The DOI matches its Crossref record; 37 of the 38 references it cites were found in a registry or an index.
Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians
Abstract
A large family of cytotoxic cyclic peptides exemplified by the patellamides has been isolated from ascidians harboring the obligate cyanobacterial symbionts Prochloron spp.. Genome sequence analysis of these symbionts has revealed that Prochloron spp. synthesize patellamides by a ribosomal pathway. To understand how this pathway evolved to produce a suite of related metabolites, we analyzed 46 prochloron-containing ascidians from the tropical Pacific Ocean for the presence of patellamide biosynthetic genes and taxonomic markers. Here, we show that Prochloron spp. generate a diverse library of patellamides using small, hypervariable cassettes within a conserved genetic background. Each symbiont strain contains a single pathway, and mixtures of symbionts within ascidians lead to the accumulation of chemical libraries. We used this information to engineer the production of a new cyclic peptide in Escherichia coli, thereby demonstrating the power of comparative analysis of closely related symbiotic pathways to direct the genetic synthesis of new molecules.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Citations
Cites
Thompson, J. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.24.4876 · Cited by 38,685
Natural products as sources of new drugs over the period 1981–2002
Newman, D. J., Cragg, G. M., & Snader, K. M. (2003) · Journal of Natural Products · doi:10.1021/np030096l · Cited by 3,082
BIOLOGY OF BACTERIOCYTE-ASSOCIATED ENDOSYMBIONTS OF PLANT SAP-SUCKING INSECTS
Baumann, P. (2005) · Annual Review of Microbiology · doi:10.1146/annurev.micro.59.030804.121041 · Cited by 1,060
Ubiquitin-mediated proteolysis: biological regulation via destruction
Ciechanover, A. J., Orian, A., & Schwartz, A. L. (2000) · BioEssays · doi:10.1002/(sici)1521-1878(200005)22:5 · Cited by 848
Pathogenic fungus harbours endosymbiotic bacteria for toxin production
Partida‐Martínez, L. P., & Hertweck, C. (2005) · Nature · doi:10.1038/nature03997 · Cited by 702
Piel, J. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.222481399 · Cited by 609
Schmidt, E. W., Nelson, J. T., Rasko, D. A., Sudek, S., Eisen, J. A., Haygood, M. G., & Ravel, J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0501424102 · Cited by 567
Self-citationReconstructing immune phylogeny: new perspectives
Litman, G. W., Cannon, J. P., & Dishaw, L. J. (2005) · Nature reviews. Immunology · doi:10.1038/nri1712 · Cited by 352
Duda, T. F., & Palumbi, S. R. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.12.6820 · Cited by 335
Schmidt, E. W., Obraztsova, A., Davidson, S. K., Faulkner, D. J., & Haygood, M. G. (2000) · Marine Biology · doi:10.1007/s002270000273 · Cited by 264
Self-citation
Flagged first, then by citations
1 of the 38 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Arnison, P. G., Bibb, M. J., Bierbaum, G., Bowers, A. A., Bugni, T. S., Bulaj, G. W., Camarero, J. A., Campopiano, D. J., Challis, G. L., Clardy, J., et al. (2012) · Natural Product Reports · doi:10.1039/c2np20085f · Cited by 2,113
Self-citationAdding New Chemistries to the Genetic Code
Liu, C. C., & Schultz, P. G. (2010) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.052308.105824 · Cited by 1,725
Sponge-Associated Microorganisms: Evolution, Ecology, and Biotechnological Potential
Taylor, M. W., Radax, R., Steger, D., & Wagner, M. (2007) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00040-06 · Cited by 1,493
Biosynthesis and Mode of Action of Lantibiotics
Chatterjee, C., Paul, M., Xie, L., & van der Donk, W. A. (2005) · Chemical Reviews · doi:10.1021/cr030105v · Cited by 740
The evolution of genome mining in microbes – a review
Ziemert, N., Alanjary, M. M., & Weber, T. (2016) · Natural Product Reports · doi:10.1039/c6np00025h · Cited by 726
Metabolites from symbiotic bacteria
Piel, J. (2008) · Natural Product Reports · doi:10.1039/b703499g · Cited by 579
Marine Natural Products: A Source of Novel Anticancer Drugs
Khalifa, S. A. M., Elias, N., Farag, M. A., Chen, L., Saeed, A., Hegazy, M.-E. F., Moustafa, M. S., Abd El-Wahed, A., Al-Mousawi, S. M., Musharraf, S. G., et al. (2019) · Marine Drugs · doi:10.3390/md17090491 · Cited by 555
Bioactive natural products from marine cyanobacteria for drug discovery
Tan, L. T. (2007) · Phytochemistry · doi:10.1016/j.phytochem.2007.01.012 · Cited by 534
Paul, V. J., & Ritson‐Williams, R. (2008) · Natural Product Reports · doi:10.1039/b702742g · Cited by 519
Synthetic biology to access and expand nature's chemical diversity
Smanski, M. J., Zhou, H. L., Claesen, J., Shen, B., Fischbach, M. A., & Voigt, C. A. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2015.24 · Cited by 487
Biosynthesis of polyketides by trans-AT polyketide synthases
Helfrich, E. J. N., & Piel, J. (2015) · Natural Product Reports · doi:10.1039/c5np00125k · Cited by 490
Natural Products Version 2.0: Connecting Genes to Molecules
Walsh, C. T., & Fischbach, M. A. (2010) · Journal of the American Chemical Society · doi:10.1021/ja909118a · Cited by 468
Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms
Flórez, L. V., Biedermann, P. H. W., Engl, T., & Kaltenpoth, M. (2015) · Natural Product Reports · doi:10.1039/c5np00010f · Cited by 422
Follow the leader: the use of leader peptides to guide natural product biosynthesis
Oman, T. J., & van der Donk, W. A. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.286 · Cited by 405
Nguyen, T., Ishida, K., Jenke‐Kodama, H., Dittmann, E., Gurgui, C., Hochmuth, T., Taudien, S., Platzer, M., Hertweck, C., & Piel, J. (2008) · Nature Biotechnology · doi:10.1038/nbt1379 · Cited by 389
Natural Product Biosynthetic Diversity and Comparative Genomics of the Cyanobacteria
Dittmann, E., Gugger, M. F., Sivonen, K., & Fewer, D. P. (2015) · Trends in Microbiology · doi:10.1016/j.tim.2015.07.008 · Cited by 326
The evolution of gene collectives: How natural selection drives chemical innovation
Fischbach, M. A., Walsh, C. T., & Clardy, J. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0709132105 · Cited by 309
A global assembly line for cyanobactins
Donia, M. S., Ravel, J., & Schmidt, E. W. (2008) · Nature Chemical Biology · doi:10.1038/nchembio.84 · Cited by 279
Self-citationCyanobactins—ribosomal cyclic peptides produced by cyanobacteria
Sivonen, K., Leikoski, N., Fewer, D. P., & Jokela, J. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-010-2482-x · Cited by 275
Ли, Б., Sher, D., Kelly, L., Shi, Y., Huang, K. H., Knerr, P. J., Joewono, I., Rusch, D. B., Chisholm, S. W., & van der Donk, W. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0913677107 · Cited by 272
Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds
McIntosh, J. A., Donia, M. S., & Schmidt, E. W. (2009) · Natural Product Reports · doi:10.1039/b714132g · Cited by 273
Self-citationNatural products as a screening resource
Harvey, A. L. (2007) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2007.08.012 · Cited by 224
YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function
Burkhart, B. J., Schwalen, C. J., Mann, G., Naismith, J. H., & Mitchell, D. A. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00623 · Cited by 207
Linington, R. G., González, J., Ureña, L.-D., Romero, L. I., Ortega‐Barría, E., & Gerwick, W. H. (2007) · Journal of Natural Products · doi:10.1021/np0605790 · Cited by 195
Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting
Fisch, K. M., Gurgui, C., Heycke, N., van der Sar, S. A., Anderson, S. A., Webb, V. L., Taudien, S., Platzer, M., Rubio, B. K., Robinson, S. J., et al. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.176 · Cited by 193
Nature loves nitrogen heterocycles
Walsh, C. T. (2014) · Tetrahedron Letters · doi:10.1016/j.tetlet.2014.11.046 · Cited by 188
Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin
Brown, L. C. W., Acker, M. G., Clardy, J., Walsh, C. T., & Fischbach, M. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0900008106 · Cited by 187
Bacterial Biosynthesis and Maturation of the Didemnin Anti-cancer Agents
Xu, Y., Kersten, R. D., Nam, S., Lu, L., Al-Suwailem, A. M., Zheng, H., Fenical, W., Dorrestein, P. C., Moore, B. S., & Qian, P. (2012) · Journal of the American Chemical Society · doi:10.1021/ja301735a · Cited by 185
Structural analysis of leader peptide binding enables leader-free cyanobactin processing
Koehnke, J., Mann, G., Bent, A. F., Ludewig, H., Shirran, S. L., Botting, C. H., Lébl, T., Houssen, W. E., Jaspars, M., & Naismith, J. H. (2015) · Nature Chemical Biology · doi:10.1038/nchembio.1841 · Cited by 184
Genome mining for ribosomally synthesized natural products
Velásquez, J. E., & van der Donk, W. A. (2010) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2010.10.027 · Cited by 182
Liao, R., Duan, L., Lei, C., Pan, H., Ding, Y., Zhang, Q., Chen, D., Shen, B., Yu, Y., & Liu, W. (2009) · Chemistry & Biology · doi:10.1016/j.chembiol.2009.01.007 · Cited by 181
Thiazole/oxazole-modified microcins: complex natural products from ribosomal templates
Melby, J. O., Nard, N. J., & Mitchell, D. A. (2011) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2011.02.027 · Cited by 180
Biological targets and mechanisms of action of natural products from marine cyanobacteria
Salvador‐Reyes, L. A., & Luesch, H. (2015) · Natural Product Reports · doi:10.1039/c4np00104d · Cited by 168
Haft, D. H., Basu, M. K., & Mitchell, D. A. (2010) · BMC Biology · doi:10.1186/1741-7007-8-70 · Cited by 167
New anticancer agents: recent developments in tumor therapy.
Ali, R., Mirza, Z., Ashraf, G. M., Kamal, M. A., Ansari, S. A., Damanhouri, G. A., Abuzenadah, A. M., Chaudhary, A. G., & SHEIKH, I. A. (2012) · PubMed · Cited by 162
Recent Advances in the Discovery and Development of Marine Microbial Natural Products
Xiong, Z., Wang, J.-F., Hao, Y.-Y., & Wang, Y. (2013) · Marine Drugs · doi:10.3390/md11030700 · Cited by 159
Mazard, S., Penesyan, A., Ostrowski, M. D., Paulsen, I. T., & Egan, S. (2016) · Marine Drugs · doi:10.3390/md14050097 · Cited by 170
Streptolysin S-like virulence factors: the continuing sagA
Molloy, E. M., Cotter, P. D., Hill, C., Mitchell, D. A., & Ross, R. P. (2011) · Nature Reviews Microbiology · doi:10.1038/nrmicro2624 · Cited by 160
Bacterial symbionts and natural products
Crawford, J. M., & Clardy, J. (2011) · Chemical Communications · doi:10.1039/c1cc11574j · Cited by 152
Complex microbiome underlying secondary and primary metabolism in the tunicate- Prochloron symbiosis
Donia, M. S., Fricke, W. F., Partensky, F., Cox, J. E., Elshahawi, S. I., White, J. R., Phillippy, A. M., Schatz, M. C., Piel, J., Haygood, M. G., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1111712108 · Cited by 151
Self-citationScharf, D. H., Remme, N., Heinekamp, T., Hortschansky, P., Brakhage, A. A., & Hertweck, C. (2010) · Journal of the American Chemical Society · doi:10.1021/ja103262m · Cited by 149
Wilson, M. C., & Piel, J. (2013) · Chemistry & Biology · doi:10.1016/j.chembiol.2013.04.011 · Cited by 149
Koehnke, J., Bent, A., Houssen, W. E., Zollman, D., Morawitz, F., Shirran, S. L., Vendôme, J., Nneoyi-Egbe, A. F., Trembleau, L., Botting, C. H., et al. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2340 · Cited by 147
Diverse backbone-cyclized peptides via codon reprogramming
Kawakami, T., Ohta, A., Ohuchi, M., Ashigai, H., Murakami, H., & Suga, H. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.259 · Cited by 142
Genome streamlining and chemical defense in a coral reef symbiosis
Kwan, J. C., Donia, M. S., Han, A., Hirose, E., Haygood, M. G., & Schmidt, E. W. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1213820109 · Cited by 144
Self-citationLee, J., McIntosh, J. A., Hathaway, B. J., & Schmidt, E. W. (2009) · Journal of the American Chemical Society · doi:10.1021/ja8092168 · Cited by 140
Self-citationEnzymatic Basis of Ribosomal Peptide Prenylation in Cyanobacteria
McIntosh, J. A., Donia, M. S., Nair, S. K., & Schmidt, E. W. (2011) · Journal of the American Chemical Society · doi:10.1021/ja205458h · Cited by 137
Self-citationNatural products chemistry: The emerging trends and prospective goals
Khan, R. (2018) · Saudi Pharmaceutical Journal · doi:10.1016/j.jsps.2018.02.015 · Cited by 135
Chasing the treasures of the sea — bacterial marine natural products
Gulder, T. A. M., & Moore, B. S. (2009) · Current Opinion in Microbiology · doi:10.1016/j.mib.2009.05.002 · Cited by 137
Portmann, C., Blom, J. F., Gademann, K., & Jüttner, F. (2008) · Journal of Natural Products · doi:10.1021/np800118g · Cited by 134
Portmann, C., Blom, J. F., Kaiser, M., Brun, R., Jüttner, F., & Gademann, K. (2008) · Journal of Natural Products · doi:10.1021/np800409z · Cited by 132
Leikoski, N., Liu, L., Jokela, J., Wahlsten, M., Gugger, M. F., Calteau, A., Permi, P., Kerfeld, C. A., Sivonen, K., & Fewer, D. P. (2013) · Chemistry & Biology · doi:10.1016/j.chembiol.2013.06.015 · Cited by 129
Banik, J. J., & Brady, S. F. (2010) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.08.012 · Cited by 126
Metagenomic approaches to natural products from free-living and symbiotic organisms
Brady, S. F., Simmons, L., Kim, J. H., & Schmidt, E. W. (2009) · Natural Product Reports · doi:10.1039/b817078a · Cited by 125
Self-citationPalanisamy, S. K., Rajendran, N. M., & Marino, A. (2017) · Natural Products and Bioprospecting · doi:10.1007/s13659-016-0115-5 · Cited by 131
Ribosomal Route to Small-Molecule Diversity
Tianero, M. D. B., Donia, M. S., Young, T. S., Schultz, P. G., & Schmidt, E. W. (2011) · Journal of the American Chemical Society · doi:10.1021/ja208278k · Cited by 123
Self-citationLinking Chemistry and Genetics in the Growing Cyanobactin Natural Products Family
Donia, M. S., & Schmidt, E. W. (2011) · Chemistry & Biology · doi:10.1016/j.chembiol.2011.01.019 · Cited by 123
Self-citationZiemert, N., Ishida, K., Quillardet, P., Bouchier, C., Hertweck, C., de Marsac, N. T., & Dittmann, E. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02392-07 · Cited by 121
Chimeric Leader Peptides for the Generation of Non-Natural Hybrid RiPP Products
Burkhart, B. J., Kakkar, N., Hudson, G. A., van der Donk, W. A., & Mitchell, D. A. (2017) · ACS Central Science · doi:10.1021/acscentsci.7b00141 · Cited by 121
Jones, A. C., Monroe, E. A., Eisman, E. B., Gerwick, L. G., Sherman, D. H., & Gerwick, W. H. (2010) · Natural Product Reports · doi:10.1039/c000535e · Cited by 121
Yang, X., & van der Donk, W. A. (2013) · Chemistry - A European Journal · doi:10.1002/chem.201300401 · Cited by 125
A sea of biosynthesis: marine natural products meet the molecular age
Lane, A. L., & Moore, B. S. (2010) · Natural Product Reports · doi:10.1039/c0np90032j · Cited by 119
Piel, J. (2010) · Annual Review of Microbiology · doi:10.1146/annurev-micro-090110-102805 · Cited by 120
The Natural Products Chemistry of Cyanobacteria
Tidgewell, K. J., Clark, B. R., & Gerwick, W. H. (2010) · Elsevier eBooks · doi:10.1016/b978-008045382-8.00041-1 · Cited by 117
Peptide Macrocyclization Catalyzed by a Prolyl Oligopeptidase Involved in α-Amanitin Biosynthesis
Luo, H., Hong, S.-Y., Sgambelluri, R. M., Angelos, E. R., Li, X., & Walton, J. D. (2014) · Chemistry & Biology · doi:10.1016/j.chembiol.2014.10.015 · Cited by 113
Bowers, A. A., Acker, M. G., Koglin, A., & Walsh, C. T. (2010) · Journal of the American Chemical Society · doi:10.1021/ja102339q · Cited by 111
Goto, Y., Ito, Y., Kato, Y., Tsunoda, S., & Suga, H. (2014) · Chemistry & Biology · doi:10.1016/j.chembiol.2014.04.008 · Cited by 110
Ding, W., Liu, W., Jia, Y., Li, Y., van der Donk, W. A., & Zhang, Q. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1522907113 · Cited by 109
Cyanobacteria as photoautotrophic biofactories of high-value chemicals
Noreña-Caro, D., & Benton, M. G. (2018) · Journal of CO2 Utilization · doi:10.1016/j.jcou.2018.10.008 · Cited by 117
A microbial factory for defensive kahalalides in a tripartite marine symbiosis
Zan, J., Li, Z., Tianero, M. D. B., Davis, J., Hill, R. T., & Donia, M. S. (2019) · Science · doi:10.1126/science.aaw6732 · Cited by 107
Self-citationNew tricks from ancient algae: natural products biosynthesis in marine cyanobacteria
Jones, A. C., Gu, L., Sorrels, C. M., Sherman, D. H., & Gerwick, W. H. (2009) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2009.02.019 · Cited by 107
How Nature Morphs Peptide Scaffolds into Antibiotics
Nolan, E. M., & Walsh, C. T. (2008) · ChemBioChem · doi:10.1002/cbic.200800438 · Cited by 106
Marine Invertebrate Metabolites with Anticancer Activities: Solutions to the “Supply Problem”
Gomes, N. G. M., Dasari, R., Chandra, S., Robert Kiss, A., & Kornienko, A. (2016) · Marine Drugs · doi:10.3390/md14050098 · Cited by 109
Trading molecules and tracking targets in symbiotic interactions
Schmidt, E. W. (2008) · Nature Chemical Biology · doi:10.1038/nchembio.101 · Cited by 101
Self-citationCircular Logic: Nonribosomal Peptide-like Macrocyclization with a Ribosomal Peptide Catalyst
McIntosh, J. A., Robertson, C. R., Agarwal, V., Nair, S. K., Bulaj, G. W., & Schmidt, E. W. (2010) · Journal of the American Chemical Society · doi:10.1021/ja1067806 · Cited by 100
Self-citationWalsh, C. T., Acker, M. G., & Bowers, A. A. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.r110.135970 · Cited by 97
Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis
Dunbar, K. L., Chekan, J. R., Cox, C. L., Burkhart, B. J., Nair, S. K., & Mitchell, D. A. (2014) · Nature Chemical Biology · doi:10.1038/nchembio.1608 · Cited by 93
Mollamides B and C, Cyclic Hexapeptides from the Indonesian Tunicate Didemnum molle
Donia, M. S., Wang, B., Dunbar, D. C., Desai, P. V., Patny, A., Avery, M. A., & Hamann, M. T. (2008) · Journal of Natural Products · doi:10.1021/np700718p · Cited by 93
Self-citationAn Engineered Lantibiotic Synthetase That Does Not Require a Leader Peptide on Its Substrate
Oman, T. J., Knerr, P. J., Bindman, N. A., Velásquez, J. E., & van der Donk, W. A. (2012) · Journal of the American Chemical Society · doi:10.1021/ja3017297 · Cited by 92
Assessing the Combinatorial Potential of the RiPP Cyanobactin tru Pathway
Ruffner, D. E., Schmidt, E. W., & Heemstra, J. R. J. (2014) · ACS Synthetic Biology · doi:10.1021/sb500267d · Cited by 92
Self-citationAcker, M. G., Bowers, A. A., & Walsh, C. T. (2009) · Journal of the American Chemical Society · doi:10.1021/ja908777t · Cited by 91
Naturally occurring circular proteins: distribution, biosynthesis and evolution
Cascales, L., & Craik, D. J. (2010) · Organic & Biomolecular Chemistry · doi:10.1039/c0ob00139b · Cited by 93
Species specificity of symbiosis and secondary metabolism in ascidians
Tianero, M. D. B., Kwan, J. C., Wyche, T. P., Presson, A. P., Koch, M., Barrows, L. R., Bugni, T. S., & Schmidt, E. W. (2014) · The ISME Journal · doi:10.1038/ismej.2014.152 · Cited by 89
Self-citationEmerging evolutionary paradigms in antibiotic discovery
Chevrette, M. G., & Currie, C. R. (2018) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-018-2085-6 · Cited by 94
Mutalipassi, M., Riccio, G., Mazzella, V., Galasso, C., Somma, E., Chiarore, A., de Pascale, D., & Zupo, V. (2021) · Marine Drugs · doi:10.3390/md19040227 · Cited by 97
Cyanobactins from Cyanobacteria: Current Genetic and Chemical State of Knowledge
Martins, J., & Vasconcelos, V. M. (2015) · Marine Drugs · doi:10.3390/md13116910 · Cited by 88
Recognition Sequences and Substrate Evolution in Cyanobactin Biosynthesis
Sardar, D., Pierce, E., McIntosh, J. A., & Schmidt, E. W. (2014) · ACS Synthetic Biology · doi:10.1021/sb500019b · Cited by 86
Self-citationHighly Diverse Cyanobactins in Strains of the Genus Anabaena
Leikoski, N., Fewer, D. P., Jokela, J., Wahlsten, M., Rouhiainen, L., & Sivonen, K. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01061-09 · Cited by 86
Modularity of RiPP Enzymes Enables Designed Synthesis of Decorated Peptides
Sardar, D., Lin, Z., & Schmidt, E. W. (2015) · Chemistry & Biology · doi:10.1016/j.chembiol.2015.06.014 · Cited by 81
Self-citationOrigin and Variation of Tunicate Secondary Metabolites
Schmidt, E. W., Donia, M. S., McIntosh, J. A., Fricke, W. F., & Ravel, J. (2012) · Journal of Natural Products · doi:10.1021/np200665k · Cited by 81
Self-citationLife in cellulose houses: symbiotic bacterial biosynthesis of ascidian drugs and drug leads
Schmidt, E. W., & Donia, M. S. (2010) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2010.10.006 · Cited by 80
Self-citationInsights into Heterocyclization from Two Highly Similar Enzymes
McIntosh, J. A., Donia, M. S., & Schmidt, E. W. (2010) · Journal of the American Chemical Society · doi:10.1021/ja9107116 · Cited by 80
Self-citationMarine Molecular Machines: Heterocyclization in Cyanobactin Biosynthesis
McIntosh, J. A., & Schmidt, E. W. (2010) · ChemBioChem · doi:10.1002/cbic.201000196 · Cited by 78
Self-citationSteric complementarity directs sequence promiscuous leader binding in RiPP biosynthesis
Chekan, J. R., Ongpipattanakul, C., & Nair, S. K. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1908364116 · Cited by 75
Parallel lives of symbionts and hosts: chemical mutualism in marine animals
Morita, M., & Schmidt, E. W. (2018) · Natural Product Reports · doi:10.1039/c7np00053g · Cited by 73
Self-citationOrigins and Bioactivities of Natural Compounds Derived from Marine Ascidians and Their Symbionts
Dou, X., & Dong, B. (2019) · Marine Drugs · doi:10.3390/md17120670 · Cited by 72
A Unique Tryptophan C‐Prenyltransferase from the Kawaguchipeptin Biosynthetic Pathway
Parajuli, A., Kwak, D. H., Dalponte, L., Leikoski, N., Galica, T., Umeobika, U., Trembleau, L., Bent, A., Sivonen, K., Wahlsten, M., et al. (2016) · Angewandte Chemie International Edition · doi:10.1002/anie.201509920 · Cited by 72
Total Structure Determination of Grassypeptolide, a New Marine Cyanobacterial Cytotoxin
Kwan, J. C., Rocca, J. R., Abboud, K. A., Paul, V. J., & Luesch, H. (2008) · Organic Letters · doi:10.1021/ol702946d · Cited by 72
Molecular basis for the broad substrate selectivity of a peptide prenyltransferase
Hao, Y., Pierce, E., Roe, D. R., Morita, M., McIntosh, J. A., Agarwal, V., Cheatham, T. E., Schmidt, E. W., & Nair, S. K. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1609869113 · Cited by 71
Self-citationEvolutionary radiation of lanthipeptides in marine cyanobacteria
Cubillos-Ruiz, A., Berta-Thompson, J. W., Becker, J. W., van der Donk, W. A., & Chisholm, S. W. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1700990114 · Cited by 71
Metadata
- Authors
- Donia, M. S., Hathaway, B. J., Sudek, S., Haygood, M. G., Rosovitz, M. J., Ravel, J., & Schmidt, E. W.
- Affiliations
- University of Utah (US)
- Scripps Institution of Oceanography (US)
- Oregon Health & Science University (US)
- J. Craig Venter Institute (US)
- Corresponding author
- Schmidt, Eric W
- Venue
- Nature Chemical Biology
- Published
- 2006-11-05
- Volume
- 2
- Issue
- 12
- Pages
- 729-735
- ISSN
- 1552-4450 (ISSN-L)
- OpenAlex
- W2006378794
- Cited by
- 261
- References
- 38
- Citations by year
- 2026: 3 · 2025: 4 · 2024: 4 · 2023: 5 · 2022: 8 · 2021: 8 · 2020: 9 · 2019: 13 · 2018: 15 · 2017: 10 · 2016: 17 · 2015: 20 · 2014: 19 · 2013: 15 · 2012: 20
- FWCI
- 9.61
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Nature Chemical Biology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- University of California, San Diego
- National Institute of General Medical Sciences (R01GM071425)
- Topics
- Life Sciences › Immunology and Microbiology › Applied Microbiology and Biotechnology › Microbial Natural Products and Biosynthesis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biotechnology › Marine Sponges and Natural Products
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Synthesis and Analysis
- Keywords
- Prochloron, cyanobacterial symbionts, marine ascidian, ribosomal peptide synthesis, combinatorial peptide libraries, biosynthetic gene clusters
- MeSH terms
- Cyanobacteria, Amino Acid Sequence, Animals, Base Sequence, DNA, Bacterial, Molecular Sequence Data, Symbiosis, Urochordata, Peptide Library, Combinatorial Chemistry Techniques
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review