Parallel adaptive radiations in two major clades of placental mammals
Abstract
Higher level relationships among placental mammals, as well as the historical biogeography and morphological diversification of this group, remain unclear. Here we analyse independent molecular data sets, having aligned lengths of DNA of 5,708 and 2,947 base pairs, respectively, for all orders of placental mammals. Phylogenetic analyses resolve placental orders into four groups: Xenarthra, Afrotheria, Laurasiatheria, and Euarchonta plus Glires. The first three groups are consistently monophyletic with different methods of analysis. Euarchonta plus Glires is monophyletic or paraphyletic depending on the phylogenetic method. A unique nine-base-pair deletion in exon 11 of the BRCA1 gene provides additional support for the monophyly of Afrotheria, which includes proboscideans, sirenians, hyracoids, tubulidentates, macroscelideans, chrysochlorids and tenrecids. Laurasiatheria contains cetartiodactyls, perissodactyls, carnivores, pangolins, bats and eulipotyphlan insectivores. Parallel adaptive radiations have occurred within Laurasiatheria and Afrotheria. In each group, there are aquatic, ungulate and insectivore-like forms.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Molecular dates for the origins of animal phyla and orders of mammals and birds are generally twice as old as the dates of origin indicated by the fossil record.
“But molecular dates for the origins of animal phyla 27 and orders of mammals and birds 68 are generally twice as old as the dates of origin indicated by the fossil record.”
From The modern molecular clock (2003) · cites this paper as [68]
Cites
Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617 · see citing works
Classification of mammals: above the species level
(1998) · Choice Reviews Online · doi:10.5860/choice.35-5657 · Cited by 2,118 · see citing works
A molecular timescale for vertebrate evolution
Kumar, S., & Hedges, S. B. (1998) · Nature · doi:10.1038/31927 · Cited by 1,936 · see citing works
Rambaut, A., & Grass, N. C. (1997) · Computer applications in the biosciences · doi:10.1093/bioinformatics/13.3.235 · Cited by 1,581 · see citing works
Molecular Systematics: 1994–1995
Sytsma, K. J., & Hahn, W. J. (1997) · Springer eBooks · doi:10.1007/978-3-642-60458-4_21 · Cited by 1,174 · see citing works
Mammalian phytogeny: shaking the tree
Novacek, M. J. (1992) · Nature · doi:10.1038/356121a0 · Cited by 641 · see citing works
Stanhope, M. J., Waddell, V. G., Madsen, O., JONG, W. W. D., Hedges, S. B., Cleven, G. C., Kao, D. J., & Springer, M. S. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.17.9967 · Cited by 386 · see citing works
Self-citationTowards resolving the interordinal relationships of placental mammals.
Waddell, P., Okada, N., & Hasegawa, M. (1999) · Systematic Biology · doi:10.1093/sysbio/48.1.1 · Cited by 335 · see citing works
Endemic African mammals shake the phylogenetic tree
Springer, M. S., Cleven, G. C., Madsen, O., JONG, W. W. D., Waddell, V. G., Amrine‐Madsen, H., & Stanhope, M. J. (1997) · Nature · doi:10.1038/40386 · Cited by 329 · see citing works
Self-citationFoote, M., Hunter, J. P., Janis, C. M., & Sepkoski, J. J. (1999) · Science · doi:10.1126/science.283.5406.1310 · Cited by 307 · see citing works
Molecular evidence regarding the origin of echolocation and flight in bats
Teeling, E. C., Scally, M., Kao, D. J., Romagnoli, M. L., Springer, M. S., & Stanhope, M. J. (2000) · Nature · doi:10.1038/35003188 · Cited by 304 · see citing works
Self-citationEstimating divergence dates from molecular sequences.
Rambaut, A., & Bromham, L. (1998) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025940 · Cited by 298 · see citing works
The Evolution of perissodactyls
(1990) · Choice Reviews Online · doi:10.5860/choice.27-5770 · Cited by 275 · see citing works
Shoshani, J., & McKenna, M. C. (1998) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1998.0520 · Cited by 220 · see citing works
Waddell, P. J., Cao, Y., Hauf, J., & Hasegawa, M. (1999) · Systematic Biology · doi:10.1080/106351599260427 · Cited by 171 · see citing works
Luckett, W. P., & Hartenberger, J. (1993) · Journal of Mammalian Evolution · doi:10.1007/bf01041591 · Cited by 138 · see citing works
A Tribosphenic Mammal from the Mesozoic of Australia
Rich, T. H., Vickers-Rich, P., Constantine, A., Flannery, T. F., Kool, L., & van Klaveren, N. (1997) · Science · doi:10.1126/science.278.5342.1438 · Cited by 133 · see citing works
Mouchaty, S. K., Gullberg, A., Janke, A., & Árnason, Ú. (2000) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026238 · Cited by 119 · see citing works
Novacek, M. J. (1986) · Biodiversity Heritage Library (Smithsonian Institution) · Cited by 105 · see citing works
Winsor, M. P., & Rainger, R. (1993) · The American Historical Review · doi:10.2307/2166789 · Cited by 98 · see citing works
Springer, M. S., Burk, A., Kavanagh, J. R., Waddell, V. G., & Stanhope, M. J. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.25.13754 · Cited by 93 · see citing works
Self-citationPenny, D., Hasegawa, M., Waddell, P. J., & Hendy, M. D. (1999) · Systematic Biology · doi:10.1080/106351599260454 · Cited by 87 · see citing works
A Morphological Basis for Assessing the Phylogeny of the “Tenrecoidea” (Mammalia, Lipotyphla)
Asher, R. J. (1999) · Cladistics · doi:10.1006/clad.1999.0108 · Cited by 82 · see citing works
A Morphological Basis for Assessing the Phylogeny of the “Tenrecoidea” (Mammalia, Lipotyphla)
Asher, R. J. (1999) · Cladistics · doi:10.1111/j.1096-0031.1999.tb00266.x · Cited by 78 · see citing works
Molecules remodel the mammalian tree
JONG, W. W. D. (1998) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(98)01335-4 · Cited by 72 · see citing works
Krajewski, C., Blacket, M. J., Buckley, L., et al. (1997) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1997.0421 · Cited by 65 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Initial sequencing and comparative analysis of the mouse genome
Mouse Genome Sequencing Consortium (2002) · Nature · doi:10.1038/nature01262 · Cited by 7,187 · see citing works
An approximately unbiased test of phylogenetic tree selection
Shimodaira, H. (2002) · Systematic Biology · doi:10.1080/10635150290069913 · Cited by 2,791 · see citing works
Distribution and intensity of constraint in mammalian genomic sequence
Cooper, G. M., Stone, E. A., Asimenos, G., Green, E. D., Batzoglou, S., & Sidow, A. (2005) · Genome Research · doi:10.1101/gr.3577405 · Cited by 1,359 · see citing works
A review of long-branch attraction
Bergsten, J. (2005) · Cladistics · doi:10.1111/j.1096-0031.2005.00059.x · Cited by 1,162 · see citing works
How many species of mammals are there?
Burgin, C. J., Colella, J. P., Kahn, P. L., & Upham, N. S. (2018) · Journal of Mammalogy · doi:10.1093/jmammal/gyx147 · Cited by 1,127 · see citing works
Paleontological Evidence to Date the Tree of Life
Benton, M. J., & Donoghue, P. C. J. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl150 · Cited by 916 · see citing works
Bromham, L., & Penny, D. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1020 · Cited by 615 · see citing works
Impact of missing data on phylogenies inferred from empirical phylogenomic data sets
Roure, B., Baurain, D., & Philippe, H. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mss208 · Cited by 365 · see citing works
Philippe, H., Delsuc, F., Brinkmann, H., & Lartillot, N. (2005) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev.ecolsys.35.112202.130205 · Cited by 306 · see citing works
Comparison of the genomes of human and mouse lays the foundation of genome zoology
Emes, R. D. (2003) · Human Molecular Genetics · doi:10.1093/hmg/ddg078 · Cited by 220 · see citing works
Dating the Time of Origin of Major Clades: Molecular Clocks and the Fossil Record
Smith, A. B., & Peterson, K. J. (2002) · Annual Review of Earth and Planetary Sciences · doi:10.1146/annurev.earth.30.091201.140057 · Cited by 193 · see citing works
Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution.
Hasegawa, M., Thorne, J. L., & Kishino, H. (2003) · Genes & Genetic Systems · doi:10.1266/ggs.78.267 · Cited by 145 · see citing works
Heterogeneous Models Place the Root of the Placental Mammal Phylogeny
Morgan, C. C., Foster, P. G., Webb, A. E., Pisani, D., McInerney, J. O., & O’Connell, M. J. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst117 · Cited by 123 · see citing works
Ancient Biomolecules and Evolutionary Inference
Cappellini, E., Prohaska, A., Racimo, F., Welker, F., Pedersen, M. W., Allentoft, M. E., de Barros Damgaard, P., Gutenbrunner, P., Dunne, J., Hammann, S., et al. (2018) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-062917-012002 · Cited by 118 · see citing works
Poux, C., & Douzery, E. J. P. (2004) · American Journal of Physical Anthropology · doi:10.1002/ajpa.10322 · Cited by 103 · see citing works
Douzery, E. J. P., Delsuc, F., Stanhope, M. J., & Huchon, D. (2003) · Journal of Molecular Evolution · doi:10.1007/s00239-003-0028-x · Cited by 102 · see citing works
Self-citationPETERSON, K. J., SUMMONS, R. E., & DONOGHUE, P. C. J. (2007) · Palaeontology · doi:10.1111/j.1475-4983.2007.00692.x · Cited by 93 · see citing works
Roure, B., & Philippe, H. (2011) · BMC Evolutionary Biology · doi:10.1186/1471-2148-11-17 · Cited by 64 · see citing works
Jensen, B. A., & Hahn, M. E. (2001) · Toxicological Sciences · doi:10.1093/toxsci/64.1.41 · Cited by 44 · see citing works
Molecular Clocks and Explosive Radiations
Bromham, L. (2003) · Journal of Molecular Evolution · doi:10.1007/s00239-003-0002-7 · Cited by 40 · see citing works
Kim, E.-Y., & Hahn, M. E. (2002) · Aquatic Toxicology · doi:10.1016/s0166-445x(01)00221-1 · Cited by 22 · see citing works
- Authors
- Madsen, O., Scally, M., Douady, C. J., Kao, D. J., DeBry, R. W., Adkins, R., Amrine, H. M., Stanhope, M. J., de Jong, W. W., & Springer, M. S.
- Affiliations
- Radboud University Nijmegen (NL)
- University of California, Riverside (US)
- University of Cincinnati (US)
- University of Massachusetts Amherst (US)
- Queen's University Belfast (GB)
- Corresponding author
- Springer, Mark S.
- Venue
- Nature
- Published
- 2001-02
- Volume
- 409
- Issue
- 6820
- Pages
- 610-614
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2097412226
- Cited by
- 653
- References
- 27
- Citations by year
- 2026: 6 · 2025: 7 · 2024: 5 · 2023: 8 · 2022: 8 · 2021: 7 · 2020: 13 · 2019: 15 · 2018: 5 · 2017: 17 · 2016: 20 · 2015: 13 · 2014: 20 · 2013: 23 · 2012: 24
- FWCI
- 72.64
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- UvA-DARE (University of Amsterdam) (publishedVersion)
- HAL (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Radboud Repository (Radboud University) (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Plant Diversity and Evolution
- Keywords
- placental mammals, mammalian phylogeny, Afrotheria, Laurasiatheria, Xenarthra, monophyly, historical biogeography, morphological diversification, cetartiodactyls, Proboscidea, sirenians, insectivores, bats, pangolins
- MeSH terms
- Animals, DNA, Biological Evolution, Humans, Mammals, Phylogeny, Sequence Alignment
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review