peptide count, but the paper does not prescribe five unique peptides per protein or a universal cutoff above 300; those appear to be the citing study’s selection criteria (page numbers unavailable). (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Sialylation has also been observed on brain-derived ApoE as well as recombinant ApoE from 293F cells.

    “a post-translation modification that has also been observed on brain-derived ApoE as well as recombinant ApoE from 293F cells.34”
    Quote in the paperNot a substantial claim1 of 1 sources checked
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    A similar proteolyzed form of ApoE has been observed in other brain-derived cell lines.

    “A similar proteolyzed form of ApoE has been observed in other brain-derived cell lines.38”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [38] source

      The Discussion reports ApoE fragments in live hippocampal and cortical neuronal cultures, supporting the observation of proteolyzed ApoE in brain-derived cells. But the Materials and Methods identifies these as primary rat neuronal cultures, not cell lines; the claim’s cell-line specificity is unsupported. No page numbers are available in our copy. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Secreted ApoE is generally presumed to be converted into HDL-like LNPs by astrocytes.

    “As the major lipid carrier in the brain, secreted ApoE is generally presumed to be converted into HDL-like LNPs by astrocytes.”
    Quote in the paperNot a substantial claim2 of 5 sources checked
    • cites [22] source
    • cites [44] source
    • cites [45] source

      The “Apolipoproteins (apoE) in the brain” section (page unavailable) identifies astrocytes as the major source of ApoE and says glial cells secrete ApoE-containing lipoproteins. The “Lipoprotein Lipidation” section describes ApoE being lipidated to form particles, but our copy does not say that secreted ApoE is subsequently converted by astrocytes into HDL-like particles. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
    • cites [46] source

      The Alzheimer's disease section discusses astrocytic clearance of amyloid-β, and the References list an astrocyte–apolipoprotein E association in plaques. Neither addresses whether astrocytes convert secreted ApoE into HDL-like lipoprotein particles (searched: ApoE, HDL-like LNPs, lipoprotein and cholesterol). (LLM, conf=0.76)

      Experimental — accuracy not yet measured
    • cites [47] source
    • Rests on an assumption: ApoE is the major lipid carrier in the brain.
  • May combine two claims.

    Premisecitation

    ATP-binding cassette (ABC) subfamily A1 (ABCA1) catalyzes the rate-limiting step in apolipoprotein-derived LNP formation, and it is the first extracellular partner of secreted ApoE.

    “ATP-binding cassette (ABC) subfamily A1 (ABCA1) catalyzes the rate-limiting step in apolipoprotein-derived LNP formation, and it is the first extracellular partner of secreted ApoE.39”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [39] source

      The Abstract and Discussion (page not available in our copy) show that ABCA1 is important for normal lipidation of astrocyte-secreted apoE-containing lipoproteins. They do not establish that ABCA1 catalyzes a rate-limiting step in lipoprotein nanoparticle formation or that it is the first extracellular partner of secreted apoE. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim.

    Premisecitation

    Biosynthesis of ApoB LNPs requires the activity of the microsomal triglyceride transfer protein (MTTP).

    “Biosynthesis of ApoB LNPs requires the activity of the microsomal triglyceride transfer protein (MTTP). 41”
    Quote in the paperSubstantial claim1 of 1 sources checked
  • May combine two claims.

    Premisecitation

    These LNPs undergo receptor-mediated endocytosis in neurons and glia cells where their lipid constituents are disassembled in lysosomes to supply these constituents to recipient cells.

    “In turn, these LNPs undergo receptor-mediated endocytosis in neurons and glia cells where their lipid constituents are disassembled in lysosomes to supply these constituents to the recipient cells.22, 44–47”
    Quote in the paperSubstantial claim2 of 5 sources checked
    • cites [22] source
    • cites [44] source
    • cites [45] source

      The Cholesterol Homeostasis section describes receptor-mediated uptake of apoE-containing lipoproteins by neurons, followed by processing of their cholesterol in lysosomes for delivery to membranes. The LDL receptor family section describes uptake receptors in both neurons and glia. The paper does not establish that all lipid constituents of these particles are disassembled in lysosomes, or explicitly describe that full sequence in glial cells. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
    • cites [46] source

      The ‘Supply of energy substrates’ section describes astrocyte-to-neuron transfer of lactate and the possible production of ketone bodies, not uptake of lipid nanoparticles. Searches for LNPs, receptor-mediated endocytosis, and lysosomal lipid breakdown found no passage addressing the claimed process. (LLM, conf=0.76)

      Experimental — accuracy not yet measured
    • cites [47] source
  • May combine two claims.

    Findingown data

    When the APOE gene is overexpressed in mammalian cells, the apoprotein is the dominant secreted product, but an LNP form of ApoE is also observed.

    “Whereas the apoprotein is the dominant secreted product when the APOE gene is overexpressed in mammalian cells, an LNP form of ApoE is also observed.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    ApoE was sialylated.

    “ApoE was sialylated (Supplementary Figure 3), a post-translation modification that has also been observed on brain-derived ApoE as well as recombinant ApoE from 293F cells.34”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    Three peaks containing ApoE3 were obtained from the first heparin enrichment step.

    “Three peaks containing ApoE3 were obtained from the first heparin enrichment step (Figure 1A).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    In CCF-STTG1 culture, the majority of ApoE3 in Peak 2 was modified (presumably via proteolysis) into a 25 kDa polypeptide, while the ApoE associated with Peak 1 remained unmodified.

    “Interestingly, whereas a majority of ApoE3 in Peak 2 from the CCF-STTG1 culture was modified (presumably via proteolysis) into a polypeptide with an apparent molecular weight of 25 kDa, the ApoE associated with Peak 1 remained unmodified (Figure 2).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingnone given

    All other variants, save for the truncated W210* variant, eluted with identical retention times as ApoE3.

    “All other variants, save for the truncated W210* variant, eluted with identical retention times as ApoE3.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Findingnone given

    Other cell lines synthesize the same secreted product.

    “Other cell lines were subsequently shown to synthesize the same secreted product.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    In untransfected Expi293F culture, no A280 signal was detected in the SEC fraction corresponding to Peak 2, but a peak of ~40% intensity as that obtained from ApoE3-transfected cells was observed in the fraction corresponding to Peak 1.

    “Whereas no A280 signal was detected in the SEC fraction corresponding to Peak 2 of the untransfected culture, a peak of ~40% intensity as that obtained from ApoE3-transfected cells was observed in the fraction corresponding to Peak 1 (Supplementary Figure 4A).”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Findingown data

    On average (N=3) 67 ± 10 μg of purified ApoE3 was obtained per mL of culture, 12 ± 1 μg of which eluted in Peak 1 and 56 ± 10 μg in Peak 2.

    “On average (N=3) 67 ± 10 μg of purified ApoE3 was obtained per mL of culture 12 ± 1 μg of which eluted in Peak 1 and 56 ± 10 μg in Peak 2.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    On the first day post-transfection, most of the exported ApoE3 appeared as Peak 2, with the relative abundance of Peak 1 increasing over the next 48 h.

    “On the first day post-transfection, most of the exported ApoE3 appeared as Peak 2 with the relative abundance of Peak 1 increasing over the next 48 h (Figure 4).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    ApoE4 protein yield was 30 ± 8 μg per mL of culture, with 9.6 ± 2.4 μg associated with Peak 1 and 21 ± 6 μg with Peak 2.

    “A total of 30 ± 8 μg ApoE4 was recovered per mL of culture, 9.6 ± 2.4 μg of which was associated with Peak 1 and 21 ± 6 μg with Peak 2.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    ApoE4 R251G protein yield was 52 ± 13 μg per mL of culture, with 7.9 ± 1.2 μg associated with Peak 1 and 44 ± 12 μg with Peak 2.

    “For ApoE4 R251G, the total yield was 52 ± 13 μg per mL of culture, 7.9 ± 1.2 μg of which was associated with Peak 1 and 44 ± 12 μg with Peak 2.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    The Peak 1 protein yield was highest in the case of ApoE4.

    “The Peak 1 protein yield was highest in the case of ApoE4 (Figure 8C).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    ApoE2 protein yield was 42 ± 14 μg per mL of culture, with 9.0 ± 3.1 μg associated with Peak 1 and 33 ± 11 μg with Peak 2.

    “A total of 42 ± 14 μg ApoE2 was recovered per mL of culture, 9.0 ± 3.1 μg of which was associated with Peak 1 and 33 ± 11 μg with Peak 2.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Minimal amounts of BODIPY-cholesterol were found in the media of cells treated with Peak 2, while the LNP form (Peak 1) promoted efflux of substantial amounts of BODIPY-cholesterol in a time-dependent manner.

    “While minimal amounts of BODIPY-cholesterol were found in the media of cells treated with Peak 2, the LNP form (Peak 1) promoted efflux of substantial amounts of BODIPY-cholesterol in a time-dependent manner (Figure 7A,B).”
    • Also stated in: § DISCUSSION · hedged
      “our data showing that freshly exported ApoE LNPs are considerably better substrates of ATP-dependent lipid pumps than the apoprotein”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    Bacterial ApoE is expressed as inclusion bodies that must be denatured, refolded, and optionally converted into LNPs using non-physiological procedures.

    “Bacterial ApoE is expressed as inclusion bodies that must be denatured, refolded, and optionally converted into LNPs using non-physiological procedures, resulting in holoprotein that is different from its brain-derived counterpart with respect to key physical (e.g., lipid composition) and/or chemical (e.g., post-translational modifications) properties.21”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [21] source
  • May combine two claims.

    Interpretationown data

    Our findings make a compelling case for the physiological and possibly even pathophysiological role of secreted ApoE LNPs.

    “Our findings make a compelling case for the physiological and possibly even pathophysiological role of secreted ApoE LNPs.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    Each lipid peak integration was manually inspected to ensure accurate and consistent quantitation.

    “Each lipid peak integration was manually inspected to ensure accurate and consistent quantitation.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductnone given

    All experiments were performed in triplicates for each batch of purified proteins.

    “all experiments were performed in triplicates for each batch of purified proteins.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductown data

    The presence of the mutation was confirmed by sequencing.

    “The presence of the mutation was confirmed by sequencing (Elim Biopharmaceuticals, Hayward CA).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductcitation

    Proteins were held to a false discovery rate of 1% using the standard reverse-decoy technique.

    “Proteins were held to a false discovery rate of 1% using the standard reverse-decoy technique.32”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [32] source
  • May combine two claims.

    Premisecitation

    ApoE3 W210* is known to be expressed and secreted, and this truncation is believed to impart a partial loss-of-function phenotype as judged by clinical data from carriers of this allele.

    “Although this truncated variant is known to be expressed and secreted, this truncation is believed to impart a partial loss-of-function phenotype as judged by clinical data from carriers of this allele.42”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [42] source
  • May combine two claims.

    Interpretationown data

    LNP biosynthesis appears to be a readily saturable cellular process that can be easily overwhelmed by conditions ideal for protein overexpression.

    “Thus, LNP biosynthesis appears to be a readily saturable cellular process that can be easily overwhelmed by conditions ideal for protein overexpression.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    It is generally believed that astrocytes are the primary biosynthetic loci of ApoE-containing LNPs.

    “It is generally believed that astrocytes are the primary biosynthetic loci of ApoE-containing LNPs, and that one function of these secreted HDL-like particles is to supply lipids to neurons via receptor-mediated endocytosis, as well as to assist in lipid export from glia cells.54”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [54] source
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    One function of these secreted HDL-like particles is to supply lipids to neurons via receptor-mediated endocytosis, as well as to assist in lipid export from glia cells.

    “It is generally believed that astrocytes are the primary biosynthetic loci of ApoE-containing LNPs, and that one function of these secreted HDL-like particles is to supply lipids to neurons via receptor-mediated endocytosis, as well as to assist in lipid export from glia cells.54”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [54] source
  • May combine two claims.

    Interpretationown data

    Recombinant ApoE LNPs are structurally and compositionally most similar to HDL particles in plasma as well as the relatively less well characterized LNPs that have been isolated from the CSF.

    “A variety of physical and chemical methods have been deployed to establish that these recombinant ApoE LNPs are structurally and compositionally most similar to HDL particles in plasma as well as the relatively less well characterized LNPs that have been isolated from the CSF.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The ER is the primary site of lipid synthesis in most cells.

    “the fact that the ER is the primary site of lipid synthesis in most cells,51”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [51] source
41 of 41
  • The authors state this as an assumption.

    Proteolysis with Trypsin/LysC was assumed to be fully specific.

    “Proteolysis with Trypsin/LysC was assumed to be fully specific.”
  • The paper relies on this without support.

    Lomitapide is an FDA-approved drug used to treat hypercholesterolemia based on its ability to inhibit MTTP.

    “Lomitapide is an FDA-approved drug that is used to treat hypercholesterolemia based on its ability to inhibit MTTP.”
  • The paper relies on this without support.

    ApoE3 W210* is the most common truncated ApoE variant found in humans and lacks the C-terminal end that plays a major role in lipid-binding.

    “the most common truncated ApoE variant found in humans that lacks the C-terminal end which plays a major role in lipid-binding.”
  • The paper relies on this without support.

    Overexpression of the APOE gene in mammalian cells yields apo-ApoE as the predominant secreted form of the protein.

    “The widespread observation that overexpression of the APOE gene in mammalian cells yields apo-ApoE as the predominant secreted form of the protein”
  • The paper relies on this without support.

    The dogma is that the glycosylated tetramer is assembled into an LNP through the action of ATP-dependent lipid pumps (e.g., ABCA1, ABCA7).

    “has led to the dogma that the glycosylated tetramer is assembled into an LNP through the action of ATP-dependent lipid pumps (e.g., ABCA1, ABCA7).”
  • The paper relies on this without support.

    Ceramide and its derivatives as well as cholesterol and related sterols are synthesized in the ER.

    “Notably, ceramide and its derivatives as well as cholesterol and related sterols are synthesized in the ER.”
  • The paper relies on this without support.

    ApoE is the most important genetic determinant of late-onset Alzheimer’s Disease.

    “ApoE is the most important genetic determinant of late-onset Alzheimer’s Disease.”
  • The paper relies on this without support.

    ApoE is the major lipid carrier in the brain.

    “ApoE is the major lipid carrier in the brain.”
  • The paper relies on this without support.

    An analogous mechanism has not been interrogated for ApoE, the dominant protein in HDL-like LNPs found in CSF.

    “an analogous mechanism has not been interrogated for ApoE, the dominant protein in HDL-like LNPs found in CSF.”
9 of 9

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The high molecular weight ApoE fraction undergoes more effective receptor-mediated endocytosis than the lipid-poor species.

    “The former particle not only elicits cholesterol efflux at a higher rate from cells with ATP-dependent lipid pump activity but it also undergoes more effective receptor mediated endocytosis.”
  • Secreted ApoE resolves into a high molecular weight, lipid-bound lipoprotein particle (Peak 1) and a lower molecular weight, lipid-poor species (Peak 2).

    “secreted ApoE resolves into a high molecular weight, lipid-bound lipoprotein particle (previously termed Peak 1) and a lower molecular weight, lipid-poor species (previously termed Peak 2) 12 .”
  • The high molecular weight ApoE fraction elicits cholesterol efflux at a higher rate from cells with ATP-dependent lipid pump activity than the lipid-poor species.

    “The former particle not only elicits cholesterol efflux at a higher rate from cells with ATP-dependent lipid pump activity but it also undergoes more effective receptor mediated endocytosis.”

Cites

Flagged first, then by citations

Cited by

Sorted by citations

Authors
Hernandez Arriaza, R., Reil, D., Fatuzzo, N., Fu, M., Dai, Y., Fernandez Martinez, D., Jiang, H., Holtzman, D. M., Greicius, M. D., & Khosla, C.
Affiliations
  • Department of Chemistry
  • Stanford University (US)
  • Stanford SLAC CryoEM Initiative
  • Washington University in St. Louis (US)
Corresponding author
Khosla, Chaitan
Venue
Biochemistry
Published
2025-10-24
Volume
64
Issue
21
Pages
4387-4399
ISSN
  • 0006-2960 (ISSN-L)
  • 1520-4995
OpenAlex
W4415518361
Cited by
2
References
56
Citations by year
2026: 2
FWCI
1.29
Type
journal article
Language
en
Open access
Locations
  • Biochemistry (publishedVersion)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
Funders
  • Wu Tsai Neurosciences Institute, Stanford University
  • National Institute on Aging (P30AG066515, R35AG072290)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Health Sciences › Medicine › Surgery › Cholesterol and Lipid Metabolism
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
Keywords
apolipoprotein E, lipid nanoparticles, apoE secretion, APOE ε4, APOE3, APOE2, C-terminal domain, lipid modification, astrocytoma cells, Alzheimer's disease pathogenesis, cholesterol transport, protein export
MeSH terms
Alzheimer Disease, Animals, Apolipoproteins E, Humans, Liposomes, Cell Line, Tumor, Apolipoprotein E3, Apolipoprotein E4, Nanoparticles

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-31.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-31.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review