The DOI matches its Crossref record; 12 of the 12 references it cites were found in a registry or an index.
A travel guide to Cytoscape plugins
Open accessAbstract
Cytoscape is open-source software for integration, visualization and analysis of biological networks. It can be extended through Cytoscape plugins, enabling a broad community of scientists to contribute useful features. This growth has occurred organically through the independent efforts of diverse authors, yielding a powerful but heterogeneous set of tools. We present a travel guide to the world of plugins, covering the 152 publicly available plugins for Cytoscape 2.5–2.8. We also describe ongoing efforts to distribute, organize and maintain the quality of the collection.
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Self-citation
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Traumatic injury compromises nucleocytoplasmic transport and leads to TDP-43 pathology
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“Another approach is to use the STRING: disease query app in Cytoscape [77] which provides directly disease associated proteins, that are obtained from the DISEASES database [78] that collects gene to disease associations from several types of sources and the different types of evidence are unified by assigning them a…”
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Identification and functional analysis of specific MS risk miRNAs and their target genes
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The Inferred Cardiogenic Gene Regulatory Network in the Mammalian Heart
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Rudhra, O., & Singh, S. K. (2026) · Computers in Biology and Medicine · doi:10.1016/j.compbiomed.2026.111822 · Cited by 1
Chaudhuri, A., Das, S., & Chakrabarti, S. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.137154
Metadata
- Authors
- Saito, R., Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P.-L., Lotia, S., Pico, A. R., Bader, G. D., & Ideker, T.
- Venue
- Nature Methods
- Published
- 2012-11
- Volume
- 9
- Issue
- 11
- Pages
- 1069-1076
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2000860171
- Cited by
- 1,500
- References
- 12
- FWCI
- 47.75
- Type
- journal article
- Language
- en
- Open access
- green
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