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Enhancing Bidirectional Electron Transfer of Shewanella oneidensis by a Synthetic Flavin Pathway

Yang, Yun, Ding, Yuanzhao, Hu, Yidan, Cao, Bin, Rice, Scott A., Kjelleberg, Staffan, Song, Hao·2015·ACS Synthetic Biology

DOI 10.1021/sb500331x

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Abstract

Flavins regulate the rate and direction of extracellular electron transfer (EET) in Shewanella oneidensis. However, low concentration of endogenously secreted flavins by the wild-type S. oneidensis MR-1 limits its EET efficiency in bioelectrochemical systems (BES). Herein, a synthetic flavin biosynthesis pathway from Bacillus subtilis was heterologously expressed in S. oneidensis MR-1, resulting in ∼25.7 times' increase in secreted flavin concentration. This synthetic flavin module enabled enhanced bidirectional EET rate of MR-1, in which its maximum power output in microbial fuel cells increased ∼13.2 times (from 16.4 to 233.0 mW/m(2)), and the inward current increased ∼15.5 times (from 15.5 to 255.3 μA/cm(2)).

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KEGG: Kyoto Encyclopedia of Genes and Genomes
Kanehisa, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.27 · Cited by 37,077
KEGG: Kyoto Encyclopedia of Genes and Genomes
Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232
Exoelectrogenic bacteria that power microbial fuel cells
Logan, B. E. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2113 · Cited by 2,383
Shewanella secretes flavins that mediate extracellular electron transfer
Marsili, E., Baron, D. B., Shikhare, I. D., Coursolle, D., Gralnick, J. A., & Bond, D. R. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0710525105 · Cited by 1,982
Microbial electrosynthesis — revisiting the electrical route for microbial production
Rabaey, K., & Rozendal, R. A. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2422 · Cited by 1,651
JCat: a novel tool to adapt codon usage of a target gene to its potential expression host
Grote, A., Hiller, K., Scheer, M., Munch, R., Nortemann, B., Hempel, D. C., & Jahn, D. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki376 · Cited by 1,580
A field guide to bacterial swarming motility
Kearns, D. B. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2405 · Cited by 1,483
Bug juice: harvesting electricity with microorganisms
Lovley, D. R. (2006) · Nature Reviews Microbiology · doi:10.1038/nrmicro1442 · Cited by 1,396
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Caspi, R., Altman, T., Billington, R., Dreher, K., Foerster, H., Fulcher, C. A., Holland, T. A., Keseler, I. M., Kothari, A., Kubo, A., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1103 · Cited by 1,204
Microbial Electrosynthesis: Feeding Microbes Electricity To Convert Carbon Dioxide and Water to Multicarbon Extracellular Organic Compounds
Nevin, K. P., Woodard, T. L., Franks, A. E., Summers, Z. M., & Lovley, D. R. (2010) · mBio · doi:10.1128/mbio.00103-10 · Cited by 1,066
Secretion of Flavins by Shewanella Species and Their Role in Extracellular Electron Transfer
von Canstein, H., Ogawa, J., Shimizu, S., & Lloyd, J. R. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.01387-07 · Cited by 890
Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1
El-Naggar, M. Y., Wanger, G., Leung, K. M., Yuzvinsky, T. D., Southam, G., Yang, J., Lau, W. M., Nealson, K. H., & Gorby, Y. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1004880107 · Cited by 641
A kinetic perspective on extracellular electron transfer by anode-respiring bacteria
Torres, C. I., Marcus, A. K., Lee, H.-S., Parameswaran, P., Krajmalnik-Brown, R., & Rittmann, B. E. (2010) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2009.00191.x · Cited by 614
Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants
Bretschger, O., Obraztsova, A., Sturm, C. A., Chang, I. S., Gorby, Y. A., Reed, S. B., Culley, D. E., Reardon, C. L., Barua, S., Romine, M. F., et al. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01087-07 · Cited by 574
Rate enhancement of bacterial extracellular electron transport involves bound flavin semiquinones
Okamoto, A., Hashimoto, K., Nealson, K. H., & Nakamura, R. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1220823110 · Cited by 539
Genetic identification of a respiratory arsenate reductase
Saltikov, C. W., & Newman, D. K. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1834303100 · Cited by 499
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Kotloski, N. J., & Gralnick, J. A. (2013) · mBio · doi:10.1128/mbio.00553-12 · Cited by 484
The Mtr Respiratory Pathway Is Essential for Reducing Flavins and Electrodes in Shewanella oneidensis
Coursolle, D., Baron, D. B., Bond, D. R., & Gralnick, J. A. (2010) · Journal of Bacteriology · doi:10.1128/jb.00925-09 · Cited by 472
Techniques for the study and development of microbial fuel cells: an electrochemical perspective
Zhao, F., Slade, R. C. T., & Varcoe, J. R. (2009) · Chemical Society Reviews · doi:10.1039/b819866g · Cited by 469
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Franks, A. E., & Nevin, K. P. (2010) · Energies · doi:10.3390/en3050899 · Cited by 443
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Ross, D. E., Flynn, J. M., Baron, D. B., Gralnick, J. A., & Bond, D. R. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016649 · Cited by 366
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Lovley, D. R., & Nevin, K. P. (2013) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2013.02.012 · Cited by 343
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Lies, D. P., Hernandez, M. E., Kappler, A., Mielke, R. E., Gralnick, J. A., & Newman, D. K. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.8.4414-4426.2005 · Cited by 335
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Ellis, T., Adie, T., & Baldwin, G. S. (2011) · Integrative Biology · doi:10.1039/c0ib00070a · Cited by 305
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Authors: Yang, Y., Ding, Y., Hu, Y., Cao, B., Rice, S. A., Kjelleberg, S., & Song, H.
Venue: ACS Synthetic Biology
Publisher: American Chemical Society (ACS)
Published: 2015-02-05
Volume: 4
Issue: 7
Pages: 815-823
ISSN: 2161-5063 (ISSN-L)
DOI: 10.1021/sb500331x
OpenAlex: W2008209828
Cited by: 290
References: 59
FWCI: 14.12
Type: journal article
Language: en
Open access: closed

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Enhancing Bidirectional Electron Transfer of Shewanella oneidensis by a Synthetic Flavin Pathway

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