Transcriptional activation by recruitment

Cited by (1,000)

Items 101–200 of 1,000

1. Different core promoters possess distinct regulatory activities in the Drosophila embryo
   Sumio Ohtsuki, Michael Levine, H. N. Cai · 1998 · Genes & Development
2. Protein-DNA binding: complexities and multi-protein codes
   Siggers, Trevor, Gordân, Raluca · 2014 · Nucleic Acids Research
3. Mitogen-activated protein kinases
   Saman Arbabi, Ronald V. Maier · 2002 · Critical Care Medicine
4. Therapeutic Strategies to Inhibit MYC
   Michael R. McKeown, James E. Bradner · 2014 · Cold Spring Harbor Perspectives in Medicine
5. Regulatory Enhancer–Core-Promoter Communication via Transcription Factors and Cofactors
   Zabidi, Muhammad A., Stark, Alexander · 2016 · Trends in Genetics
6. H2A.Z Is Required for Global Chromatin Integrity and for Recruitment of RNA Polymerase II under Specific Conditions
   Maryse Adam, François Robert, Marc Larochelle, Luc R. Gaudreau · 2001 · Molecular and Cellular Biology
7. DNA curvature and flexibility in vitro and in vivo
   Justin P. Peters, Louis James Maher · 2010 · Quarterly Reviews of Biophysics
8. The Leucine Zipper of NRL Interacts with the CRX Homeodomain
   Kenneth Patrick Mitton, Prabodh K. Swain, Shiming Chen, Siqun Xu, Donald J. Zack, Anand Swaroop · 2000 · Journal of Biological Chemistry
9. Drosophila Nipped-B Protein Supports Sister Chromatid Cohesion and Opposes the Stromalin/Scc3 Cohesion Factor To Facilitate Long-Range Activation of the cut Gene
   Robert A. Rollins, Maria Korom, Nathalie Aulner, Andrew Martens, Dale Dorsett · 2004 · Molecular and Cellular Biology
10. The Biology of Eukaryotic Promoter Prediction - A Review
    A. Pedersen, P. Baldi, Yves Chauvin, S. Brunak · 1999 · Computers and Chemistry
11. The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo
    Aimée M. Dudley, Claire Rougeulle, Fred Winston · 1999 · Genes & Development
12. In pursuit of design principles of regulatory sequences
    Levo, Michal, Segal, Eran · 2014 · Nature Reviews Genetics
13. Crystal structure of an IRF‐DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences
    Fujii, Yoshifumi, Shimizu, Toshiyuki, Kusumoto, Masahiro, Kyogoku, Yoshimasa, Taniguchi, Tadatsugu, Hakoshima, Toshio · 1999 · The EMBO Journal
14. Structural organization of yeast and mammalian mediator complexes.
    M. R. Dotson, Chao-Xing Yuan, R. Roeder, L. Myers, C. Gustafsson, Yi-Wei Jiang, Yang I. Li, R. Kornberg, F. Asturias · 2000 · Proceedings of the National Academy of Sciences of the United States of America
15. The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
    Li, Xiao-Yong, Thomas, Sean, Sabo, Peter J, Eisen, Michael B, Stamatoyannopoulos, John A, Biggin, Mark D · 2011 · Genome Biology
16. Transcriptional Co-activators CREB-binding Protein and p300 Regulate Chondrocyte-specific Gene Expression via Association with Sox9
    Masanao Tsuda, Shigeru Takahashi, Yuji K. Takahashi, Hiroshi Asahara · 2003 · Journal of Biological Chemistry
17. Identification of small-molecule antagonists that inhibit an activator:coactivator interaction
    Jennifer Lee Best, Carlos A. Amezcua, Bernhard M. Mayr, Lawrence Flechner, Christopher M. Murawsky, Beverly M. Emerson, Tsaffrir Zor, Kevin H. Gardner, Marc Montminy · 2004 · Proceedings of the National Academy of Sciences
18. RNA Polymerase II Holoenzymes and Subcomplexes*
    Vic E. Myer, R. Young · 1998 · Journal of Biological Chemistry
19. The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting
    Nikos B. Reppas, Joseph T. Wade, George McDonald Church, Kevin Struhl · 2006 · Molecular Cell
20. Histone deacetylases: a common molecular target for differentiation treatment of acute myeloid leukemias?
    Saverio Minucci, Clara Nervi, Francesco Lo‐Coco, Pier Giuseppe Pelicci · 2001 · Oncogene
21. The yeast Mediator complex and its regulation.
    Stefan Björklund, C. Gustafsson · 2005 · TIBS -Trends in Biochemical Sciences. Regular ed
22. Structure of the Tfb1/p53 Complex: Insights into the Interaction between the p62/Tfb1 Subunit of TFIIH and the Activation Domain of p53
    Paola Di Lello, Lisa M. Miller Jenkins, Tamara N. Jones, Bao D. Nguyen, Toshiaki J. Hara, Hiroshi Yamaguchi, Jimmy Dimitrios Dikeakos, Ettore Appella, Pascale Legault, James G. Omichinski · 2006 · Molecular Cell
23. Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase
    Oleg Laptenko, Jookyung Lee, Ivan B. Lomakin, Sergei Borukhov · 2003 · The EMBO Journal
24. Differential Transactivation by the p53 Transcription Factor Is Highly Dependent on p53 Level and Promoter Target Sequence
    Alberto Inga, Francesca Storici, Thomas A. Darden, Michael A. Resnick · 2002 · Molecular and Cellular Biology
25. Transcriptional regulators form diverse groups with context-dependent regulatory functions
    Gerald Stampfel, Tomáš Kazmar, Olga Frank, Sebastian Wienerroither, Franziska Reiter, Alexander Stark · 2015 · Nature
26. A unique combination of transcription factors controls differentiation of thyroid cells
    Giuseppe Damante, Gianluca Tell, Roberto Di Lauro · 2000 · Progress in nucleic acid research and molecular biology
27. In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer
    Sukesh R. Bhaumik, Tamal Raha, David P. Aiello, Michael R. Green · 2004 · Genes & Development
28. ChIP‐exo Method for Identifying Genomic Location of DNA‐Binding Proteins with Near‐Single‐Nucleotide Accuracy
    Ho Sung Rhee, B. Franklin Pugh · 2012 · Current Protocols in Molecular Biology
29. An Activator Target in the RNA Polymerase II Holoenzyme
    Sang Seok Koh, Aseem Z. Ansari, Mark Ptashne, Richard A. Young · 1998 · Molecular Cell
30. Protein–nucleic acid interactions and DNA conformation in a complex of human immunodeficiency virus type 1 reverse transcriptase with a double-stranded DNA template-primer
    Jianping Ding, Stephen H. Hughes, Eddy Arnold · 1997 · Biopolymers
31. AvrXa10 Contains an Acidic Transcriptional Activation Domain in the Functionally Conserved C Terminus
    Weiguang Zhu, Bing Yang, Jaishree M. Chittoor, Lowell B. Johnson, Frank F. White · 1998 · Molecular Plant-Microbe Interactions
32. Cloning of an Inr‐ and E‐box‐binding protein, TFII‐I, that interacts physically and functionally with USF1
    Ananda L. Roy, Hong Du, Polly D. Gregor, Carl D. Novina, Ernest Martinez, Robert G. Roeder · 1997 · The EMBO Journal
33. Expressed Protein Ligation, a Novel Method for Studying Protein-Protein Interactions in Transcription
    Konstantin Severinov, Tom W. Muir · 1998 · Journal of Biological Chemistry
34. Osmostress‐induced transcription by Hot1 depends on a Hog1‐mediated recruitment of the RNA Pol II
    Paula M. Alepuz, Eulàlia de Nadal, Meritxell Zapater, Gustav Ammerer, Francesc Posas · 2003 · The EMBO Journal
35. Enhancer selectivity in space and time: from enhancer–promoter interactions to promoter activation
    Yang, Jin H., Hansen, Anders S. · 2024 · Nature Reviews Molecular Cell Biology
36. The Aspergillus parasiticus protein AFLJ interacts with the aflatoxin pathway-specific regulator AFLR
    Perng‐Kuang Chang · 2003 · Molecular Genetics and Genomics
37. Multiple regulations of Keap1/Nrf2 system by dietary phytochemicals
    Si Qin, De‐Xing Hou · 2016 · Molecular Nutrition & Food Research
38. Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
    Ryan A. Flynn, Albert E. Almada, Jesse R. Zamudio, Phillip A. Sharp · 2011 · Proceedings of the National Academy of Sciences
39. The Engineering of Gene Regulatory Networks
    Mads Kærn, William J. Blake, James J. Collins · 2003 · Annual Review of Biomedical Engineering
40. Distant liaisons: long-range enhancer–promoter interactions in Drosophila
    Dale Dorsett · 1999 · Current Opinion in Genetics & Development
41. The Role of AHA Motifs in the Activator Function of Tomato Heat Stress Transcription Factors HsfA1 and HsfA2
    Pascal von Koskull‐Döring, Eckardt Treuter, Catherine Kistner, Ruth Lyck, Alexander Chen, Lutz Nover · 2000 · The Plant Cell
42. Visualizing transcription factor dynamics in living cells
    Zhe J. Liu, Robert Tjian · 2018 · The Journal of Cell Biology
43. Proteasome‐mediated degradation of transcriptional activators correlates with activation domain potency in vivo
    Elizabeth Molinari, Michael Z. Gilman, Sridaran Natesan · 1999 · The EMBO Journal
44. Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: sequence, orientation and spatial relationship to the core promoter
    Robert G. Martin, William Gillette, Sangkhee Rhee, Judah L. Rosner · 1999 · Molecular Microbiology
45. CLUES AND CONSEQUENCES OF DNA BENDING IN TRANSCRIPTION
    José Pérez‐Martín, Vı́ctor de Lorenzo · 1997 · Annual Review of Microbiology
46. Modulation of morphogenesis by noncanonical Wnt signaling requires ATF/CREB family–mediated transcriptional activation of TGFβ2
    Wenlai Zhou, Lizhu Lin, Årindam Majumdar, Xue Li, Xiaoxue Zhang, Wei Liu, Leah Etheridge, Yunqing Shi, James F. Martin, Wim Van de Ven et al. · 2007 · Nature Genetics
47. Activation of gene expression by small molecule transcription factors
    Anna K. Mapp, Aseem Z. Ansari, Mark Ptashne, Peter B. Dervan · 2000 · Proceedings of the National Academy of Sciences
48. Transactivation by Retinoid X Receptor–Peroxisome Proliferator-Activated Receptor γ (PPARγ) Heterodimers: Intermolecular Synergy Requires Only the PPARγ Hormone-Dependent Activation Function
    Ira G. Schulman, Gang Qin Shao, Richard A. Heyman · 1998 · Molecular and Cellular Biology
49. Mediator protein mutations that selectively abolish activated transcription
    Myers, Lawrence C., Gustafsson, Claes M., Hayashibara, Kathleen C., Brown, Patrick O., Kornberg, Roger D. · 1999 · Proceedings of the National Academy of Sciences
50. Enhancers and silencers: an integrated and simple model for their function
    Petros Kolovos, Tobias Knoch, Frank G. Grosveld, Peter R. Cook, Argyris Papantonis · 2012 · Epigenetics & Chromatin
51. Identification of Promoter Regions and Regulatory Sites
    Victor V. Solovyev, Ilham Ayub Shahmuradov, Asaf A. Salamov · 2010 · Methods in molecular biology
52. The RNA polymerase I transcription machinery
    Jackie Russell, Joost C.B.M. Zomerdijk · 2006 · Biochemical Society Symposia
53. P/CAF associates with cyclin D1 and potentiates its activation of the estrogen receptor
    Christine M. McMahon, Tuangporn Suthiphongchai, James DiRenzo, Mark E. Ewen · 1999 · Proceedings of the National Academy of Sciences
54. Histone Marks in the ‘Driver’s Seat’: Functional Roles in Steering the Transcription Cycle
    Leah A. Gates, Charles E. Foulds, Bert W. O’Malley · 2017 · Trends in Biochemical Sciences
55. Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation During DNA Replication
    Thelma M. Escobar, Ozgur Oksuz, Ricardo Saldaña-Meyer, Nicolas Descostes, Roberto Bonasio, Danny Reinberg · 2019 · Cell
56. Role of General and Gene-specific Cofactors in the Regulation of Eukaryotic Transcription
    Robert G. Roeder · 1998 · Cold Spring Harbor Symposia on Quantitative Biology
57. Cooperativity in Transcription Factor Binding to the Coactivator CREB-binding Protein (CBP)
    Goto, Natalie K., Zor, Tsaffrir, Martinez-Yamout, Maria, Dyson, H. Jane, Wright, Peter E. · 2002 · Journal of Biological Chemistry
58. A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
    Bryan J. Venters, B. Franklin Pugh · 2009 · The FASEB Journal
59. A systematic analysis of the factors that determine the strength of pre‐mRNA splicing enhancers
    Brenton R. Graveley, Klemens J. Hertel, Tom Maniatis · 1998 · The EMBO Journal
60. Rapid activity-induced transcription of Arc and other IEGs relies on poised RNA polymerase II
    Ramendra N. Saha, Erin M. Wissink, Emma R. Bailey, Meilan Zhao, David C. Fargo, Ji‐Yeon Hwang, Kelly R Daigle, J. Daniel Fenn, Karen Adelman, Serena M. Dudek · 2011 · Nature Neuroscience
61. High‐throughput discovery of functional disordered regions: investigation of transactivation domains
    Charles N. J. Ravarani, Tamara Y. Erkina, Greet De Baets, Daniel C. Dudman, Alexandre M. Erkine, M. Madan Babu · 2018 · Molecular Systems Biology
62. SAF-B protein couples transcription and pre-mRNA splicing to SAR/MAR elements
    Oliver Nayler · 1998 · Nucleic Acids Research
63. Specific DNA Binding of Stat5, but Not of Glucocorticoid Receptor, Is Required for Their Functional Cooperation in the Regulation of Gene Transcription
    Elisabeth Stoecklin, Manuela Wissler, Richard Moriggl, Bernd Groner · 1997 · Molecular and Cellular Biology
64. Electrostatic mechanisms of DNA deformation.
    L. Williams, L. Maher · 2000 · Annual Review of Biophysics and Biomolecular Structure
65. Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons
    Kevin L. Griffith, Ishita M. Shah, Richard E. Wolf · 2004 · Molecular Microbiology
66. Enhancer Logic and Mechanics in Development and Disease
    Ryan A. Rickels, Ali Shilatifard · 2018 · Trends in Cell Biology
67. Systematic dissection of genomic features determining transcription factor binding and enhancer function
    Grossman, Sharon R., Zhang, Xiaolan, Wang, Li, Engreitz, Jesse, Melnikov, Alexandre, Rogov, Peter, Tewhey, Ryan, Isakova, Alina, Deplancke, Bart, Bernstein, Bradley E. et al. · 2017 · Proceedings of the National Academy of Sciences
68. The Ability of Positive Transcription Elongation Factor b To Transactivate Human Immunodeficiency Virus Transcription Depends on a Functional Kinase Domain, Cyclin T1, and Tat
    Koh Fujinaga, Thomas P. Cujec, Junmin Peng, Judit Garriga, David H. Price, Xavier Graña, Boris Matija Peterlin · 1998 · Journal of Virology
69. Global Regulation of Promoter Melting in Naive Lymphocytes
    Kouzine, Fedor, Wojtowicz, Damian, Yamane, Arito, Resch, Wolfgang, Kieffer-Kwon, Kyong-Rim, Bandle, Russell, Nelson, Steevenson, Nakahashi, Hirotaka, Awasthi, Parirokh, Feigenbaum, Lionel et al. · 2013 · Cell
70. How eukaryotic genes are transcribed
    Bryan J. Venters, B. Franklin Pugh · 2009 · Critical Reviews in Biochemistry and Molecular Biology
71. Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes
    Anne M. L. Barnard, Alan J. Wolfe, Stephen J. W. Busby · 2004 · Current Opinion in Microbiology
72. The FBP Interacting Repressor Targets TFIIH to Inhibit Activated Transcription
    Juhong Liu, Liusheng He, Irene J. Collins, Hui Ge, Daniel E. Libutti, Junfa Li, Jean‐Marc Egly, David Levens · 2000 · Molecular Cell
73. Stimulus-Specific Assembly of Enhancer Complexes on the Tumor Necrosis Factor Alpha Gene Promoter
    James V. Falvo, Adele M. Uglialoro, Brigitta M. N. Brinkman, Menie Merika, Bhavin S. Parekh, Eunice Y. Tsai, Hadley C. King, Anthony D. Morielli, Ernest G. Peralta, Tom Maniatis et al. · 2000 · Molecular and Cellular Biology
74. Analysis of an Activator:Coactivator Complex Reveals an Essential Role for Secondary Structure in Transcriptional Activation
    David Parker, Ulupi S. Jhala, Ishwar Radhakrishnan, Michael B. Yaffe, Christine Reyes, Andrew I. Shulman, Lewis C. Cantley, Peter E. Wright, Marc Montminy · 1998 · Molecular Cell
75. Conversion of the omega subunit of Escherichia coli RNA polymerase into a transcriptional activator or an activation target
    Simon L. Dove, Ann Hochschild · 1998 · Genes & Development
76. UNDERSTANDING GENE AND ALLELE FUNCTION WITH TWO-HYBRID METHODS
    Roger Brent, Russell L. Finley · 1997 · Annual Review of Genetics
77. Role of Histone Acetylation in the Assembly and Modulation of Chromatin Structures
    Anthony T. Annunziato, Jeffrey C. Hansen · 2001 · Gene Expression
78. Poised RNA Polymerase II Gives Pause for Thought
    Thanasis Margaritis, Frank C. P. Holstege · 2008 · Cell
79. Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach
    Leendert Willem Hamoen · 2002 · Nucleic Acids Research
80. Chromatin Remodeling and Transcriptional Regulation
    Ruijia Luo, Douglas C. Dean · 1999 · JNCI Journal of the National Cancer Institute
81. Conformational preferences in the Ser133‐phosphorylated and non‐phosphorylated forms of the kinase inducible transactivation domain of CREB
    Ishwar Radhakrishnan, Gabriela C. Pérez-Alvarado, H. Jane Dyson, Peter E. Wright · 1998 · FEBS Letters
82. Telomere looping permits gene activation by a downstream UAS in yeast
    Derik de Bruin, Zafar Zaman, Rachel A. Liberatore, Mark Ptashne · 2001 · Nature
83. “Structure”-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation
    John Joseph Ferrie, Jonathan P. Karr, Robert Tjian, Xavier Darzacq · 2022 · Molecular Cell
84. GAL4 Is Regulated by the RNA Polymerase II Holoenzyme–Associated Cyclin-Dependent Protein Kinase SRB10/CDK8
    Martin Hirst, Michael Steffen Kobor, Neena Kuriakose, Jack Greenblatt, Ivan Sadowski · 1999 · Molecular Cell
85. Common themes in the function of transcription and splicing enhancers
    Klemens J. Hertel, Kristen W. Lynch, Tom Maniatis · 1997 · Current Opinion in Cell Biology
86. Role for the nuclear receptor-binding SET domain protein 1 (NSD1) methyltransferase in coordinating lysine 36 methylation at histone 3 with RNA polymerase II function
    Agda Karina Lucio-Eterovic, Melissa M. Singh, Jeffrey E. Gardner, Chendhore S. Veerappan, Judd Christopher Rice, Phillip B. Carpenter · 2010 · Proceedings of the National Academy of Sciences
87. The VP16 Activation Domain Interacts with Multiple Transcriptional Components as Determined by Protein-Protein Cross-linking in Vivo
    Daniel B. Hall, Kevin Struhl · 2002 · Journal of Biological Chemistry
88. Reverse recruitment: The Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation
    Balaraj B. Menon, Nayan Jyoti Sarma, Satish Pasula, Stephen J. Deminoff, Kristine A. Willis, Kellie E. Barbara, Brenda Andrews, George M. Santangelo · 2005 · Proceedings of the National Academy of Sciences
89. A Novel Transcriptional Coactivator, p52, Functionally Interacts with the Essential Splicing Factor ASF/SF2
    Hui Ge, Yuanzheng Si, Alan P. Wolffe · 1998 · Molecular Cell
90. Physical and functional interactions of Arabidopsis ADA2 transcriptional coactivator proteins with the acetyltransferase GCN5 and with the cold-induced transcription factor CBF1
    Yaopan Mao, Kanchan A. Pavangadkar, Michael F. Thomashow, Steven J. Triezenberg · 2006 · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression
91. Spatial Positive Feedback at the Onset of Mitosis
    Silvia D. M. Santos, Roy Wollman, Tobias Meyer, James E. Ferrell · 2012 · Cell
92. At MYB61, an R2R3‐MYB transcription factor, functions as a pleiotropic regulator via a small gene network
    Julia M. Romano, Christian Dubos, Michael B. Prouse, Olivia Wilkins, Henry Hong, Mervin Poole, Kyu‐Young Kang, Eryang Li, Carl J. Douglas, Tamara L. Western et al. · 2012 · New Phytologist
93. DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo
    Anthony Mathelier, Beibei Xin, Tsu-Pei Chiu, Lin Yang, Remo Rohs, Wyeth W. Wasserman · 2016 · Cell Systems
94. Protein–Protein Contacts that Activate and Repress Prokaryotic Transcription
    Ann Hochschild, Simon L. Dove · 1998 · Cell
95. MarA, SoxS and Rob of Escherichia coli – Global Regulators of Multidrug Resistance, Virulence and Stress Response
    Valérie Duval · 2013 · International Journal of Biotechnology for Wellness Industries
96. HIV-1 Tat Stimulates Transcription Complex Assembly through Recruitment of TBP in the Absence of TAFs
    Tamal Raha, Sunfa Cheng, Michael R. Green · 2005 · PLoS Biology
97. Four dimers of λ repressor bound to two suitably spaced pairs of λ operators form octamers and DNA loops over large distances
    Bernard Révet, B. von Wilcken‐Bergmann, Heike Bessert, Andrew J Barker, Benno Müller‐Hill · 1999 · Current Biology
98. Distinct Subdomains of Human TAFII130 Are Required for Interactions with Glutamine-Rich Transcriptional Activators
    Daman Saluja, Milo F. Vassallo, Naoko Tanese · 1998 · Molecular and Cellular Biology
99. Chapter 4 β‐Globin Regulation and Long‐Range Interactions
    Palstra, Robert‐Jan, de Laat, Wouter, Grosveld, Frank · 2008 · Advances in genetics
100. Role of Secondary Structure in Discrimination between Constitutive and Inducible Activators
     David Parker, Morris Rivera, Tsaffrir Zor, Alexandra Henrion‐Caude, Ishwar Radhakrishnan, Alok Kumar, Linda H. Shapiro, Peter E. Wright, Marc Montminy, Paul K. Brindle · 1999 · Molecular and Cellular Biology