Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization
Open accessAbstract
Allergen-specific immunoglobulin E (present in allergic sensitization) has a central role in the pathogenesis of allergic disease. We performed the first large-scale genome-wide association study (GWAS) of allergic sensitization in 5,789 affected individuals and 10,056 controls and followed up the top SNP at each of 26 loci in 6,114 affected individuals and 9,920 controls. We increased the number of susceptibility loci with genome-wide significant association with allergic sensitization from three to ten, including SNPs in or near TLR6, C11orf30, STAT6, SLC25A46, HLA-DQB1, IL1RL1, LPP, MYC, IL2 and HLA-B. All the top SNPs were associated with allergic symptoms in an independent study. Risk-associated variants at these ten loci were estimated to account for at least 25% of allergic sensitization and allergic rhinitis. Understanding the molecular mechanisms underlying these associations may provide new insights into the etiology of allergic disease.
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An accompanying GWAS on allergic sensitization showed strong overlap between top hits for sensitization and self-reported allergies.
“In an accompanying GWAS on allergic sensitization, there was strong overlap between top hits for sensitization and self-reported allergies.487,493”
From International Consensus Statement on Allergy and Rhinology: Allergic Rhinitis (2018) · cites this paper as [493]
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- Authors
- Australian Asthma Genetics Consortium (AAGC), Bønnelykke, K., the EArly Genetics and Lifecourse Epidemiology (EAGLE) Consortium, Matheson, M. C., Pers, T. H., Granell, R., Strachan, D. P., Alves, A. C., Linneberg, A., Curtin, J. A., Warrington, N. M., Standl, M., Kerkhof, M., Jonsdottir, I., Bukvic, B. K., Kaakinen, M., Sleimann, P., Thorleifsson, G., Thorsteinsdottir, U., Schramm, K., Baltic, S., Kreiner-Møller, E., Simpson, A., Pourcain, B. S., Coin, L., Hui, J., Walters, E. H., Tiesler, C. M. T., Duffy, D. L., Jones, G., Ring, S. M., McArdle, W. L., Price, L., Robertson, C. F., Pekkanen, J., Tang, C. S., Thiering, E., Montgomery, G. W., Hartikainen, A.-L., Dharmage, S. C., Husemoen, L. L., Herder, C., Kemp, J. P., Elliot, P., James, A., Waldenberger, M., Abramson, M. J., Fairfax, B. P., Knight, J. C., Gupta, R., Thompson, P. J., Holt, P., Sly, P., Hirschhorn, J. N., Blekic, M., Weidinger, S., Hakonarsson, H., Stefansson, K., Heinrich, J., Postma, D. S., Custovic, A., Pennell, C. E., Jarvelin, M.-R., Koppelman, G. H., Timpson, N., Ferreira, M. A., & Bisgaard, H.
- Affiliations
- University of Copenhagen (DK)
- The University of Melbourne (AU)
- Broad Institute (US)
- University of Bristol (GB)
- University of London (GB)
- Imperial College London (GB)
- Glostrup Hospital (DK)
- National Health Service (GB)
- The University of Western Australia (AU)
- Helmholtz Munich (DE)
- University Medical Center Groningen (NL)
- University of Oulu (FI)
- University of Tasmania (AU)
- QIMR Berghofer Medical Research Institute (AU)
- Western Sydney University (AU)
- Murdoch Children's Research Institute (AU)
- University of Eastern Finland (FI)
- Deutsches Diabetes-Zentrum e.V. (DE)
- Monash University (AU)
- Centre for Human Genetics (GB)
- Technical University of Denmark (DK)
- The Kids Research Institute Australia (AU)
- The University of Queensland (AU)
- University Hospital Schleswig-Holstein (DE)
- Corresponding author
- Bønnelykke, Klaus
- ORCID
- Bønnelykke, Klaus
- Matheson, Melanie C
- Pers, Tune H
- Granell, Raquel
- Strachan, David P
- Alves, Alexessander Couto
- Linneberg, Allan
- Curtin, John A
- Warrington, Nicole M
- Standl, Marie
- Kerkhof, Marjan
- Kaakinen, Marika
- Schramm, Katharina
- Baltic, Svetlana
- Simpson, Angela
- Coin, Lachlan
- Hui, Jennie
- Walters, Eugene H
- Duffy, David L
- Ring, Susan M
- McArdle, Wendy L
- Pekkanen, Juha
- Tang, Clara S
- Thiering, Elisabeth
- Montgomery, Grant W
- Dharmage, Shyamali C
- Husemoen, Lise L
- Herder, Christian
- Kemp, John P
- Abramson, Michael J
- Fairfax, Benjamin P
- Knight, Julian C
- Gupta, Ramneek
- Thompson, Philip J
- Holt, Patrick
- Sly, Peter
- Hirschhorn, Joel N
- Weidinger, Stephan
- Heinrich, Joachim
- Postma, Dirkje S
- Pennell, Craig E
- Koppelman, Gerard H
- Timpson, Nicholas
- Ferreira, Manuel A
- Bisgaard, Hans
- Venue
- Nature Genetics
- Published
- 2013-06-30
- Volume
- 45
- Issue
- 8
- Pages
- 902-906
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- PMC
- PMC4922420
- OpenAlex
- W2128738903
- Cited by
- 244
- References
- 45
- Citations by year
- 2026: 2 · 2025: 10 · 2024: 7 · 2023: 11 · 2022: 16 · 2021: 19 · 2020: 22 · 2019: 12 · 2018: 23 · 2017: 22 · 2016: 27 · 2015: 33 · 2014: 32 · 2013: 8
- FWCI
- 4.09
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Research Explorer (The University of Manchester) (publishedVersion)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- eCite Digital Repository (University of Tasmania) (submittedVersion)
- UWA Profiles and Research Repository (UWA) (submittedVersion)
- FedUni ResearchOnline (Federation University Australia) (submittedVersion)
- Figshare (submittedVersion, cc-by)
- The HKU Scholars Hub (University of Hong Kong) (submittedVersion)
- Site cant be reached (submittedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
- Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU) (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Explore Bristol Research (submittedVersion)
- Bristol Research (University of Bristol) (submittedVersion)
- Hirsla (Landspítali University Hospital) (submittedVersion)
- STM:n Hallinnonalan avoin julkaisuarkisto (Julkari) (submittedVersion)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion)
- Funders
- Wellcome Trust (092731, 090532)
- National Institute for Health and Care Research (ACF-2008-13-017, CL-2012-13-004)
- Lundbeckfonden (R16-2007-1694)
- Medical Research Council (MR/K002449/1, MC_PC_15018)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Health Sciences › Medicine › Immunology and Allergy › Allergic Rhinitis and Sensitization
- Health Sciences › Medicine › Physiology › Asthma and respiratory diseases
- Keywords
- allergen sensitization, genetic susceptibility loci, allergic rhinitis, atopic diseases, allergen-specific immunoglobulin E, TLR6, STAT6, HLA-DQB1, ST2, LPP, c-Myc, interleukin-2, HLA-B, SLC25A46, genetic risk variants
- MeSH terms
- Alleles, Humans, Hypersensitivity, Phenotype, Signal Transduction, Computational Biology, Polymorphism, Single Nucleotide, Genomics, Quantitative Trait Loci, Gene Regulatory Networks, Genome-Wide Association Study, Genetic Loci
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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