DADA2: High–resolution sample inference from Illumina amplicon data
Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P·2016·Nature Methods
Cited by (224)
Items 201–224 of 224
- Antimetabolite drugs exhibit distinctive immunomodulatory mechanisms and effects on the intestinal microbiota in experimental autoimmune uveitisLlorenç, Victor, Nakamura, Yukiko, Metea, Christina, Karstens, Lisa, Molins, Blanca, Lin, Phoebe · 2022 · Investigative Opthalmology & Visual Science
- Universal Drivers of Cheese MicrobiomesReuben, Rine Christopher, Langer, Désirée, Eisenhauer, Nico, Jurburg, Stephanie D. · 2023 · iScience
- Integrated Microbiome and Host Transcriptome Profiles Link Parkinson’s Disease to Blautia Genus: Evidence From Feces, Blood, and BrainGuo, Xingzhi, Tang, Peng, Hou, Chen, Chong, Li, Zhang, Xin, Liu, Peng, Chen, Li, Liu, Yue, Zhang, Lina, Li, Rui · 2022 · Frontiers in Microbiology
- Microbiota assessments for the identification and confirmation of slit defect-causing bacteria in milk and cheddar cheeseXue, Zhengyao, Brooks, Jason T., Quart, Zachary, Stevens, Eric T., Kable, Mary E., Heidenreich, Jessie, McLeod, Jeremy, Marco, Maria L. · 2021 · mSystems
- DNA extraction bias is more pronounced for microbial eukaryotes than for prokaryotesBrauer, Anne, Bengtsson, Mia M. · 2022 · MicrobiologyOpen
- <i>In Vitro</i>
Gut Modeling as a Tool for Adaptive Evolutionary Engineering of
<i>Lactiplantibacillus plantarum</i>Isenring, Julia, Geirnaert, Annelies, Hall, Alex R., Jans, Christoph, Lacroix, Christophe, Stevens, Marc J. A. · 2021 · mSystems
- Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infectionLe Luyer, J., Schull, Q., Auffret, P., Lopez, P., Crusot, M., Belliard, C., Basset, C., Carradec, Q., Poulain, J., Planes, S. et al. · 2021 · Animal Microbiome
- Biodegradable mulch films exhibit slower-than-expected degradation with negligible effects on soil microbial communitiesGraf, Martine, Choiselat, Estelle, Reay, Michaela K., Bargiela, Rafael, Dimitriou, Athanasios, Liu, Qiuyun, Elias, Robert M., Golyshin, Peter N., Griffiths, Robert, Chadwick, David R. et al. · 2025 · Journal of Hazardous Materials
- Stress-induced glucocorticoids enhance acute inflammation by promoting the differentiation of Th17 cellsShimba, Akihiro, Cui, Guangwei, Abe, Shinya, Hirota, Keiji, Miyauchi, Eiji, Takami, Daichi, Tani-ichi, Shizue, Kato, Ryoma, Tajima, Masaki, Kanahashi, Toru et al. · 2025 · Cell Reports
- The impact of daily supplementation with rhamnogalacturonan-I on the gut microbiota in healthy adults: A randomized controlled trialJian, Ching, Sorensen, Nikolaj, Lutter, René, Albers, Ruud, de Vos, Willem, Salonen, Anne, Mercenier, Annick · 2024 · Biomedicine & Pharmacotherapy
- Effects of weight loss and feeding specially formulated diets on the body composition, blood metabolite profiles, voluntary physical activity, and fecal metabolites and microbiota of obese dogsOba, Patrícia M, Kelly, Janelle, Kostiuk, Darcia, Swanson, Kelly S · 2023 · Journal of Animal Science
- Assessment of the safety and efficacy of an oral probiotic-based vaccine against Aspergillus infection in captive-bred Humboldt penguins (Spheniscus humboldti)Thorel, Milan, Mateos-Hernandez, Lourdes, Mulot, Baptiste, Azzouni, Mouna Naila, Hodžić, Adnan, Gaillot, Hugues, Ruel, Yannick, Desoubeaux, Guillaume, Delaye, Jean-Baptiste, Obregon, Dasiel et al. · 2022 · Frontiers in Immunology
- A bibliometric analysis of studies on gut microbiota in attention-deficit and hyperactivity disorder from 2012 to 2021Zhao, Mingyi, Meng, Yang, Cao, Buzi, Tong, Jianbin, Liu, Xiaoying, Yan, Hao, Yang, Hanqi, Han, Houzhi, Liang, Xiaobing, Chen, Hui · 2023 · Frontiers in Microbiology
- Guild-based approach for mitigating information loss and distortion issues in microbiome analysisZhao, Liping, Wu, Guojun, Zhao, Naisi · 2024 · Journal of Clinical Investigation
- Municipal separate storm sewer system (MS4) dry weather flows and potential flow sources as assessed by conventional and advanced bacterial analysesLi, Dong, Van De Werfhorst, Laurie C., Ervin, Jared, Poresky, Aaron, Steets, Brandon, Rivers, Cindy, Sharp, Grant, Smith, Jen, Holden, Patricia A. · 2023 · Environmental Pollution
- Chronic mesenteric ischemia-induced intestinal dysbiosis resolved after revascularizationMunley, Jennifer A., Nagpal, Ravinder, Hanson, Nancy C., Mirzaie, Amin, Laquian, Liza, Mohr, Alicia M., Efron, Philip A., Arnaoutakis, Dean J., Cooper, Michol A. · 2023 · Journal of Vascular Surgery Cases, Innovations and Techniques
- Comprehensive profiling of smoked cheese from raw goat's milk handcrafted in Lower Silesia (Poland)Cardinali, Federica, Rampanti, Giorgia, Harasym, Joanna, Lucci, Paolo, Ferrocino, Ilario, Pacetti, Deborah, Fanesi, Benedetta, Milanović, Vesna, Garofalo, Cristiana, Petruzzelli, Annalisa et al. · 2025 · Food Research International
- Dynamics of Gut Metabolome and Microbiome Maturation during Early LifeAatsinki, Anna-Katariina, Lamichhane, Santosh, Isokääntä, Heidi, Sen, Partho, Kråkström, Matilda, Alves, Marina Amaral, Keskitalo, Anniina, Munukka, Eveliina, Karlsson, Hasse, Perasto, Laura et al. · 2023
- Dietary DNA Metabarcoding From Animal Fecal SamplesMcConnell, Rachel D., Jarrett, Crinan, Ferreira, Diogo F., Powell, Luke L., Quiñones, Alma L. S., Dominoni, Davide M., Welch, Andreanna J. · 2026 · Current Protocols
- Clinical Safety and Tolerability of
<i>Bifidobacterium bifidum</i>
BBi32: An 8‐Week Randomized, Double‐Blind, Placebo‐Controlled Trial With Genomic and In Vitro CorroborationFang, Shuguang, Wang, Shanni, Liu, Yinhua, Zhu, Chengsheng, Wang, Sijia, Xu, Fei · 2026 · Food Science & Nutrition
- Diversity and composition of gut microbiome of cervical cancer patients by 16S rRNA and whole-metagenome sequencingBiegert, Greyson, Karpinets, Tatiana, Wu, Xiaogang, Alam, Molly B. El, Sims, Travis T., Yoshida-Court, Kyoko, Lynn, Erica J., Yue, Jingyan, Medrano, Andrea Delgado, Petrosino, Joseph et al. · 2020
- FoodMicrobionet v4: a large, integrated, open and transparent database for food bacterial communitiesParente, Eugenio, Zotta, Teresa, Ricciardi, Annamaria · 2022
- Effects of silver diamine fluoride on oral bacteriome and mycobiome: a randomized clinical trialManerkar, Mayura, de Jesus, Vivianne Cruz, Mittermuller, Betty-Anne, Lee, Victor H. K., Singh, Sarbjeet, Bertone, Mary, Chelikani, Prashen, Schroth, Robert J. · 2025 · BMC Oral Health
- Weizmannia coagulans BC99 improved intestinal motility and chronic constipation through regulating gut microbiota: a randomized, double-blind, placebo-controlled trialWu, Ying, Zhou, Yiqing, Fan, Qiuxia, Gao, Yinyin, Fang, Shuguang, Sun, Yukun, Gu, Shaobin · 2026 · European Journal of Nutrition