The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins
Abstract
Ubiquitination is a post-translation modification in which ubiquitin chains or single ubiquitin molecules are appended to target proteins, giving rise to poly- or monoubiquitination, respectively. Polyubiquitination targets proteins for destruction by the proteasome. The role of monoubiquitination is less understood, although a function in membrane trafficking is emerging, at least in yeast. Here we report that a short amino-acid stretch at the carboxy-termini of the monoubiquitinated endocytic proteins Eps15 and eps15R is indispensable for their monoubiquitination. A similar sequence, also required for this modification, is found in other cytosolic endocytic proteins, such as epsins and Hrs. These sequences comprise a protein motif, UIM (ref. 6), which has been proposed to bind to ubiquitin. We confirm this for the UIMs of eps15, eps15R, epsins and Hrs. Thus, the same motif in several endocytic proteins is responsible for ubiquitin recognition and monoubiquitination. Our results predict the existence of a UIM:ubiquitin-based intracellular network. Eps15/eps15R, epsins and Hrs may function as adaptors between ubiquitinated membrane cargo and either the clathrin coat or other endocytic scaffolds. In addition, through their own ubiquitination, they may further contribute to the amplification of this network in the endocytic pathway.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Epsin might be part of the machinery that recognizes ubiquitin as an endocytic signal.
“Epsin might be part of the long-sought-after machinery that recognizes ubiquitin as an endocytic signal (Polo et al., 2002).”
From Disabled‐2 exhibits the properties of a cargo‐selective endocytic clathrin adaptor (2002) · cites this paper as Polo et al., 2002
Eps15 can bind ubiquitin directly.
“The CSF-1 receptor utilizes ubiquitin as an endocytic signal (Lee et al., 1999), but the NPF triplets in Dab2 could recruit eps15, which, like epsin, can bind ubiquitin directly (Polo et al., 2002).”
From Disabled‐2 exhibits the properties of a cargo‐selective endocytic clathrin adaptor (2002) · cites this paper as Polo et al., 2002
Epsins are a class of ubiquitin adaptors implicated in internalization and sorting of plasma membrane receptors.
“Epsins are a class of ubiquitin adaptors that are implicated in internalization and sorting of plasma membrane receptors ( 39, 40, 47 ), and are implicated in tuning, among other, EGFR ( 27, 38 ), Notch ( 48 ), and VEFGR2 signaling ( 49 ).”
From The LXR-IDOL axis defines a clathrin-, caveolae-, and dynamin-independent endocytic route for LDLR internalization and lysosomal degradation (2013) · cites this paper as [39]
Citations
Cites
Gaullier, J.-M., Simonsen, A., D'Arrigo, A., Bremnes, B., Stenmark, H., & Aasland, R. (1998) · Nature · doi:10.1038/28767 · Cited by 553
Flagged first, then by citations
Research works printed but not linked: 29
- Hicke, L. A new ticket for entry into budding vesicles—ubiquitin. Cell 106, 527–530 (2001). · DOI
- Weissman, A. M. Themes and variations on ubiquitination. Nature Rev. Mol. Cell Biol. 2, 169–178 (2001). · DOI
- Hicke, L. Protein regulation by monoubiquitin. Nature Rev. Mol. Cell Biol. 2, 195–201 (2001). · DOI
- Laney, J. D. & Hochstrasser, M. Substrate targeting in the ubiquitin system. Cell 97, 427–430 (1999). · DOI
- Katzmann, D. J., Babst, M. & Emr, S. D. Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I. Cell 106, 145–155 (2001). · DOI
- Hofmann, K. & Falquet, l. A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems. Trends Biochem. Sci. 26, 347–350 (2001). · DOI
- van Delft, S., Govers, R., Strous, G J., Verkleij, A. J. & van Bergen en Henegouwen, P. M. Epidermal growth factor induces ubiquitination of Eps15. J. Biol. Chem. 272, 14013–14016 (1997). · DOI
- Coda, L. et al. Eps15R is a tyrosine kinase substrate with characteristics of a docking protein possibly involved in coated pits-mediated internalization. J. Biol. Chem. 273, 3003–3012 (1998). · DOI
- Santolini, E., Salcini, A. E., Kay, B. K., Yamabhai, M. & Di Fiore, P. P. The EH network. Exp. Cell Res. 253, 186–209 (1999). · DOI · Paper page
- Wong, W. T. et al. A protein-binding domain, EH, identified in the receptor tyrosine kinase substrate Eps15 and conserved in evolution. Proc. Natl Acad. Sci. USA 92, 9530–9534 (1995). · DOI
- Benmerah, A., Begue, B., Dautry-Varsat, A. & Cerf-Bensussan, N. The ear of alpha-adaptin interacts with the COOH-terminal domain of the Eps15 protein. J. Biol. Chem. 271, 12111–12116 (1996). · DOI
- Iannolo, G. et al. Mapping of the molecular determinants involved in the interaction between eps15 and AP-2. Cancer Res. 57, 240–245 (1997).
- Chen, H. et al. Epsin is an EH-domain-binding protein implicated in clathrin-mediated endocytosis. Nature 394, 793–797 (1998). · DOI · Paper page
- Komada, M. & Kitamura, N. Growth factor-induced tyrosine phosphorylation of Hrs, a novel 115-kilodalton protein with a structurally conserved putative zinc finger domain. Mol. Cell Biol. 15, 6213–6221 (1995). · DOI · Paper page
- Young, P., Deveraux, Q., Beal, R. E., Pickart, C. M. & Rechsteiner, M. Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a. J. Biol. Chem. 273, 5461–5467 (1998). · DOI
- van Nocker, S. et al. The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover. Mol. Cell Biol. 16, 6020–6028 (1996). · DOI
- Beal, R., Deveraux, Q., Xia, G., Rechsteiner, M. & Pickart, C. Surface hydrophobic residues of multiubiquitin chains essential for proteolytic targeting. Proc. Natl Acad. Sci. USA 93, 861–866 (1996). · DOI
- Deveraux, Q., Ustrell, V., Pickart, C. & Rechsteiner, M. A 26S protease subunit that binds ubiquitin conjugates. J. Biol. Chem. 269, 7059–7061 (1994). · DOI
- Huibregtse, J. M., Scheffner, M., Beaudenon, S. & Howley, P. M. A family of proteins structurally and functionally related to the E6-AP ubiquitin-protein ligase. Proc. Natl Acad. Sci. USA 92, 2563–2567 (1995). · DOI
- Staub, O. et al. WW domains of Nedd4 bind to the proline-rich PY motifs in the epithelial Na+ channel deleted in Liddle's syndrome. EMBO J. 15, 2371–2380 (1996). · DOI
- Wang, G. et al. Localization of the Rsp5p ubiquitin-protein ligase at multiple sites within the endocytic pathway. Mol. Cell Biol. 21, 3564–3575 (2001). · DOI
- Dunn, R. & Hicke, L. Multiple roles for Rsp5p-dependent ubiquitination at the internalization step of endocytosis. J. Biol. Chem. 276, 25974–25981 (2001). · DOI
- Dunn, R. & Hicke, L. Domains of the Rsp5 ubiquitin-protein ligase required for receptor-mediated and fluid-phase endocytosis. Mol. Biol. Cell 12, 421–435 (2001). · DOI
- Gagny, B. et al. A novel EH domain protein of Saccharomyces cerevisiae, Ede1p, involved in endocytosis. J. Cell. Sci. 113, 3309–3319 (2000). · DOI
- Jensen, J. P., Bates, P. W., Yang, M., Vierstra, R. D. & Weissman, A. M. Identification of a family of closely related human ubiquitin conjugating enzymes. J. Biol. Chem. 270, 30408–30414 (1995). · DOI
- Itoh, T. et al. Role of the ENTH domain in phosphatidyl inositol-4,5-bisphosphate binding and endocytosis. Science 291, 1047–1051 (2001). · DOI · Paper page
- Patki, V., Lawe, D. C., Corvera, AS., Virbasius, J. V. & Chawla, A. A functional PtdIns(3)P-binding motif. Nature 394, 433–434 (1998). · DOI
- Burd, C. G. & Emr, S. D. Phosphatidylinositol(3)-phosphate signaling mediated by specific binding to RING FYVE domains. Mol. Cell 2, 157–162 (1998). · DOI
- Avantaggiati, M. L. et al. The SV40 large T antigen and adenovirus E1a oncoproteins interact with distinct isoforms of the transcriptional co-activator, p300. EMBO J. 15, 2236–2248 (1996). · DOI
Cited by
Sorted by citations
Komander, D., & Rape, M. (2012) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060310-170328 · Cited by 3,679
Doherty, G. J., & McMahon, H. T. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.78.081307.110540 · Cited by 3,075
Building ubiquitin chains: E2 enzymes at work
Ye, Y., & Rape, M. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2780 · Cited by 989
Endocytosis and signaling: Cell logistics shape the eukaryotic cell plan
Sigismund, S., Confalonieri, S., Ciliberto, A., Polo, S., Scita, G., & Di Fiore, P. P. (2012) · Physiological Reviews · doi:10.1152/physrev.00005.2011 · Cited by 338
Self-citationPrinciples of Ubiquitin-Dependent Signaling
Oh, E., Akopian, D., & Rape, M. (2018) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100617-062802 · Cited by 339
Disabled‐2 exhibits the properties of a cargo‐selective endocytic clathrin adaptor
Mishra, S. K., Keyel, P. A., Hawryluk, M. J., Agostinelli, N. R., Watkins, S. C., & Traub, L. M. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf487 · Cited by 302
Kowanetz, K., Crosetto, N., Haglund, K., Schmidt, M. H. H., Heldin, C.-H., & Dikic, I. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m403759200 · Cited by 147
Spoiled for Choice: Diverse Endocytic Pathways Function at the Cell Surface
Thottacherry, J. J., Sathe, M., Prabhakara, C., & Mayor, S. (2019) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100617-062710 · Cited by 122
Sorrentino, V., Nelson, J. K., Maspero, E., Marques, A. R. A., Scheer, L., Polo, S., & Zelcer, N. (2013) · Journal of Lipid Research · doi:10.1194/jlr.m037713 · Cited by 68
Self-citation
Metadata
- Authors
- Polo, S., Sigismund, S., Faretta, M., Guidi, M., Capua, M. R., Bossi, G., Chen, H., De Camilli, P., & Di Fiore, P. P.
- Venue
- Nature
- Published
- 2002-03-28
- Volume
- 416
- Issue
- 6879
- Pages
- 451-455
- ISSN
- 0028-0836
- 1476-4687
- Cited by
- 571
- References
- 1
- Language
- en
- Update notices
- erratum (2002-05-02)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review