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mGRASP enables mapping mammalian synaptic connectivity with light microscopy
Open accessAbstract
The GFP reconstitution across synaptic partners (GRASP) technique, based on functional complementation between two nonfluorescent GFP fragments, can be used to detect the location of synapses quickly, accurately and with high spatial resolution. The method has been previously applied in the nematode and the fruit fly but requires substantial modification for use in the mammalian brain. We developed mammalian GRASP (mGRASP) by optimizing transmembrane split-GFP carriers for mammalian synapses. Using in silico protein design, we engineered chimeric synaptic mGRASP fragments that were efficiently delivered to synaptic locations and reconstituted GFP fluorescence in vivo. Furthermore, by integrating molecular and cellular approaches with a computational strategy for the three-dimensional reconstruction of neurons, we applied mGRASP to both long-range circuits and local microcircuits in the mouse hippocampus and thalamocortical regions, analyzing synaptic distribution in single neurons and in dendritic compartments.
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Cites
Berman, H. M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.235 · Cited by 40,196
SignalP 4.0: discriminating signal peptides from transmembrane regions
Petersen, T. N., Brunak, S., von Heijne, G., & Nielsen, H. (2011) · Nature Methods · doi:10.1038/nmeth.1701 · Cited by 8,847
Single-channel currents recorded from membrane of denervated frog muscle fibres
NEHER, E., & SAKMANN, B. (1976) · Nature · doi:10.1038/260799a0 · Cited by 2,570
Neuronal Diversity and Temporal Dynamics: The Unity of Hippocampal Circuit Operations
Klausberger, T., & Somogyi, P. (2008) · Science · doi:10.1126/science.1149381 · Cited by 2,050
Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system
Livet, J., Weissman, T. A., Kang, H., Draft, R. W., Lu, J., Bennis, R. A., Sanes, J. R., & Lichtman, J. W. (2007) · Nature · doi:10.1038/nature06293 · Cited by 1,876
Large-scale recording of neuronal ensembles
Buzsáki, G. (2004) · Nature Neuroscience · doi:10.1038/nn1233 · Cited by 1,875
Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure
Denk, W., & Horstmann, H. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020329 · Cited by 1,644
Autism and Abnormal Development of Brain Connectivity: Figure 1.
Belmonte, M. K., Allen, G., Beckel-Mitchener, A., Boulanger, L. M., Carper, R. A., & Webb, S. J. (2004) · The Journal of Neuroscience · doi:10.1523/jneurosci.3340-04.2004 · Cited by 1,217
Monosynaptic Restriction of Transsynaptic Tracing from Single, Genetically Targeted Neurons
Wickersham, I. R., Lyon, D. C., Barnard, R. J. O., Mori, T., Finke, S., Conzelmann, K.-K., Young, J. A. T., & Callaway, E. M. (2007) · Neuron · doi:10.1016/j.neuron.2007.01.033 · Cited by 1,187
Cserzo, M., Wallin, E., Simon, I., von Heijne, G., & Elofsson, A. (1997) · Protein Engineering Design and Selection · doi:10.1093/protein/10.6.673 · Cited by 1,034
Megı́as, M., Emri, Z., Freund, T. F., & Gulyás, A. I. (2001) · Neuroscience · doi:10.1016/s0306-4522(00)00496-6 · Cited by 950
Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections
Petreanu, L., Huber, D., Sobczyk, A., & Svoboda, K. (2007) · Nature Neuroscience · doi:10.1038/nn1891 · Cited by 930
Wiring specificity in the direction-selectivity circuit of the retina
Briggman, K. L., Helmstaedter, M., & Denk, W. (2011) · Nature · doi:10.1038/nature09818 · Cited by 883
Network anatomy and in vivo physiology of visual cortical neurons
Bock, D. D., Lee, W.-C. A., Kerlin, A. M., Andermann, M. L., Hood, G., Wetzel, A. W., Yurgenson, S., Soucy, E. R., Kim, H. S., & Reid, R. C. (2011) · Nature · doi:10.1038/nature09802 · Cited by 870
Micheva, K. D., & Smith, S. J. (2007) · Neuron · doi:10.1016/j.neuron.2007.06.014 · Cited by 787
Feinberg, E. H., VanHoven, M. K., Bendesky, A., Wang, G., Fetter, R. D., Shen, K., & Bargmann, C. I. (2008) · Neuron · doi:10.1016/j.neuron.2007.11.030 · Cited by 720
Peng, H., Ruan, Z., Long, F., Simpson, J. H., & Myers, E. W. (2010) · Nature Biotechnology · doi:10.1038/nbt.1612 · Cited by 707
Self-citationSerial section scanning electron microscopy of adult brain tissue using focused ion beam milling
Knott, G., Marchman, H., Wall, D., & Lich, B. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.3189-07.2008 · Cited by 692
Production and characterization of adeno-associated viral vectors
Grieger, J. C., Choi, V. W., & Samulski, R. J. (2006) · Nature Protocols · doi:10.1038/nprot.2006.207 · Cited by 581
Motor control in a Drosophila taste circuit
Gordon, M. D., & Scott, K. (2009) · Neuron · doi:10.1016/j.neuron.2008.12.033 · Cited by 531
Codon‐improved Cre recombinase (iCre) expression in the mouse
Shimshek, D. R., Kim, J., Hübner, M. R., Spergel, D. J., Buchholz, F., Casanova, E., Stewart, A. F., Seeburg, P. H., & Sprengel, R. (2002) · genesis · doi:10.1002/gene.10023 · Cited by 398
Self-citationWang, H., Peca, J., Matsuzaki, M., Matsuzaki, K., Noguchi, J., Qiu, L., Wang, D., Zhang, F., Boyden, E., Deisseroth, K., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0700384104 · Cited by 390
Lacaille, J., Mueller, A., Kunkel, D., & Schwartzkroin, P. (1987) · The Journal of Neuroscience · doi:10.1523/jneurosci.07-07-01979.1987 · Cited by 388
Neuroligins and neurexins: linking cell adhesion, synapse formation and cognitive function
Dean, C., & Dresbach, T. (2006) · Trends in Neurosciences · doi:10.1016/j.tins.2005.11.003 · Cited by 362
Single-Synapse Analysis of a Diverse Synapse Population: Proteomic Imaging Methods and Markers
Micheva, K. D., Busse, B., Weiler, N. C., O'Rourke, N., & Smith, S. J. (2010) · Neuron · doi:10.1016/j.neuron.2010.09.024 · Cited by 336
Stereotaxic gene delivery in the rodent brain
Cetin, A., Komai, S., Eliava, M., Seeburg, P. H., & Osten, P. (2006) · Nature Protocols · doi:10.1038/nprot.2006.450 · Cited by 323
The Architecture of the Active Zone in the Presynaptic Nerve Terminal
Zhai, R. G., & Bellen, H. J. (2004) · Physiology · doi:10.1152/physiol.00014.2004 · Cited by 297
Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective
Mishchenko, Y., Hu, T., Spacek, J., Mendenhall, J., Harris, K. M., & Chklovskii, D. B. (2010) · Neuron · doi:10.1016/j.neuron.2010.08.014 · Cited by 275
Organization of NMDA receptors at extrasynaptic locations
Petralia, R. S., Wang, Y. X., Hua, F., Yi, Z., Zhou, A., Ge, L., Stephenson, F. A., & Wenthold, R. J. (2010) · Neuroscience · doi:10.1016/j.neuroscience.2010.01.022 · Cited by 227
Self-citationNeurexins Physically and Functionally Interact with GABAA Receptors
Zhang, C., Atasoy, D., Araç, D., Yang, X., Fucillo, M. V., Robison, A. J., Ko, J., Brunger, A. T., & Südhof, T. C. (2010) · Neuron · doi:10.1016/j.neuron.2010.04.008 · Cited by 187
Tang, W., Ehrlich, I., Wolff, S. B. E., Michalski, A.-M., Wolfl, S., Hasan, M. T., Luthi, A., & Sprengel, R. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.0359-09.2009 · Cited by 179
Zhao, T., Xie, J., Amat, F., Clack, N. G., Ahammad, P., Peng, H., Long, F., & Myers, E. W. (2011) · Neuroinformatics · doi:10.1007/s12021-011-9120-3 · Cited by 117
Self-citationZhang, Z. (2002) · Nucleic Acids Research · doi:10.1093/nar/gnf089 · Cited by 101
Viewing the brain through the master hand of Ramon y Cajal
Sotelo, C. (2003) · Nature reviews. Neuroscience · doi:10.1038/nrn1010 · Cited by 97
Polarized targeting of neurexins to synapses is regulated by their C-terminal sequences
Fairless, R., Masius, H., Rohlmann, A., Heupel, K., Ahmad, M., Reissner, C., Dresbach, T., & Missler, M. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.5294-07.2008 · Cited by 91
Navarro-Quiroga, I., Chittajallu, R., Gallo, V., & Haydar, T. F. (2007) · Journal of Neuroscience · doi:10.1523/jneurosci.0867-07.2007 · Cited by 79
Two-photon targeted patching (TPTP) in vivo
Komai, S., Denk, W. T., Osten, P., Brecht, M., & Margrie, T. W. (2006) · Nature Protocols · doi:10.1038/nprot.2006.100 · Cited by 62
Cre recombinase‐mediated gene deletion in layer 4 of murine sensory cortical areas
Liao, G., & Xu, B. (2008) · genesis · doi:10.1002/dvg.20393 · Cited by 16
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Ke, M.-T., Fujimoto, S., & Imai, T. (2013) · Nature Neuroscience · doi:10.1038/nn.3447 · Cited by 892
CLARITY for mapping the nervous system
Chung, K., & Deisseroth, K. (2013) · Nature Methods · doi:10.1038/nmeth.2481 · Cited by 747
Labeling of active neural circuits in vivo with designed calcium integrators
Fosque, B. F., Sun, Y., Dana, H., Yang, C.-T., Ohyama, T., Tadross, M. R., Patel, R., Zlatic, M., Kim, D. S., Ahrens, M. B., et al. (2015) · Science · doi:10.1126/science.1260922 · Cited by 458
Genetic Dissection of Neural Circuits: A Decade of Progress
Luo, L., Callaway, E. M., & Svoboda, K. (2018) · Neuron · doi:10.1016/j.neuron.2018.03.040 · Cited by 448
High-throughput mapping of single-neuron projections by sequencing of barcoded RNA
Kebschull, J. M., Garcia da Silva, P., Reid, A. P., Peikon, I. D., Albeanu, D. F., & Zador, A. M. (2016) · Neuron · doi:10.1016/j.neuron.2016.07.036 · Cited by 376
Metadata
- Authors
- Kim, J., Zhao, T., Petralia, R. S., Yu, Y., Peng, H., Myers, E., & Magee, J. C.
- Venue
- Nature Methods
- Published
- 2011-12-04
- Volume
- 9
- Issue
- 1
- Pages
- 96-102
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2099021265
- Cited by
- 286
- References
- 38
- FWCI
- 6.55
- Type
- journal article
- Language
- en
- Open access
- green
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