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Widespread seasonal gene expression reveals annual differences in human immunity and physiology

Dopico, Xaquin Castro, Evangelou, Marina, Ferreira, Ricardo C., Guo, Hui, Pekalski, Marcin L., Smyth, Deborah J., Cooper, Nicholas, Burren, Oliver S., Fulford, Anthony J., Hennig, Branwen J., Prentice, Andrew M., Ziegler, Anette-G., Bonifacio, Ezio, Wallace, Chris, Todd, John A.·2015·Nature Communications

Abstract

Seasonal variations are rarely considered a contributing component to human tissue function or health, although many diseases and physiological process display annual periodicities. Here we find more than 4,000 protein-coding mRNAs in white blood cells and adipose tissue to have seasonal expression profiles, with inverted patterns observed between Europe and Oceania. We also find the cellular composition of blood to vary by season, and these changes, which differ between the United Kingdom and The Gambia, could explain the gene expression periodicity. With regards to tissue function, the immune system has a profound pro-inflammatory transcriptomic profile during European winter, with increased levels of soluble IL-6 receptor and C-reactive protein, risk biomarkers for cardiovascular, psychiatric and autoimmune diseases that have peak incidences in winter. Circannual rhythms thus require further exploration as contributors to various aspects of human physiology and disease.

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  • More than 4000 protein coding mRNAs within adipose tissue and white blood cells show seasonally derived expression profiles that differ between the Northern and Southern hemispheres, with implications for immunity and physiology.

    “more than 4000 protein coding mRNAs within adipose tissue and white blood cells show seasonally derived expression profiles that are different between the Northern and Southern hemisphere with implications for immunity and physiology”

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Research works printed but not linked: 58

  1. Kohler, M., Marin-Moratalla, N., Jordana, X. & Aanes, R. Seasonal bone growth and physiology in endotherms shed light on dinosaur physiology. Nature 487, 358–361 (2012). · DOI
  2. Yanovsky, M. J. & Kay, S. A. Molecular basis of seasonal time measurement in Arabidopsis. Nature 419, 308–312 (2002). · DOI
  3. Ebling, F. J. On the value of seasonal mammals for identifying mechanisms underlying the control of food intake and body weight. Horm. Behav. 66, 56–65 (2014). · DOI
  4. Afifi, A., Mohamed, E. R. & Ridi, R. E. Seasonal conditions determine the manner of skin rejection in reptiles. J. Exp. Zool. 265, 459–468 (1993). · DOI
  5. Mendoza, S. P., Lowe, E. L., Resko, J. A. & Levine, S. Seasonal variations in gonadal hormones and social behavior in squirrel monkeys. Physiol. Behav. 20, 515–522 (1978). · DOI
  6. Pell, J. P. & Cobbe, S. M. Seasonal variations in coronary heart disease. QJM 92, 689–696 (1999). · DOI
  7. Pell, J. P., Sirel, J., Marsden, A. K. & Cobbe, S. M. Seasonal variations in out of hospital cardiopulmonary arrest. Heart 82, 680–683 (1999). · DOI
  8. Iikuni, N. et al. What's in season for rheumatoid arthritis patients? Seasonal fluctuations in disease activity. Rheumatology 46, 846–848 (2007). · DOI
  9. Moltchanova, E. V., Schreier, N., Lammi, N. & Karvonen, M. Seasonal variation of diagnosis of Type 1 diabetes mellitus in children worldwide. Diabet. Med. 26, 673–678 (2009). · DOI · Paper page
  10. Rosenthal, N. E. et al. Seasonal affective disorder. A description of the syndrome and preliminary findings with light therapy. Arch. Gen. Psychiatry 41, 72–80 (1984). · DOI · Paper page
  11. Owens, N. & McGorry, P. D. Seasonality of symptom onset in first-episode schizophrenia. Psychol. Med. 33, 163–167 (2003). · DOI
  12. Watson, C. G., Kucala, T., Tilleskjor, C. & Jacobs, L. Schizophrenic birth seasonality in relation to the incidence of infectious diseases and temperature extremes. Arch. Gen. Psychiatry 41, 85–90 (1984). · DOI
  13. Fisman, D. N. Seasonality of infectious diseases. Annu. Rev. Public Health 28, 127–143 (2007). · DOI
  14. Dowell, S. F. Seasonal variation in host susceptibility and cycles of certain infectious diseases. Emerg. Infect. Dis. 7, 369–374 (2001). · DOI
  15. Kasahara, A. K., Singh, R. J. & Noymer, A. Vitamin D (25OHD) serum seasonality in the United States. PloS ONE 8, e65785 (2013). · DOI
  16. Bunger, M. K. et al. Mop3 is an essential component of the master circadian pacemaker in mammals. Cell 103, 1009–1017 (2000). · DOI · Paper page
  17. Harmer, S. L. et al. Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290, 2110–2113 (2000). · DOI · Paper page
  18. Dibner, C., Schibler, U. & Albrecht, U. The mammalian circadian timing system: organization and coordination of central and peripheral clocks. Annu. Rev. Physiol. 72, 517–549 (2010). · DOI · Paper page
  19. Azzi, A. et al. Circadian behavior is light-reprogrammed by plastic DNA methylation. Nat. Neurosci. 17, 377–382 (2014). · DOI
  20. Zhang, R., Lahens, N. F., Ballance, H. I., Hughes, M. E. & Hogenesch, J. B. A circadian gene expression atlas in mammals: Implications for biology and medicine. Proc. Natl Acad. Sci.USA 111, 16219–16224 (2014). · DOI · Paper page
  21. Shackelford, P. G. & Feigin, R. D. Periodicity of susceptibility to pneumococcal infection: influence of light and adrenocortical secretions. Science 182, 285–287 (1973). · DOI
  22. Curtis, A. M., Bellet, M. M., Sassone-Corsi, P. & O'Neill, L. A. Circadian clock proteins and immunity. Immunity 40, 178–186 (2014). · DOI
  23. Silver, A. C., Arjona, A., Walker, W. E. & Fikrig, E. The circadian clock controls toll-like receptor 9-mediated innate and adaptive immunity. Immunity 36, 251–261 (2012). · DOI
  24. Storch, K. F. et al. Extensive and divergent circadian gene expression in liver and heart. Nature 417, 78–83 (2002). · DOI
  25. Nguyen, K. D. et al. Circadian gene Bmal1 regulates diurnal oscillations of Ly6C(hi) inflammatory monocytes. Science 341, 1483–1488 (2013). · DOI
  26. Beyerlein, A., Wehweck, F., Ziegler, A. G. & Pflueger, M. Respiratory infections in early life and the development of islet autoimmunity in children at increased type 1 diabetes risk: evidence from the BABYDIET Study. JAMA Pediatr. 167, 800–807 (2013). · DOI
  27. Unsal-Kacmaz, K., Mullen, T. E., Kaufmann, W. K. & Sancar, A. Coupling of human circadian and cell cycles by the timeless protein. Mol.Cell Biol. 25, 3109–3116 (2005). · DOI · Paper page
  28. Yu, X. et al. TH17 cell differentiation is regulated by the circadian clock. Science 342, 727–730 (2013). · DOI
  29. Bjornsdottir, U. S. et al. Pathways activated during human asthma exacerbation as revealed by gene expression patterns in blood. PloS ONE 6, e21902 (2011). · DOI
  30. Ferreira, R. C. et al. A type I interferon transcriptional signature precedes autoimmunity in children genetically at-risk of type 1 diabetes. Diabetes 63, 2538–2550 (2014). · DOI
  31. Bronson, F. H. Are humans seasonally photoperiodic? J. Biol. Rhythms 19, 180–192 (2004). · DOI
  32. Creekmore, A. L., Ziegler, Y. S., Boney, J. L. & Nardulli, A. M. Estrogen receptor alpha regulates expression of the breast cancer 1 associated ring domain 1 (BARD1) gene through intronic DNA sequence. Mol.Cell Endocrinol. 267, 106–115 (2007). · DOI
  33. Abbas, A. R., Wolslegel, K., Seshasayee, D., Modrusan, Z. & Clark, H. F. Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus. PLoS ONE 4, e6098 (2009). · DOI
  34. De Jong, S. et al. Seasonal changes in gene expression represent cell-type composition in whole blood. Hum. Mol. Genet. 23, 2721–2728 (2014). · DOI
  35. Moore, S. E. et al. Effect of month of vaccine administration on antibody responses in The Gambia and Pakistan. Trop. Med. Int. Health 11, 1529–1541 (2006). · DOI
  36. Schenker, M. et al. Early expression and high prevalence of islet autoantibodies for DR3/4 heterozygous and DR4/4 homozygous offspring of parents with Type I diabetes: the German BABYDIAB study. Diabetologia 42, 671–677 (1999). · DOI
  37. Hurst, S. M. et al. Il-6 and its soluble receptor orchestrate a temporal switch in the pattern of leukocyte recruitment seen during acute inflammation. Immunity 14, 705–714 (2001). · DOI · Paper page
  38. Jones, S. A., Horiuchi, S., Topley, N., Yamamoto, N. & Fuller, G. M. The soluble interleukin 6 receptor: mechanisms of production and implications in disease. FASEB J. 15, 43–58 (2001). · DOI
  39. Emery, P. et al. IL-6 receptor inhibition with tocilizumab improves treatment outcomes in patients with rheumatoid arthritis refractory to anti-tumour necrosis factor biologicals: results from a 24-week multicentre randomised placebo-controlled trial. Ann. Rheum. Dis. 67, 1516–1523 (2008). · DOI · Paper page
  40. Cutolo, M. Rheumatoid arthritis: circadian and circannual rhythms in RA. Nat. Rev. Rheumatol. 7, 500–502 (2011). · DOI
  41. Knip, M. et al. Environmental triggers and determinants of type 1 diabetes. Diabetes 54, (Suppl 2): S125–S136 (2005). · DOI
  42. Thompson, D., Pepys, M. B. & Wood, S. P. The physiological structure of human C-reactive protein and its complex with phosphocholine. Structure 7, 169–177 (1999). · DOI · Paper page
  43. Querec, T. D. et al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nat. Immunol. 10, 116–125 (2009). · DOI
  44. Li, S. et al. Molecular signatures of antibody responses derived from a systems biology study of five human vaccines. Nat. Immunol. 15, 195–204 (2014). · DOI
  45. Nakaya, H. I. et al. Systems biology of vaccination for seasonal influenza in humans. Nat. Immunol. 12, 786–795 (2011). · DOI
  46. Mohamed-Ali, V. et al. Subcutaneous adipose tissue releases interleukin-6, but not tumor necrosis factor-alpha, in vivo. J. Clin. Endocrinol. Metab. 82, 4196–4200 (1997).
  47. Orru, V. et al. Genetic variants regulating immune cell levels in health and disease. Cell 155, 242–256 (2013). · DOI
  48. Wium-Andersen, M., Ørsted, D., Nielsen, S. & Nordestgaard, B. ELevated c-reactive protein levels, psychological distress, and depression in 73 131 individuals. JAMA Psychiatry 70, 176–184 (2013). · DOI · Paper page
  49. Brandes, M., Klauschen, F., Kuchen, S. & Germain, R. N. A systems analysis identifies a feedforward inflammatory circuit leading to lethal influenza infection. Cell 154, 197–212 (2013). · DOI
  50. Yamaguchi, Y. et al. Mice genetically deficient in vasopressin V1a and V1b receptors are resistant to jet lag. Science 342, 85–90 (2013). · DOI
  51. Bach, J. F. The effect of infections on susceptibility to autoimmune and allergic diseases. N. Engl. J. Med. 347, 911–920 (2002). · DOI
  52. Archer, S. N. et al. Mistimed sleep disrupts circadian regulation of the human transcriptome. Proc. Natl Acad. Sci. USA 111, E682–E691 (2014). · DOI · Paper page
  53. Tamarkin, L., Baird, C. J. & Almeida, O. F. Melatonin: a coordinating signal for mammalian reproduction? Science 227, 714–720 (1985). · DOI
  54. Lu, W., Meng, Q. J., Tyler, N. J., Stokkan, K. A. & Loudon, A. S. A circadian clock is not required in an arctic mammal. Curr. Biol. 20, 533–537 (2010). · DOI
  55. Saenz de Miera, C. et al. A circannual clock drives expression of genes central for seasonal reproduction. Curr. Biol. 24, 1500–1506 (2014). · DOI
  56. Tanikawa, C. et al. Genome wide association study of age at menarche in the Japanese population. PloS ONE 8, e63821 (2013). · DOI
  57. Stettler, C. et al. Serum amyloid A, C-reactive protein, and retinal microvascular changes in hypertensive diabetic and nondiabetic individuals: an Anglo-Scandinavian Cardiac Outcomes Trial (ASCOT) substudy. Diabetes Care 32, 1098–1100 (2009). · DOI
  58. Wang, J., Duncan, D., Shi, Z. & Zhang, B. WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013. Nucleic Acids Res. 41, W77–W83 (2013). · DOI

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Metadata

Authors
Dopico, X. C., Evangelou, M., Ferreira, R. C., Guo, H., Pekalski, M. L., Smyth, D. J., Cooper, N., Burren, O. S., Fulford, A. J., Hennig, B. J., Prentice, A. M., Ziegler, A.-G., Bonifacio, E., Wallace, C., & Todd, J. A.
Venue
Nature Communications
Published
2015-05-12
Volume
6
Issue
1
ISSN
2041-1723
Cited by
472
References
12
Language
en

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