Misfolded proteins partition between two distinct quality control compartments
Open accessAbstract
The accumulation of misfolded proteins in intracellular amyloid inclusions, typical of many neurodegenerative disorders including Huntington's and prion disease, is thought to occur after failure of the cellular protein quality control mechanisms. Here we examine the formation of misfolded protein inclusions in the eukaryotic cytosol of yeast and mammalian cell culture models. We identify two intracellular compartments for the sequestration of misfolded cytosolic proteins. Partition of quality control substrates to either compartment seems to depend on their ubiquitination status and aggregation state. Soluble ubiquitinated misfolded proteins accumulate in a juxtanuclear compartment where proteasomes are concentrated. In contrast, terminally aggregated proteins are sequestered in a perivacuolar inclusion. Notably, disease-associated Huntingtin and prion proteins are preferentially directed to the perivacuolar compartment. Enhancing ubiquitination of a prion protein suffices to promote its delivery to the juxtanuclear inclusion. Our findings provide a framework for understanding the preferential accumulation of amyloidogenic proteins in inclusions linked to human disease.
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Because small HSPs can bind abnormal proteins multivalently, they might seed and concentrate aggregate material.
“Having multi-valent binding ability for aberrant proteins, the small HSPs may act to seed and concentrate aggregate material, consistent with findings in vivo (Escusa-Toret et al., 2013; Kaganovich et al., 2008; Specht et al., 2011) and in vitro (Haslbeck et al., 2005; Jiao et al., 2005).”
From Widespread Proteome Remodeling and Aggregation in Aging C. elegans (2015) · cites this paper as Kaganovich et al., 2008
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RETRACTED ARTICLE: A specific amyloid-β protein assembly in the brain impairs memory
Lesné, S., Koh, M. T., Kotilinek, L., Kayed, R., Glabe, C. G., Yang, A., Gallagher, M., & Ashe, K. H. (2006) · Nature · doi:10.1038/nature04533 · Cited by 2,769 · see citing works
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Chiti, F., & Dobson, C. M. (2006) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.75.101304.123901 · Cited by 6,435 · see citing works
Jacob, H. (1988) · Bioelectrochemistry and Bioenergetics · doi:10.1016/0302-4598(88)80052-7 · Cited by 4,911 · see citing works
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N. G., Palmer, A. E., & Tsien, R. Y. (2004) · Nature Biotechnology · doi:10.1038/nbt1037 · Cited by 4,619 · see citing works
Pankiv, S., Clausen, T. H., Lamark, T., Brech, A., Bruun, J.-A., Outzen, H., Øvervatn, A., Bjørkøy, G., & Johansen, T. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m702824200 · Cited by 4,578 · see citing works
Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., et al. (1999) · Science · doi:10.1126/science.285.5429.901 · Cited by 3,953 · see citing works
Adapting Proteostasis for Disease Intervention
Balch, W. E., Morimoto, R. I., Dillin, A., & Kelly, J. W. (2008) · Science · doi:10.1126/science.1141448 · Cited by 2,495 · see citing works
Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases
Bucciantini, M., Giannoni, E., Chiti, F., Baroni, F., Formigli, L., Zurdo, J., Taddei, N., Ramponi, G., Dobson, C. M., & Stefani, M. (2002) · Nature · doi:10.1038/416507a · Cited by 2,434 · see citing works
Impairment of the Ubiquitin-Proteasome System by Protein Aggregation
Bence, N., Sampat, R. M., & Kopito, R. R. (2001) · Science · doi:10.1126/science.292.5521.1552 · Cited by 2,192 · see citing works
Self-citationInclusion body formation reduces levels of mutant huntingtin and the risk of neuronal death
Arrasate, M., Mitra, S., Schweitzer, E. S., Segal, M. R., & Finkbeiner, S. (2004) · Nature · doi:10.1038/nature02998 · Cited by 1,979 · see citing works
Aggresomes, inclusion bodies and protein aggregation
Kopito, R. R. (2000) · Trends in Cell Biology · doi:10.1016/s0962-8924(00)01852-3 · Cited by 1,906 · see citing works
Self-citationThe roles of intracellular protein-degradation pathways in neurodegeneration
Rubinsztein, D. C. (2006) · Nature · doi:10.1038/nature05291 · Cited by 1,625 · see citing works
Autophagy: molecular machinery for self-eating
Yorimitsu, T., & Klionsky, D. J. (2005) · Cell Death and Differentiation · doi:10.1038/sj.cdd.4401765 · Cited by 1,540 · see citing works
α-Synuclein Is Degraded by Both Autophagy and the Proteasome
Webb, J. L., Ravikumar, B., Atkins, J., Skepper, J. N., & Rubinsztein, D. C. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m300227200 · Cited by 1,429 · see citing works
CHAFFEY, N. J. (2001) · Trends in Plant Science · doi:10.1016/s1360-1385(01)01902-1 · Cited by 1,043 · see citing works
Modulation of neurodegeneration by molecular chaperones
Muchowski, P. J., & Wacker, J. L. (2004) · Nature reviews. Neuroscience · doi:10.1038/nrn1587 · Cited by 1,021 · see citing works
Development and Use of Fluorescent Protein Markers in Living Cells
Lippincott‐Schwartz, J., & Patterson, G. H. (2003) · Science · doi:10.1126/science.1082520 · Cited by 993 · see citing works
Cellular Defenses against Unfolded Proteins
Sherman, M. Y., & Goldberg, A. L. (2001) · Neuron · doi:10.1016/s0896-6273(01)00177-5 · Cited by 984 · see citing works
Opposing activities protect against age-onset proteotoxicity
Cohen, E., Bieschke, J., Perciavalle, R. M., Kelly, J. W., & Dillin, A. (2006) · Science · doi:10.1126/science.1124646 · Cited by 843 · see citing works
Yeast Cells Provide Insight into Alpha-Synuclein Biology and Pathobiology
Outeiro, T. F., & Lindquist, S. L. (2003) · Science · doi:10.1126/science.1090439 · Cited by 808 · see citing works
Progressive disruption of cellular protein folding in models of polyglutamine diseases
Gidalevitz, T., Ben-Zvi, A., Ho, K. H., Brignull, H. R., & Morimoto, R. I. (2006) · Science · doi:10.1126/science.1124514 · Cited by 643 · see citing works
Small molecules enhance autophagy and reduce toxicity in Huntington's disease models
Sarkar, S., Perlstein, E. O., Imarisio, S., Pineau, S., Cordenier, A., Maglathlin, R. L., Webster, J. A., Lewis, T. A., O’Kane, C. J., Schreiber, S. L., et al. (2007) · Nature Chemical Biology · doi:10.1038/nchembio883 · Cited by 596 · see citing works
Kuma, A., Matsui, M., & Mizushima, N. (2007) · Autophagy · doi:10.4161/auto.4012 · Cited by 555 · see citing works
Krobitsch, S., & Lindquist, S. L. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.4.1589 · Cited by 546 · see citing works
Cellular Toxicity of Polyglutamine Expansion Proteins
Schaffar, G., Breuer, P., Boteva, R. N., Behrends, C., Tzvetkov, N., Strippel, N., Sakahira, H., Siegers, K., Hayer-Hartl, M. K., & Hartl, F. U. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.06.029 · Cited by 428 · see citing works
Aggresomes protect cells by enhancing the degradation of toxic polyglutamine-containing protein
Taylor, J. P. (2003) · Human Molecular Genetics · doi:10.1093/hmg/ddg074 · Cited by 425 · see citing works
S. cerevisiae 26S protease mutants arrest cell division in G2/metaphase
Ghislain, M., Udvardy, A., & Mann, C. (1993) · Nature · doi:10.1038/366358a0 · Cited by 421 · see citing works
Chen, P., Johnson, P. R., Sommer, T., Jentsch, S., & Hochstrasser, M. (1993) · Cell · doi:10.1016/0092-8674(93)90426-q · Cited by 392 · see citing works
Ultrastructure of the yeast actin cytoskeleton and its association with the plasma membrane.
Mulholland, J., Preuss, D., Moon, A., Wong, A. M., Drubin, D. G., & Botstein, D. (1994) · The Journal of Cell Biology · doi:10.1083/jcb.125.2.381 · Cited by 358 · see citing works
Iwata, A., Christianson, J. C., Bucci, M., Ellerby, L., Nukina, N., Forno, L. S., & Kopito, R. R. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505801102 · Cited by 318 · see citing works
Self-citationTam, S. J., Geller, R., Spiess, C., & Frydman, J. (2006) · Nature Cell Biology · doi:10.1038/ncb1477 · Cited by 308 · see citing works
Self-citationRoles of molecular chaperones in protein misfolding diseases
Barral, J. M., Broadley, S. A., Schaffar, G., & Hartl, F. U. (2004) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2003.12.010 · Cited by 295 · see citing works
The Doa4 Deubiquitinating Enzyme Is Required for Ubiquitin Homeostasis in Yeast
Swaminathan, S., Amerik, A. Y., & Hochstrasser, M. (1999) · Molecular Biology of the Cell · doi:10.1091/mbc.10.8.2583 · Cited by 284 · see citing works
Protein quality control: chaperones culling corrupt conformations
McClellan, A. J., Tam, S. J., Kaganovich, D., & Frydman, J. (2005) · Nature Cell Biology · doi:10.1038/ncb0805-736 · Cited by 280 · see citing works
Self-citationFolding and Quality Control of the VHL Tumor Suppressor Proceed through Distinct Chaperone Pathways
McClellan, A. J., Scott, M. D., & Frydman, J. (2005) · Cell · doi:10.1016/j.cell.2005.03.024 · Cited by 260 · see citing works
Self-citationPolarised Asymmetric Inheritance of Accumulated Protein Damage in Higher Eukaryotes
Rujano, M. A., Bosveld, F., Salomons, F. A., Dijk, F., van Waarde, M. A. W. H., van der Want, J. J. L., de Vos, R. A. I., Brunt, E. R. P., Sibon, O. C. M., & Kampinga, H. H. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040417 · Cited by 246 · see citing works
Formation of the VHL–Elongin BC Tumor Suppressor Complex Is Mediated by the Chaperonin TRiC
Feldman, D. E., Thulasiraman, V., Ferreyra, R. G., & Frydman, J. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80233-6 · Cited by 238 · see citing works
Self-citationEnenkel, C., Lehmann, A. D., & Kloetzel, P. (1998) · The EMBO Journal · doi:10.1093/emboj/17.21.6144 · Cited by 216 · see citing works
ALIS are Stress-Induced Protein Storage Compartments for Substrates of the Proteasome and Autophagy
Szeto, J., Kaniuk, N. A., Canadien, V., Nisman, R., Mizushima, N., Yoshimori, T., Bazett‐Jones, D. P., & Brumell, J. H. (2006) · Autophagy · doi:10.4161/auto.2731 · Cited by 194 · see citing works
A Novel Quality Control Compartment Derived from the Endoplasmic Reticulum
Kamhi-Nesher, S., Shenkman, M., Tolchinsky, S., Fromm, S. V., Ehrlich, R. L., & Lederkremer, G. Z. (2001) · Molecular Biology of the Cell · doi:10.1091/mbc.12.6.1711 · Cited by 192 · see citing works
Kruse, K. B., Brodsky, J. L., & McCracken, A. A. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e04-09-0779 · Cited by 192 · see citing works
The Oxidative Stress Metabolite 4-Hydroxynonenal Promotes Alzheimer Protofibril Formation
Siegel, S. J., Bieschke, J., Powers, E. T., & Kelly, J. W. (2007) · Biochemistry · doi:10.1021/bi061853s · Cited by 186 · see citing works
Involvement of macroautophagy in the dissolution of neuronal inclusions
Rideout, H. J., Lang‐Rollin, I., & Stefanis, L. (2004) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2004.05.008 · Cited by 167 · see citing works
Matsumoto, G., Stojanovic, A., Holmberg, C. I., Kim, S., & Morimoto, R. I. (2005) · The Journal of Cell Biology · doi:10.1083/jcb.200504050 · Cited by 162 · see citing works
Melville, M. W., McClellan, A. J., Meyer, A. S., Darveau, A., & Frydman, J. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.9.3141-3151.2003 · Cited by 156 · see citing works
Self-citationA network of protein interactions determines polyglutamine toxicity
Duennwald, M. L., Jagadish, S., Giorgini, F., Muchowski, P. J., & Lindquist, S. L. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604548103 · Cited by 151 · see citing works
Erjavec, N., & Nyström, T. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0701634104 · Cited by 127 · see citing works
Matsumoto, G., Kim, S., & Morimoto, R. I. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m509201200 · Cited by 112 · see citing works
Huyer, G., Longsworth, G. L., Mason, D. L., Mallampalli, M. P., McCaffery, J. M., Wright, R., & Michaelis, S. (2003) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-07-0546 · Cited by 93 · see citing works
Autophagy: an ER Protein Quality Control Process
Kruse, K. B., Brodsky, J. L., & McCracken, A. A. (2006) · Autophagy · doi:10.4161/auto.2.2.2388 · Cited by 89 · see citing works
Vang, S., Corydon, T. J., Børglum, A. D., Scott, M. D., Frydman, J., Mogensen, J., Gregersen, N., & Bross, P. (2005) · FEBS Journal · doi:10.1111/j.1742-4658.2005.04630.x · Cited by 77 · see citing works
Self-citationWright, R., & Rine, J. (1989) · Methods in cell biology · doi:10.1016/s0091-679x(08)61624-6 · Cited by 66 · see citing works
Betting, J., & Seufert, W. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.42.25790 · Cited by 56 · see citing works
Tkach, J. M., & Glover, J. R. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m400782200 · Cited by 47 · see citing works
Sec61p Is the Main Ribosome Receptor in the Endoplasmic Reticulum of Saccharomyces cerevisiae
Prinz, A., Hartmann, E., & Kalies, K. (2000) · Biological Chemistry · doi:10.1515/bc.2000.126 · Cited by 35 · see citing works
Tongaonkar, P., Beck, K., Shinde, U. P., & Madura, K. (1999) · Analytical Biochemistry · doi:10.1006/abio.1999.4190 · Cited by 13 · see citing works
Umeda, K., Yoko‐o, T., Nakayama, K.-I., Suzuki, T., & Jigami, Y. (2000) · Yeast · doi:10.1002/1097-0061(200010)16:14 · Cited by 12 · see citing works
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Hartl, F. U., Bracher, A., & Hayer-Hartl, M. K. (2011) · Nature · doi:10.1038/nature10317 · Cited by 3,525 · see citing works
The amyloid state and its association with protein misfolding diseases.
Knowles, T. P. J., Vendruscolo, M., & Dobson, C. M. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3810 · Cited by 2,382 · see citing works
Huntington's disease: from molecular pathogenesis to clinical treatment
Ross, C. A., & Tabrizi, S. J. (2010) · The Lancet Neurology · doi:10.1016/s1474-4422(10)70245-3 · Cited by 1,751 · see citing works
The proteostasis network and its decline in ageing
Hipp, M. S., Kasturi, P., & Hartl, F. U. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0101-y · Cited by 1,642 · see citing works
Molecular Chaperone Functions in Protein Folding and Proteostasis
Kim, Y., Hipp, M. S., Bracher, A., Hayer-Hartl, M. K., & Hartl, F. U. (2013) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060208-092442 · Cited by 1,468 · see citing works
In vivo aspects of protein folding and quality control
Balchin, D., Hayer-Hartl, M. K., & Hartl, F. U. (2016) · Science · doi:10.1126/science.aac4354 · Cited by 1,432 · see citing works
Proteasomal and Autophagic Degradation Systems
Đikić, I. (2017) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-061516-044908 · Cited by 1,165 · see citing works
Biological and Chemical Approaches to Diseases of Proteostasis Deficiency
Powers, E. T., Morimoto, R. I., Dillin, A., Kelly, J. W., & Balch, W. E. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.052308.114844 · Cited by 1,149 · see citing works
Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing
Alberti, S., & Hyman, A. A. (2021) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-00326-6 · Cited by 1,135 · see citing works
Liu, W. J., Ye, L., Huang, W. F., Guo, L. J., Xu, Z. G., Wu, H. L., Yang, C., & Liu, H. F. (2016) · Cellular & Molecular Biology Letters · doi:10.1186/s11658-016-0031-z · Cited by 921 · see citing works
Cellular strategies for controlling protein aggregation
Tyedmers, J., Mogk, A., & Bukau, B. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2993 · Cited by 885 · see citing works
Pathways of cellular proteostasis in aging and disease
Klaips, C. L., Jayaraj, G. G., & Hartl, F. U. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201709072 · Cited by 803 · see citing works
Johnson, B. S., Snead, D., Lee, J. J., McCaffery, J. M., Shorter, J., & Gitler, A. D. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.010264 · Cited by 790 · see citing works
The N‐end rule pathway and regulation by proteolysis
Varshavsky, A. J. (2011) · Protein Science · doi:10.1002/pro.666 · Cited by 696 · see citing works
Exploring the sequence determinants of amyloid structure using position-specific scoring matrices
Maurer‐Stroh, S., Debulpaep, M., Kuemmerer, N., de la Paz, M. L., Martins, I. C., Reumers, J., Morris, K. L., Copland, A., Serpell, L. C., Serrano, L. G., et al. (2010) · Nature Methods · doi:10.1038/nmeth.1432 · Cited by 682 · see citing works
Protein misfolding in neurodegenerative diseases: Implications and strategies
Sweeney, P., Park, H., Baumann, M., Dunlop, J., Frydman, J., Kopito, R., McCampbell, A., Leblanc, G., Venkateswaran, A., Nurmi, A., et al. (2017) · Translational Neurodegeneration · doi:10.1186/s40035-017-0077-5 · Cited by 675 · see citing works
Self-citationProteostasis impairment in protein-misfolding and -aggregation diseases
Hipp, M. S., Park, S.-H., & Hartl, F. U. (2014) · Trends in Cell Biology · doi:10.1016/j.tcb.2014.05.003 · Cited by 656 · see citing works
Widespread protein aggregation as an inherent part of aging in C. elegans
David, D. C., Ollikainen, N., Trinidad, J. C., Cary, M. P., Burlingame, A. L., & Kenyon, C. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000450 · Cited by 627 · see citing works
Verghese, J., Abrams, J., Wang, Y., & Morano, K. A. (2012) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.05018-11 · Cited by 575 · see citing works
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Walther, D. M., Kasturi, P., Zheng, M., Pinkert, S., Vecchi, G., Ciryam, P., Morimoto, R. I., Dobson, C. M., Vendruscolo, M., Mann, M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.03.032 · Cited by 569 · see citing works
Kroschwald, S., Maharana, S., Matějů, D., Malinovska, L., Nüske, E., Poser, I., Richter, D., & Alberti, S. (2015) · eLife · doi:10.7554/elife.06807 · Cited by 545 · see citing works
Hetz, C., Thielen, P., Matus, S., Nassif, M., Court, F., Kiffin, R., Martinez, G., Cuervo, A. M., Brown, R. H., & Glimcher, L. H. (2009) · Genes & Development · doi:10.1101/gad.1830709 · Cited by 530 · see citing works
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Haigis, M. C., & Yankner, B. A. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.10.002 · Cited by 525 · see citing works
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Hartl, F. U. (2017) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-061516-044518 · Cited by 519 · see citing works
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Self-citationAmm, I., Sommer, T., & Wolf, D. H. (2013) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2013.06.031 · Cited by 493 · see citing works
Terman, A., Kurz, T., Navratil, M., Arriaga, E. A., & Brunk, U. T. (2010) · Antioxidants & Redox Signaling · doi:10.1089/ars.2009.2598 · Cited by 490 · see citing works
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Matějů, D., Franzmann, T. M., Patel, A., Kopach, A., Boczek, E. E., Maharana, S., Lee, H. O., Carra, S., Hyman, A. A., & Alberti, S. (2017) · The EMBO Journal · doi:10.15252/embj.201695957 · Cited by 480 · see citing works
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Liebman, S. W., & Chernoff, Y. O. (2012) · Genetics · doi:10.1534/genetics.111.137760 · Cited by 372 · see citing works
Sánchez‐Ruiz, J. M. (2010) · Biophysical Chemistry · doi:10.1016/j.bpc.2010.02.004 · Cited by 369 · see citing works
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Otzen, D. E., & Riek, R. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a033860 · Cited by 332 · see citing works
Lewy Body-like α-Synuclein Aggregates Resist Degradation and Impair Macroautophagy
Tanik, S. A., Schultheiss, C. E., Volpicelli-Daley, L. A., Brunden, K. R., & Lee, V. M. Y. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.457408 · Cited by 326 · see citing works
Escusa-Toret, S., Vonk, W. I. M., & Frydman, J. (2013) · Nature Cell Biology · doi:10.1038/ncb2838 · Cited by 321 · see citing works
Self-citationBolognesi, B., Lorenzo-Gotor, N., Dhar, R., Cirillo, D., Baldrighi, M., Tartaglia, G. G., & Lehner, B. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.05.076 · Cited by 318 · see citing works
Aneuploidy causes proteotoxic stress in yeastPreprint
Oromendia, A. B., Dodgson, S. E., & Amon, A. (2012) · Genes & Development · doi:10.1101/gad.207407.112 · Cited by 307 · see citing works
Oxidative stress, inflamm-aging and immunosenescence
Cannizzo, E. S., Clement, C. C., Sahu, R. K., Follo, C., & Santambrogio, L. (2011) · Journal of Proteomics · doi:10.1016/j.jprot.2011.06.005 · Cited by 303 · see citing works
Targeting proteins for degradation.
Schrader, E. K., Harstad, K. G., & Matouschek, A. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.250 · Cited by 287 · see citing works
Geiler‐Samerotte, K., Dion, M. F., Budnik, B., Wang, S. M., Hartl, D. L., & Drummond, D. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1017570108 · Cited by 285 · see citing works
Proteotoxicity and Cardiac Dysfunction — Alzheimer's Disease of the Heart?
Willis, M. S., & Patterson, C. (2013) · New England Journal of Medicine · doi:10.1056/nejmra1106180 · Cited by 282 · see citing works
Compartment‐specific aggregases direct distinct nuclear and cytoplasmic aggregate deposition
Miller, S. B. M., Ho, C., Winkler, J., Khokhrina, M., Neuner, A., Mohamed, M. Y. H., Guilbride, D. L., Richter, K., Lisby, M., Schiebel, E., et al. (2015) · The EMBO Journal · doi:10.15252/embj.201489524 · Cited by 278 · see citing works
Winkler, J., Seybert, A., König, L. M., Pruggnaller, S., Haselmann, U., Sourjik, V., Weiß, M., Frangakis, A. S., Mogk, A., & Bukau, B. (2010) · The EMBO Journal · doi:10.1038/emboj.2009.412 · Cited by 277 · see citing works
The Ribosome as a Hub for Protein Quality Control
Pechmann, S., Willmund, F., & Frydman, J. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.01.020 · Cited by 269 · see citing works
Self-citationMechanisms and Functions of Spatial Protein Quality Control
Sontag, E. M., Samant, R. S., & Frydman, J. (2017) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060815-014616 · Cited by 269 · see citing works
Self-citationScotter, E. L., Vance, C. A., Nishimura, A. L., Lee, Y., Chen, H.-J., Urwin, H., Sardone, V., Mitchell, J. C., Rogelj, B., Rubinsztein, D. C., et al. (2014) · Journal of Cell Science · doi:10.1242/jcs.140087 · Cited by 265 · see citing works
Specht, S., Miller, S. B. M., Mogk, A., & Bukau, B. (2011) · Journal of Cell Biology · doi:10.1083/jcb.201106037 · Cited by 254 · see citing works
Unconventional Secretion Mediates the Trans-cellular Spreading of Tau
Katsinelos, T., Zeitler, M., Dimou, E., Karakatsani, A., Müller, H., Nachman, E., Steringer, J. P., de Almodóvar, C. R., Nickel, W., & Jahn, T. R. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.04.056 · Cited by 252 · see citing works
Diversity in the origins of proteostasis networks — a driver for protein function in evolution
Powers, E. T., & Balch, W. E. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3542 · Cited by 247 · see citing works
Differential Scales of Protein Quality Control
Wolff, S., Weissman, J. S., & Dillin, A. G. (2014) · Cell · doi:10.1016/j.cell.2014.03.007 · Cited by 243 · see citing works
Walking the tightrope: proteostasis and neurodegenerative disease
Yerbury, J. J., Ooi, L., Dillin, A. G., Saunders, D. N., Hatters, D. M., Beart, P. M., Cashman, N. R., Wilson, M. R., & Ecroyd, H. W. (2016) · Journal of Neurochemistry · doi:10.1111/jnc.13575 · Cited by 243 · see citing works
Brodsky, J. L., & Skach, W. R. (2011) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2011.05.004 · Cited by 242 · see citing works
Aggregation of Therapeutic Proteins
Wang, W., & Roberts, C. J. (2010) · Wiley eBooks · doi:10.1002/9780470769829 · Cited by 234 · see citing works
Proteome complexity and the forces that drive proteome imbalance
Harper, J. W., & Bennett, E. J. (2016) · Nature · doi:10.1038/nature19947 · Cited by 234 · see citing works
Dynamic Regulation of the 26S Proteasome: From Synthesis to Degradation
Marshall, R. S., & Vierstra, R. D. (2019) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2019.00040 · Cited by 230 · see citing works
Oxidative Stress, Inflammaging, and Immunosenescence
Bauer, M. E., & la Fuente, M. D. (2013) · Elsevier eBooks · doi:10.1016/b978-0-12-397803-5.00004-6 · Cited by 229 · see citing works
Organelle-Based Aggregation and Retention of Damaged Proteins in Asymmetrically Dividing Cells
Zhou, C., Slaughter, B. D., Unruh, J. R., Guo, F., Yu, Z., Mickey, K., Narkar, A., Trimble, R., McClain, M. L., & Li, R. (2014) · Cell · doi:10.1016/j.cell.2014.09.026 · Cited by 228 · see citing works
Coordination of Translational Control and Protein Homeostasis during Severe Heat Stress
Cherkasov, V., Hofmann, S., Druffel‐Augustin, S., Mogk, A., Tyedmers, J., Stoecklin, G., & Bukau, B. (2013) · Current Biology · doi:10.1016/j.cub.2013.09.058 · Cited by 224 · see citing works
Malinovska, L., Kroschwald, S., Munder, M. C., Richter, D., & Alberti, S. (2012) · Molecular Biology of the Cell · doi:10.1091/mbc.e12-03-0194 · Cited by 221 · see citing works
Firefly luciferase mutants as sensors of proteome stress
Gupta, R., Kasturi, P., Bracher, A., Loew, C., Zheng, M., Villella, A., Garza, D., Hartl, F. U., & Raychaudhuri, S. (2011) · Nature Methods · doi:10.1038/nmeth.1697 · Cited by 219 · see citing works
Surveillance of Nuclear Pore Complex Assembly by ESCRT-III/Vps4
Webster, B. M., Colombi, P., Jäger, J., & Lusk, C. P. (2014) · Cell · doi:10.1016/j.cell.2014.09.012 · Cited by 219 · see citing works
Protein aggregation and degradation mechanisms in neurodegenerative diseases.
Takalo, M., Salminen, A., Soininen, H. S., Hiltunen, M. O., & Haapasalo, A. (2013) · Europe PMC (PubMed Central) · Cited by 219 · see citing works
The SND proteins constitute an alternative targeting route to the endoplasmic reticulum
Aviram, N., Ast, T., Boydston, E. A., Arakel, E. C., Chuartzman, S. G., Jan, C. H., Haßdenteufel, S., Dudek, J., Jung, M., Schorr, S., et al. (2016) · Nature · doi:10.1038/nature20169 · Cited by 211 · see citing works
Wang, J., Farr, G. W., Hall, D. H., Li, F., Furtak, K., Dreier, L., & Horwich, A. L. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000350 · Cited by 207 · see citing works
A novel single-cell screening platform reveals proteome plasticity during yeast stress responses
Breker, M., Gymrek, M., & Schuldiner, M. (2013) · The Journal of Cell Biology · doi:10.1083/jcb.201301120 · Cited by 205 · see citing works
Role for Lipid Droplet Biogenesis and Microlipophagy in Adaptation to Lipid Imbalance in Yeast
Vevea, J., Garcia, E. J., Chan, R., Zhou, B., Schultz, M., Paolo, G. D., McCaffery, J. M., & Pon, L. A. (2015) · Developmental Cell · doi:10.1016/j.devcel.2015.11.010 · Cited by 204 · see citing works
Ori, A., Toyama, B. H., Harris, M. S., Bock, T., Iskar, M., Bork, P., Ingolia, N. T., Hetzer, M. W., & Beck, M. (2015) · Cell Systems · doi:10.1016/j.cels.2015.08.012 · Cited by 201 · see citing works
Uchiki, T., Weikel, K. A., Jiao, W., Shang, F., Caceres, A., Pawlak, D., Handa, J. T., Brownlee, M., Nagaraj, R., & Taylor, A. (2012) · Aging Cell · doi:10.1111/j.1474-9726.2011.00752.x · Cited by 200 · see citing works
Budding yeast as a model organism to study the effects of age
Denoth‐Lippuner, A., Julou, T., & Barral, Y. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12060 · Cited by 200 · see citing works
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
Sung, M., Porras-Yakushi, T. R., Reitsma, J. M., Huber, F. M., Sweredoski, M. J., Hoelz, A., Hess, S. Y., & Deshaies, R. J. (2016) · eLife · doi:10.7554/elife.19105 · Cited by 195 · see citing works
A Network of Cytosolic Factors Targets SRP-Independent Proteins to the Endoplasmic Reticulum
Ast, T., Cohen, G., & Schuldiner, M. (2013) · Cell · doi:10.1016/j.cell.2013.02.003 · Cited by 193 · see citing works
Cell death: protein misfolding and neurodegenerative diseases
Nakamura, T., & Lipton, S. A. (2009) · APOPTOSIS · doi:10.1007/s10495-008-0301-y · Cited by 191 · see citing works
Spokoini, R., Moldavski, O., Nahmias, Y., England, J. L., Schuldiner, M., & Kaganovich, D. (2012) · Cell Reports · doi:10.1016/j.celrep.2012.08.024 · Cited by 191 · see citing works
Self-citationA thiol probe for measuring unfolded protein load and proteostasis in cells
Chen, M. Z., Moily, N. S., Bridgford, J. L., Wood, R. J., Radwan, M., Smith, T. A., Song, Z., Tang, B. Z., Tilley, L. M., Xu, X., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-00203-5 · Cited by 191 · see citing works
Spatially Organized Aggregation of Misfolded Proteins as Cellular Stress Defense Strategy
Miller, S. B. M., Mogk, A., & Bukau, B. (2015) · Journal of Molecular Biology · doi:10.1016/j.jmb.2015.02.006 · Cited by 188 · see citing works
Cellular Functions and Mechanisms of Action of Small Heat Shock Proteins
Mogk, A., Ruger-Herreros, C., & Bukau, B. (2019) · Annual Review of Microbiology · doi:10.1146/annurev-micro-020518-115515 · Cited by 187 · see citing works
Protein disorder, prion propensities, and self-organizing macromolecular collectives
Malinovska, L., Kroschwald, S., & Alberti, S. (2013) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2013.01.003 · Cited by 185 · see citing works
Ogrodnik, M., Salmonowicz, H., & Gladyshev, V. N. (2019) · Aging Cell · doi:10.1111/acel.12841 · Cited by 184 · see citing works
A ribosome assembly stress response regulates transcription to maintain proteome homeostasis
Albert, B., Kos‐Braun, I. C., Henras, A. K., Dez, C., Rueda-Mejia, M. P., Zhang, X., Gadal, O., Koš, M., & Shore, D. (2019) · eLife · doi:10.7554/elife.45002 · Cited by 180 · see citing works
Effects of in vivo conditions on amyloid aggregation
Owen, M. C., Gnutt, D., Gao, M., Wärmländer, S. K. T. S., Jarvet, J., Gräslund, A., Winter, R., Ebbinghaus, S., & Strodel, B. (2019) · Chemical Society Reviews · doi:10.1039/c8cs00034d · Cited by 179 · see citing works
Duennwald, M. L., Echeverria, A., & Shorter, J. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001346 · Cited by 178 · see citing works
Heat shock proteins as potential targets for protective strategies in neurodegeneration
Kampinga, H. H., & Bergink, S. (2016) · The Lancet Neurology · doi:10.1016/s1474-4422(16)00099-5 · Cited by 172 · see citing works
Distinct proteostasis circuits cooperate in nuclear and cytoplasmic protein quality control
Samant, R. S., Livingston, C. M., Sontag, E. M., & Frydman, J. (2018) · Nature · doi:10.1038/s41586-018-0678-x · Cited by 169 · see citing works
Self-citationSolís, E. J., Pandey, J. P., Zheng, X., Jin, D. X., Gupta, P. B., Airoldi, E. M., Pincus, D., & Denic, V. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.05.014 · Cited by 168 · see citing works
Extracellular Monomeric Tau Protein Is Sufficient to Initiate the Spread of Tau Protein Pathology
Michel, C. H., Kumar, S., Pinotsi, D., Tunnacliffe, A., St. George-Hyslop, P., Mandelkow, E., Mandelkow, E.-M., Kaminski, C. F., & Kaminski Schierle, G. S. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.515445 · Cited by 165 · see citing works
Hyttinen, J. M. T., Amadio, M., Viiri, J., Pascale, A., Salminen, A., & Kaarniranta, K. (2014) · Ageing Research Reviews · doi:10.1016/j.arr.2014.07.002 · Cited by 165 · see citing works
The role of oxidative and inflammatory stress and persistent viral infections in immunosenescence
Bauer, M. E., & la Fuente, M. D. (2016) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2016.01.001 · Cited by 164 · see citing works
Lifespan Control by Redox-Dependent Recruitment of Chaperones to Misfolded Proteins
Hanzén, S., Vielfort, K., Yang, J., Roger, F., Andersson, V., Zamarbide-Forés, S., Andersson, R., Malm, L., Palais, G., Biteau, B., et al. (2016) · Cell · doi:10.1016/j.cell.2016.05.006 · Cited by 161 · see citing works
The mutational landscape of a prion-like domain
Bolognesi, B., Faure, A. J., Seuma, M., Schmiedel, J. M., Tartaglia, G. G., & Lehner, B. (2019) · Nature Communications · doi:10.1038/s41467-019-12101-z · Cited by 159 · see citing works
- Authors
- Kaganovich, D., Kopito, R., & Frydman, J.
- Affiliations
- Stanford University (US)
- Corresponding author
- Frydman, Judith
- Venue
- Nature
- Published
- 2008-08
- Volume
- 454
- Issue
- 7208
- Pages
- 1088-1095
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC2746971
- OpenAlex
- W1967025628
- Cited by
- 932
- References
- 57
- Citations by year
- 2026: 24 · 2025: 29 · 2024: 41 · 2023: 47 · 2022: 40 · 2021: 52 · 2020: 55 · 2019: 53 · 2018: 54 · 2017: 76 · 2016: 74 · 2015: 65 · 2014: 71 · 2013: 59 · 2012: 58
- FWCI
- 18.36
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- ePrints Soton (University of Southampton) (submittedVersion)
- Funders
- National Institutes of Health
- National Institute of General Medical Sciences (R01GM056433)
- National Institute of Neurological Disorders and Stroke (R01NS042842)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Heat shock proteins research
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Keywords
- protein misfolding, protein quality control, ubiquitination, proteasome, protein aggregation, huntingtin, prion protein, autophagy, neurodegenerative diseases, yeast, mammalian cells
- MeSH terms
- Ubiquitin-Conjugating Enzyme UBC9, Cytosol, HeLa Cells, Humans, Prions, Proteins, Saccharomyces cerevisiae, Solubility, Protein Folding, Ubiquitin-Conjugating Enzymes, Proteasome Endopeptidase Complex, Von Hippel-Lindau Tumor Suppressor Protein, Ubiquitination
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