Structure of influenza haemagglutinin at the pH of membrane fusion
Abstract
Low pH induces a conformational change in the influenza virus haemagglutinin, which then mediates fusion of the viral and host cell membranes. The three-dimensional structure of a fragment of the haemagglutinin in this conformation reveals a major refolding of the secondary and tertiary structure of the molecule. The apolar fusion peptide moves at least 100 A to one tip of the molecule. At the other end a helical segment unfolds, a subdomain relocates reversing the chain direction, and part of the structure becomes disordered.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The HA stem region is highly conserved across all influenza A subtypes, and targeting this region can block the low-pH-induced conformational rearrangements associated with membrane fusion, which is essential for virus infection.
“The HA stem region is an attractive therapeutic epitope as it is highly conserved across all influenza A subtypes, and targeting this region can block the low-pH-induced conformational rearrangements associated with membrane fusion, which is essential for virus infection32,33.”
From Design of protein-binding proteins from the target structure alone (2022) · cites this paper as [32]
Cites
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
Kraulis, P. J. (1991) · Journal of Applied Crystallography · doi:10.1107/s0021889891004399 · Cited by 14,157 · see citing works
Jones, T. A., Zou, J.-Y., Cowan, S. W., & Kjeldgaard, M. (1991) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767390010224 · Cited by 12,650 · see citing works
Verification of protein structures: Patterns of nonbonded atomic interactions
Colovos, C., & Yeates, T. O. (1993) · Protein Science · doi:10.1002/pro.5560020916 · Cited by 4,506 · see citing works
Free R value: a novel statistical quantity for assessing the accuracy of crystal structures
Brünger, A. T. (1992) · Nature · doi:10.1038/355472a0 · Cited by 3,877 · see citing works
Assessment of protein models with three-dimensional profiles
Lüthy, R., Bowie, J., & Eisenberg, D. (1992) · Nature · doi:10.1038/356083a0 · Cited by 3,588 · see citing works
X-PLOR Version 3.1: A System for X-ray Crystallography and NMR
Brünger, A. T. (1992) · Medical Entomology and Zoology · Cited by 3,439 · see citing works
Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 Å resolution
Wilson, I. A., Skehel, J. J., & Wiley, D. C. (1981) · Nature · doi:10.1038/289366a0 · Cited by 2,535 · see citing works
Self-citationSöllner, T. H., Bennett, M., Whiteheart, S., Scheller, R., & Rothman, J. (1993) · Cell · doi:10.1016/0092-8674(93)90376-2 · Cited by 1,922 · see citing works
Improved Fourier coefficients for maps using phases from partial structures with errors
Read, R. J. (1986) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767386099622 · Cited by 1,885 · see citing works
The packing of α-helices: simple coiled-coils
Crick, F. H. C. (1953) · Acta Crystallographica · doi:10.1107/s0365110x53001964 · Cited by 1,578 · see citing works
THE STRUCTURE AND FUNCTION OF THE HEMAGGLUTININ MEMBRANE GLYCOPROTEIN OF INFLUENZA VIRUS
Wiley, D. C., & Skehel, J. J. (1987) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.56.070187.002053 · Cited by 1,413 · see citing works
Self-citationA spring-loaded mechanism for the conformational change of influenza hemagglutinin
Carr, C. M., & Kim, P. S. (1993) · Cell · doi:10.1016/0092-8674(93)90260-w · Cited by 857 · see citing works
Skehel, J. J., Bayley, P. M., Brown, E. B., Martin, S. R., Waterfield, M. D., White, J. M., Wilson, I. A., & Wiley, D. C. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.4.968 · Cited by 726 · see citing works
Self-citationCell fusion by Semliki Forest, influenza, and vesicular stomatitis viruses.
White, J., Matlin, K. S., & Helenius, A. (1981) · The Journal of Cell Biology · doi:10.1083/jcb.89.3.674 · Cited by 561 · see citing works
Ribbon models of macromolecules
Carson, M. (1987) · Journal of Molecular Graphics · doi:10.1016/0263-7855(87)80010-3 · Cited by 518 · see citing works
Lipid-anchored influenza hemagglutinin promotes hemifusion, not complete fusion
Kemble, G. W., Danieli, T., & White, J. M. (1994) · Cell · doi:10.1016/0092-8674(94)90344-1 · Cited by 488 · see citing works
Fusion mutants of the influenza virus hemagglutinin glycoprotein
Daniels, R. S. (1985) · Cell · doi:10.1016/0092-8674(85)90157-6 · Cited by 404 · see citing works
Methods and programs for direct-space exploitation of geometric redundancies
Bricogne, G. (1976) · Acta Crystallographica Section A · doi:10.1107/s0567739476001691 · Cited by 379 · see citing works
Sauter, N. K., Hanson, J. E., Glick, G. D., Brown, J. H., Crowther, R. L., Park, S. J., Skehel, J. J., & Wiley, D. C. (1992) · Biochemistry · doi:10.1021/bi00155a013 · Cited by 343 · see citing works
Self-citationGething, M. J., Doms, R. W., York, D., et al. (1986) · The Journal of Cell Biology · doi:10.1083/jcb.102.1.11 · Cited by 343 · see citing works
Doms, R. W., Helenius, A., & White, J. (1985) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)89461-3 · Cited by 340 · see citing works
Crystalline Antigen from the Influenza Virus Envelope
BRAND, C. M., & Skehel, J. J. (1972) · Nature New Biology · doi:10.1038/newbio238145a0 · Cited by 336 · see citing works
Self-citationPeriodic features in the amino acid sequence of nematode myosin rod
McLachlan, A. D., & Karn, J. (1983) · Journal of Molecular Biology · doi:10.1016/0022-2836(83)90053-0 · Cited by 304 · see citing works
Mittal, A., & Bentz, J. (2004) · CRC Press eBooks · doi:10.1201/9781420040203.ch16 · Cited by 301 · see citing works
Influenza viruses cause hemolysis and fusion of cells
Huang, R. T. C., ROTT, R., & Klenk, H. (1981) · Virology · doi:10.1016/0042-6822(81)90030-1 · Cited by 281 · see citing works
White, J. M., & Wilson, I. A. (1987) · The Journal of Cell Biology · doi:10.1083/jcb.105.6.2887 · Cited by 281 · see citing works
Studies on the primary structure of the influenza virus hemagglutinin.
Skehel, J. J., & Waterfield, M. D. (1975) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.72.1.93 · Cited by 265 · see citing works
Self-citationActivation of influenza virus by acidic media causes hemolysis and fusion of erythrocytes
Maeda, T., & Ohnishi, S. (1980) · FEBS Letters · doi:10.1016/0014-5793(80)80457-1 · Cited by 249 · see citing works
Refinement of the influenza virus hemagglutinin by simulated annealing
Weis, W. I., Brünger, A. T., Skehel, J. J., & Wiley, D. C. (1990) · Journal of Molecular Biology · doi:10.1016/0022-2836(90)90234-d · Cited by 198 · see citing works
Self-citationDaniels, P. S., Jeffries, S., Yates, P., et al. (1987) · The EMBO Journal · doi:10.1002/j.1460-2075.1987.tb02387.x · Cited by 183 · see citing works
Jones, I. M. (1993) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(93)90074-w · Cited by 178 · see citing works
Godley, L. A., Pfeifer, J. B., Steinhauer, D. A., Ely, B. K., Shaw, G., Kaufmann, R., Suchanek, E. G., Pabo, C. O., Skehel, J. J., Wiley, D. C., et al. (1992) · Cell · doi:10.1016/0092-8674(92)90140-8 · Cited by 175 · see citing works
Self-citationEllens, H. M., Bentz, J., Mason, D., Zhang, F., & White, J. M. (1990) · Biochemistry · doi:10.1021/bi00493a027 · Cited by 170 · see citing works
Terwilliger, T. C., & Eisenberg, D. (1983) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767383001592 · Cited by 169 · see citing works
Ruigrok, R. W. H., Martin, S. R., Wharton, S. A., et al. (1986) · Virology · doi:10.1016/0042-6822(86)90210-2 · Cited by 161 · see citing works
Studies on the Structure of the Influenza Virus Haemagglutinin at the pH of Membrane Fusion
Ruigrok, R. W. H., Aitken, A., Calder, L. J., Martin, S. R., Skehel, J. J., Wharton, S. A., Weis, W. I., & Wiley, D. C. (1988) · Journal of General Virology · doi:10.1099/0022-1317-69-11-2785 · Cited by 154 · see citing works
Self-citationPatch clamp studies of single cell-fusion events mediated by a viral fusion protein
Spruce, A. E., Iwata, A., White, J. M., et al. (1989) · Nature · doi:10.1038/342555a0 · Cited by 149 · see citing works
Graves, P. N., Schulman, J. L., Young, J. F., et al. (1983) · Virology · doi:10.1016/0042-6822(83)90465-8 · Cited by 141 · see citing works
On the Origin of Pandemic Influenza Viruses
Webster, R. G. (1972) · Modern aspects of electrochemistry · doi:10.1007/978-3-642-65444-2_3 · Cited by 139 · see citing works
Electron microscopy of the low pH structure of influenza virus haemagglutinin.
Ruigrok, R. W. H., Wrigley, N. G., Calder, L. J., Cusack, S., Wharton, S. A., Brown, E. B., & Skehel, J. J. (1986) · The EMBO Journal · doi:10.1002/j.1460-2075.1986.tb04175.x · Cited by 136 · see citing works
Self-citationBlum, M., Metcalf, P., Harrison, S. C., et al. (1987) · Journal of Applied Crystallography · doi:10.1107/s0021889887086783 · Cited by 128 · see citing works
Yewdell, J. W., Gerhard, W., & Bächi, T. (1983) · Journal of Virology · doi:10.1128/jvi.48.1.239-248.1983 · Cited by 103 · see citing works
Changes in the antigenicity of the hemagglutinin moleculeof H3 influenza virus at acidic pH
Webster, R. G., Brown, L. E., & Jackson, D. C. (1983) · Virology · doi:10.1016/s0042-6822(83)80015-4 · Cited by 98 · see citing works
Metcalf, P., Blum, M. L., Freymann, D. M., et al. (1987) · Nature · doi:10.1038/325084a0 · Cited by 70 · see citing works
Wharton, S. A., Ruigrok, R. W. H., Martin, S. R., Skehel, J. J., Bayley, P. M., Weis, W. I., & Wiley, D. C. (1988) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)68950-1 · Cited by 53 · see citing works
Self-citationWard, C. W., & Dopheide, T. A. A. (1980) · Australian Journal of Biological Sciences · doi:10.1071/bi9800441 · Cited by 38 · see citing works
Crystals of a gragment of influenza haemagglutinin in the low pH induced conformation
Bullough, P. A., Hughson, F. M., Treharne, A., Ruigrok, R. W. H., Skehel, J. J., & Wiley, D. C. (1994) · Journal of Molecular Biology · doi:10.1016/0022-2836(94)90027-2 · Cited by 35 · see citing works
Self-citationThe origin of pandemic influenza viruses.
Skehel, J. J. (1974) · Cited by 29 · see citing works
Self-citationGoldsmith, E. J., & Mottonen, J. M. (1994) · Structure · doi:10.1016/s0969-2126(00)00025-3 · Cited by 18 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Antibody Recognition of a Highly Conserved Influenza Virus Epitope
Ekiert, D. C., Bhabha, G., Elsliger, M.-A., Friesen, R. H. E., Jongeneelen, M., Throsby, M., Goudsmit, J., & Wilson, I. A. (2009) · Science · doi:10.1126/science.1171491 · Cited by 1,326 · see citing works
Corti, D., Voss, J., Gamblin, S. J., Codoni, G., Macagno, A., Jarrossay, D., Vachieri, S. G., Pinna, D., Minola, A., Vanzetta, F., et al. (2011) · Science · doi:10.1126/science.1205669 · Cited by 1,203 · see citing works
Self-citationStructures and mechanisms of viral membrane fusion proteins: multiple variations on a common theme
White, J. M., Delos, S. E., Brecher, M., & Schornberg, K. (2008) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409230802058320 · Cited by 892 · see citing works
Pre-fusion structure of a human coronavirus spike protein
Kirchdoerfer, R. N., Cottrell, C. A., Wang, N., Pallesen, J., Yassine, H. M., Turner, H. L., Corbett, K. S., Graham, B. S., McLellan, J. S., & Ward, A. B. (2016) · Nature · doi:10.1038/nature17200 · Cited by 765 · see citing works
Role of hemagglutinin cleavage for the pathogenicity of influenza virus.
Steinhauer, D. A. (1999) · Virology · doi:10.1006/viro.1999.9716 · Cited by 663 · see citing works
Design of protein-binding proteins from the target structure alone
Cao, L., Coventry, B., Goreshnik, I., Huang, B., Sheffler, W., Park, J. S., Jude, K. M., Marković, I., Kadam, R. U., Verschueren, K. H. G., et al. (2022) · Nature · doi:10.1038/s41586-022-04654-9 · Cited by 577 · see citing works
The Design of Coiled-Coil Structures and Assemblies
Woolfson, D. N. (2005) · Advances in Protein Chemistry · doi:10.1016/s0065-3233(05)70004-8 · Cited by 585 · see citing works
Li, W. (2004) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2003.10.041 · Cited by 588 · see citing works
DC-SIGN-mediated internalization of HIV is required for trans-enhancement of T cell infection
Kwon, D. S., Gregorio, G., Bitton, N., Hendrickson, W. A., & Littman, D. R. (2002) · Immunity · doi:10.1016/s1074-7613(02)00259-5 · Cited by 523 · see citing works
Kirchdoerfer, R. N., Wang, N., Pallesen, J., Wrapp, D., Turner, H. L., Cottrell, C. A., Corbett, K. S., Graham, B. S., McLellan, J. S., & Ward, A. B. (2018) · Scientific Reports · doi:10.1038/s41598-018-34171-7 · Cited by 466 · see citing works
Polycation gene delivery systems: escape from endosomes to cytosol
Cho, Y. W., Kim, J.-D., & Park, K. (2003) · Journal of Pharmacy and Pharmacology · doi:10.1211/002235703765951311 · Cited by 370 · see citing works
Ferreiro, D. U., Komives, E. A., & Wolynes, P. G. (2014) · Quarterly Reviews of Biophysics · doi:10.1017/s0033583514000092 · Cited by 314 · see citing works
The Mad2 spindle checkpoint protein has two distinct natively folded states
Luo, X., Tang, Z., Xia, G., Wassmann, K., Matsumoto, T., Rizo, J., & Yu, H. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb748 · Cited by 297 · see citing works
Chen, E. H., Grote, E., Mohler, W., & Vignery, A. (2007) · FEBS Letters · doi:10.1016/j.febslet.2007.03.033 · Cited by 263 · see citing works
Controlling Allosteric Networks in Proteins
Dokholyan, N. V. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00544 · Cited by 260 · see citing works
Potent peptidic fusion inhibitors of influenza virus
Kadam, R. U., Juraszek, J., Brandenburg, B., Buyck, C., Schepens, W. B. G., Kesteleyn, B., Stoops, B., Vreeken, R. J., Vermond, J., Goutier, W., et al. (2017) · Science · doi:10.1126/science.aan0516 · Cited by 165 · see citing works
Structural transitions in influenza haemagglutinin at membrane fusion pH
Benton, D. J., Gamblin, S. J., Rosenthal, P. B., & Skehel, J. J. (2020) · Nature · doi:10.1038/s41586-020-2333-6 · Cited by 161 · see citing works
Self-citationMulti-domain, cell-envelope proteinases of lactic acid bacteria.
Siezen, R. J. (1999) · Antonie van Leeuwenhoek · doi:10.1023/a:1002036906922 · Cited by 144 · see citing works
Okamoto, S., Kawabata, S., Nakagawa, I., Okuno, Y., Goto, T., Sano, K., & Hamada, S. (2003) · Journal of Virology · doi:10.1128/jvi.77.7.4104-4112.2003 · Cited by 114 · see citing works
Understanding a protein fold: The physics, chemistry, and biology of α-helical coiled coils
Woolfson, D. N. (2023) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2023.104579 · Cited by 106 · see citing works
“The hemagglutinin story became more interesting as it unraveled; for example, revealing a spring-loaded switch to a longer trimeric CC leading to virus-host membrane fusion, Figure 1 D (46, 47), and targets for drug design (48, 49).”
Bird, G. H., Patten, J. J., Zavadoski, W., Barucci, N., Godes, M., Moyer, B. M., Owen, C. D., DaSilva-Jardine, P., Neuberg, D. S., Bowen, R. A., et al. (2024) · Nature Communications · doi:10.1038/s41467-023-44361-1 · Cited by 22 · see citing works
- Authors
- Bullough, P. A., Hughson, F. M., Skehel, J. J., & Wiley, D. C.
- Affiliations
- Harvard University (US)
- National Institute for Medical Research (GB)
- Howard Hughes Medical Institute (US)
- Venue
- Nature
- Published
- 1994-09-01
- Volume
- 371
- Issue
- 6492
- Pages
- 37-43
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W1978763290
- Cited by
- 1,564
- References
- 49
- Citations by year
- 2026: 19 · 2025: 16 · 2024: 22 · 2023: 22 · 2022: 30 · 2021: 32 · 2020: 39 · 2019: 25 · 2018: 44 · 2017: 29 · 2016: 39 · 2015: 43 · 2014: 58 · 2013: 54 · 2012: 49
- FWCI
- 72.46
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Epidemiology › Influenza Virus Research Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
- Keywords
- influenza virus, hemagglutinin, membrane fusion, low pH, conformational change, fusion peptide, protein refolding, protein structure, structural disorder
- MeSH terms
- Amino Acid Sequence, Computer Graphics, Hemagglutinins, Viral, Hydrogen-Ion Concentration, Membrane Fusion, Molecular Sequence Data, Mutation, Orthomyxoviridae, Peptide Fragments, Protein Conformation, Protein Folding, Crystallography, X-Ray, Hemagglutinin Glycoproteins, Influenza Virus
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review