DADA2: High–resolution sample inference from Illumina amplicon data

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Items 101–200 of 225

1. Sex-specific association between gut microbiome and fat distribution
   Min, Yan, Ma, Xiaoguang, Sankaran, Kris, Ru, Yuan, Chen, Lijin, Baiocchi, Mike, Zhu, Shankuan · 2019 · Nature Communications
2. Mining microbes for mental health: determining the role of microbial metabolic pathways in human brain health and disease
   Spichak, Simon, Bastiaanssen, Thomaz F.S., Berding, Kirsten, Vlckova, Klara, Clarke, Gerard, Dinan, Timothy G., Cryan, John F. · 2021 · Neuroscience & Biobehavioral Reviews
3. Orally administered Odoribacter laneus improves glucose control and inflammatory profile in obese mice by depleting circulating succinate
   Huber-Ruano, Isabel, Calvo, Enrique, Mayneris-Perxachs, Jordi, Rodríguez-Peña, M-Mar, Ceperuelo-Mallafré, Victòria, Cedó, Lídia, Núñez-Roa, Catalina, Miro-Blanch, Joan, Arnoriaga-Rodríguez, María, Balvay, Aurélie et al. · 2022 · Microbiome
4. A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow
   Proctor, Diana M., Fukuyama, Julia A., Loomer, Peter M., Armitage, Gary C., Lee, Stacey A., Davis, Nicole M., Ryder, Mark I., Holmes, Susan P., Relman, David A. · 2018 · Nature Communications
5. Short-term impact of sucralose consumption on the metabolic response and gut microbiome of healthy adults
   Thomson, Pamela, Santibañez, Rodrigo, Aguirre, Carolina, Galgani, Jose E., Garrido, Daniel · 2019 · British Journal Of Nutrition
6. Cancer Induces a Stress Ileopathy Depending on β-Adrenergic Receptors and Promoting Dysbiosis that Contributes to Carcinogenesis
   Yonekura, Satoru, Terrisse, Safae, Alves Costa Silva, Carolina, Lafarge, Antoine, Iebba, Valerio, Ferrere, Gladys, Goubet, Anne-Gaëlle, Fahrner, Jean-Eudes, Lahmar, Imran, Ueda, Kousuke et al. · 2022 · Cancer Discovery
7. No distinct microbiome signature of irritable bowel syndrome found in a Swedish random population
   Hugerth, Luisa W, Andreasson, Anna, Talley, Nicholas J, Forsberg, Anna M, Kjellström, Lars, Schmidt, Peter Thelin, Agreus, Lars, Engstrand, Lars · 2020 · Gut
8. Association of the gut microbiota with cognitive function in midlife
   Meyer, Katie, Lulla, Anju, Debroy, Kunal, Shikany, James M., Yaffe, Kristine, Meirelles, Osorio, Launer, Lenore J. · 2022 · JAMA Network Open
9. Social isolation alters behavior, the gut-immune-brain axis, and neurochemical circuits in male and female prairie voles
   Donovan, Meghan, Mackey, Calvin S., Platt, Grayson N., Rounds, Jacob, Brown, Amber N., Trickey, Darryl J., Liu, Yan, Jones, Kathryn M., Wang, Zuoxin · 2020 · Neurobiology of Stress
10. Interaction of bacterial genera associated with therapeutic response to immune checkpoint PD-1 blockade in a United States cohort
    Newsome, Rachel C., Gharaibeh, Raad Z., Pierce, Christine M., da Silva, Wildson Vieira, Paul, Shirlene, Hogue, Stephanie R., Yu, Qin, Antonia, Scott, Conejo-Garcia, Jose R., Robinson, Lary A. et al. · 2022 · Genome Medicine
11. SARS-CoV-2 infection and viral load are associated with the upper respiratory tract microbiome
    Rosas-Salazar, Christian, Kimura, Kyle S., Shilts, Meghan H., Strickland, Britton A., Freeman, Michael H., Wessinger, Bronson C., Gupta, Veerain, Brown, Hunter M., Rajagopala, Seesandra V., Turner, Justin H. et al. · 2021 · Journal of Allergy and Clinical Immunology
12. Genome–microbiome interplay provides insight into the determinants of the human blood metabolome
    Diener, Christian, Dai, Chengzhen L., Wilmanski, Tomasz, Baloni, Priyanka, Smith, Brett, Rappaport, Noa, Hood, Leroy, Magis, Andrew T., Gibbons, Sean M. · 2022 · Nature Metabolism
13. Reservoirs of antimicrobial resistance genes in retail raw milk
    Liu, Jinxin, Zhu, Yuanting, Jay-Russell, Michele, Lemay, Danielle G., Mills, David A. · 2020 · Microbiome
14. Environmental <scp>DNA</scp> metabarcoding read numbers and their variability predict species abundance, but weakly in non‐dominant species
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15. Altered Skin and Gut Microbiome in Hidradenitis Suppurativa
    McCarthy, Siobhán, Barrett, Maurice, Kirthi, Shivashini, Pellanda, Paola, Vlckova, Klara, Tobin, Anne-Marie, Murphy, Michelle, Shanahan, Fergus, O’Toole, Paul W. · 2022 · Journal of Investigative Dermatology
16. Temporal evolution of the microbiome, immune system, and epigenome with disease progression in ALS mice
    Figueroa-Romero, Claudia, Guo, Kai, Murdock, Benjamin J., Paez-Colasante, Ximena, Bassis, Christine M., Mikhail, Kristen A., Raue, Kristen D., Evans, Matthew C., Taubman, Ghislaine F., McDermott, Andrew J. et al. · 2019 · Disease Models &amp; Mechanisms
17. Neuroprotective Effect of Ceftriaxone on MPTP‐Induced Parkinson’s Disease Mouse Model by Regulating Inflammation and Intestinal Microbiota
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18. Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions
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19. Diet leaves a genetic signature in a keystone member of the gut microbiota
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20. Antibiotics promote intestinal growth of carbapenem-resistant <i>Enterobacteriaceae</i> by enriching nutrients and depleting microbial metabolites
    Yip, Alexander Y. G., King, Olivia G., Omelchenko, Oleksii, Kurkimat, Sanjana, Horrocks, Victoria, Mostyn, Phoebe, Danckert, Nathan, Ghani, Rohma, Satta, Giovanni, Jauneikaite, Elita et al. · 2023
21. Exercise-induced microbiota metabolite enhances CD8 T cell antitumor immunity promoting immunotherapy efficacy
    Phelps, Catherine M., Willis, Nathaniel B., Duan, Tingting, Lee, Amanda H., Zhang, Yue, Rodriguez J, Daphne M., Pandey, Surya P., Laughlin, Colin R., Rosen, Aaron B.I., McPherson, Alex C. et al. · 2025 · Cell
22. <i>Lactobacillus rhamnosus</i> probiotic prevents airway function deterioration and promotes gut microbiome resilience in a murine asthma model
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23. Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota
    Kawamoto, Shimpei, Uemura, Ken, Hori, Nozomi, Takayasu, Lena, Konishi, Yusuke, Katoh, Kazutaka, Matsumoto, Tomonori, Suzuki, Masae, Sakai, Yusuke, Matsudaira, Tatsuyuki et al. · 2023 · Nature Cell Biology
24. Nitrate reduction capacity of the oral microbiota is impaired in periodontitis: potential implications for systemic nitric oxide availability
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25. The effect of a microbial ecosystem therapeutic (MET-2) on recurrent Clostridioides difficile infection: a phase 1, open-label, single-group trial
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26. Analysis of matched skin and gut microbiome of patients with vitiligo reveals deep skin dysbiosis: link with mitochondrial and immune changes
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27. Geographic Differences in Gut Microbiota Composition Impact Susceptibility to Enteric Infection
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28. Combined Effects of Three High-Energy Charged Particle Beams Important for Space Flight on Brain, Behavioral and Cognitive Endpoints in B6D2F1 Female and Male Mice
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29. Colonization of the human gut by bovine bacteria present in Parmesan cheese
    Milani, Christian, Duranti, Sabrina, Napoli, Stefania, Alessandri, Giulia, Mancabelli, Leonardo, Anzalone, Rosaria, Longhi, Giulia, Viappiani, Alice, Mangifesta, Marta, Lugli, Gabriele Andrea et al. · 2019 · Nature Communications
30. Disruption of the microbiota affects physiological and evolutionary aspects of insecticide resistance in the German cockroach, an important urban pest
    Pietri, Jose E., Tiffany, Connor, Liang, Dangsheng · 2018 · PLOS ONE
31. Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice
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32. Faecal microbiota transplant ameliorates gut dysbiosis and cognitive deficits in Huntington’s disease mice
    Gubert, Carolina, Choo, Jocelyn M, Love, Chloe J, Kodikara, Saritha, Masson, Bethany A, Liew, Jamie J M, Wang, Yiwen, Kong, Geraldine, Narayana, Vinod K, Renoir, Thibault et al. · 2022 · Brain Communications
33. Bioremediation of Coastal Aquaculture Effluents Spiked with Florfenicol Using Microalgae-Based Granular Sludge—A Promising Solution for Recirculating Aquaculture Systems
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34. Almond snacking for 8 wk increases alpha-diversity of the gastrointestinal microbiome and decreases Bacteroides fragilis abundance compared with an isocaloric snack in college freshmen
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35. Sodium oligomannate alters gut microbiota, reduces cerebral amyloidosis and reactive microglia in a sex-specific manner
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36. Impact of a lactobacilli-containing gel on vulvovaginal candidosis and the vaginal microbiome
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37. Comprehensive understanding the impacts of dietary exposure to polyethylene microplastics on genetically improved farmed tilapia (Oreochromis niloticus): tracking from growth, microbiota, metabolism to gene expressions
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38. Metformin induces weight loss associated with gut microbiota alteration in non-diabetic obese women: a randomized double-blind clinical trial
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39. Vaginal Lactobacillus fatty acid response mechanisms reveal a metabolite-targeted strategy for bacterial vaginosis treatment
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40. Vitamin B12 is a limiting factor for induced cellular plasticity and tissue repair
    Kovatcheva, Marta, Melendez, Elena, Chondronasiou, Dafni, Pietrocola, Federico, Bernad, Raquel, Caballe, Adrià, Junza, Alexandra, Capellades, Jordi, Holguín-Horcajo, Adrián, Prats, Neus et al. · 2023 · Nature Metabolism
41. Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota
    Kearney, Sean M, Gibbons, Sean M, Poyet, Mathilde, Gurry, Thomas, Bullock, Kevin, Allegretti, Jessica R, Clish, Clary B, Alm, Eric J · 2018 · The ISME Journal
42. The gut microbiome regulates astrocyte reaction to Aβ amyloidosis through microglial dependent and independent mechanisms
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43. Effect of Bifidobacterium bifidum on Clinical Characteristics and Gut Microbiota in Attention-Deficit/Hyperactivity Disorder
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44. Functional Strain Redundancy and Persistent Phage Infection in Swiss Hard Cheese Starter Cultures
    Somerville, Vincent, Berthoud, Hélène, Schmidt, Remo S, Bachmann, Hans-Peter, Meng, Yi Hélène, Fuchsmann, Pascal, von Ah, Ueli, Engel, Philipp · 2022 · The ISME Journal
45. TREM2 deficiency reprograms intestinal macrophages and microbiota to enhance anti–PD-1 tumor immunotherapy
    Di Luccia, Blanda, Molgora, Martina, Khantakova, Darya, Jaeger, Natalia, Chang, Hao-Wei, Czepielewski, Rafael S., Helmink, Beth A., Onufer, Emily J., Fachi, José L., Bhattarai, Bishan et al. · 2024 · Science Immunology
46. Shorter sleep time relates to lower human defensin 5 secretion and compositional disturbance of the intestinal microbiota accompanied by decreased short-chain fatty acid production
    Shimizu, Yu, Yamamura, Ryodai, Yokoi, Yuki, Ayabe, Tokiyoshi, Ukawa, Shigekazu, Nakamura, Koshi, Okada, Emiko, Imae, Akihiro, Nakagawa, Takafumi, Tamakoshi, Akiko et al. · 2023 · Gut Microbes
47. Response of the human gut and saliva microbiome to urbanization in Cameroon
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48. Microbial composition of tumorous and adjacent gastric tissue is associated with prognosis of gastric cancer
    Lehr, Konrad, Nikitina, Darja, Vilchez-Vargas, Ramiro, Steponaitiene, Ruta, Thon, Cosima, Skieceviciene, Jurgita, Schanze, Denny, Zenker, Martin, Malfertheiner, Peter, Kupcinskas, Juozas et al. · 2023 · Scientific Reports
49. Metabolic landscape of the male mouse gut identifies different niches determined by microbial activities
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50. Short Chain Fatty Acids Protect the Cognitive Function of Sepsis Associated Encephalopathy Mice via GPR43
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51. Repurposing Metformin in Nondiabetic People With HIV: Influence on Weight and Gut Microbiota
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52. A data-driven approach for predicting the impact of drugs on the human microbiome
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53. Potential interaction between timing of infant complementary feeding and breastfeeding duration in determination of early childhood gut microbiota composition and <scp>BMI</scp>
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54. Altered gut microbiota in older adults with mild cognitive impairment: a case-control study
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55. Effect of dried oregano (Origanum vulgare L.) plant material in feed on methane production, rumen fermentation, nutrient digestibility, and milk fatty acid composition in dairy cows
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56. Post-exercise hypotension and skeletal muscle oxygenation is regulated by nitrate-reducing activity of oral bacteria
    Clarke, C., Kiernan, M., Willis, J.R., Gallardo-Alfaro, L., Casas-Agustench, P., White, D., Hickson, M., Gabaldon, T., Bescos, R. · 2019 · Free Radical Biology and Medicine
57. Gut microbiota in ALS: possible role in pathogenesis?
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58. Prior antibiotic administration disrupts anti-PD-1 responses in advanced gastric cancer by altering the gut microbiome and systemic immune response
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59. Mycobacteriaceae Mineralizes Micropolyethylene in Riverine Ecosystems.
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60. Identifying mechanisms that predict weight trajectory after bariatric surgery: rationale and design of the biobehavioral trial
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61. The intersect of genetics, environment, and microbiota in asthma-perspectives and challenges
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62. Effects of inulin-based prebiotics alone or in combination with probiotics on human gut microbiota and markers of immune system: a randomized, double-blind, placebo-controlled study in healthy subjects
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63. Geochemical, biological, and clumped Isotopologue evidence for substantial microbial methane production under carbon limitation in Serpentinites of the Samail ophiolite, Oman
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64. Pro-Inflammatory Diet Is Correlated with High Veillonella rogosae, Gut Inflammation and Clinical Relapse of Inflammatory Bowel Disease
    Rocha, Ilanna Marques Gomes da, Torrinhas, Raquel, Fonseca, Danielle, Lyra, Clelia de Oliveira, de Sousa Alves Neri, Julianna Lys, Balmant, Bianca Depieri, Callado, Letícia, Charlton, Karen, Queiroz, Natalia, Waitzberg, Dan L. · 2023 · Nutrients
65. Gut microbiota diversity but not composition is related to saliva cortisol stress response at the age of 2.5 months
    Keskitalo, Anniina, Aatsinki, Anna-Katariina, Kortesluoma, Susanna, Pelto, Juho, Korhonen, Laura, Lahti, Leo, Lukkarinen, Minna, Munukka, Eveliina, Karlsson, Hasse, Karlsson, Linnea · 2021 · Stress
66. Exploring Human-Genome Gut-Microbiome Interaction in Parkinson’s Disease
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67. High-Fiber Diet or Combined With Acarbose Alleviates Heterogeneous Phenotypes of Polycystic Ovary Syndrome by Regulating Gut Microbiota
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68. The gut microbiota profile in psoriasis: a Brazilian case-control study
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69. β‐Glucan attenuates cognitive impairment of <scp>APP</scp>/<scp>PS1</scp> mice via regulating intestinal flora and its metabolites
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70. Gene-environment-gut interactions in Huntington's disease mice are associated with environmental modulation of the gut microbiome
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71. Gastrointestinal Tract Dysbiosis Enhances Distal Tumor Progression through Suppression of Leukocyte Trafficking
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72. The intestinal microbiota as a predictor for antidepressant treatment outcome in geriatric depression: a prospective pilot study
    Lee, S. Melanie, Dong, Tien S., Krause-Sorio, Beatrix, Siddarth, Prabha, Milillo, Michaela M., Lagishetty, Venu, Datta, Tanya, Aguilar-Faustino, Yesenia, Jacobs, Jonathan P., Lavretsky, Helen · 2022 · International Psychogeriatrics
73. Longitudinal analysis of the gut microbiota during anti-PD-1 therapy reveals stable microbial features of response in melanoma patients
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74. Effects of Six Sequential Charged Particle Beams on Behavioral and Cognitive Performance in B6D2F1 Female and Male Mice
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75. The endometrial microbiota of women with or without a live birth within 12 months after a first failed IVF/ICSI cycle
    Bui, Bich Ngoc, van Hoogenhuijze, Nienke, Viveen, Marco, Mol, Femke, Teklenburg, Gijs, de Bruin, Jan-Peter, Besselink, Dagmar, Brentjens, Linda Stevens, Mackens, Shari, Rogers, Malbert R. C. et al. · 2023 · Scientific Reports
76. Multi-population cohort meta-analysis of human intestinal microbiota in early life reveals the existence of infant community state types (ICSTs)
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77. Effects of Sub-Chronic MPTP Exposure on Behavioral and Cognitive Performance and the Microbiome of Wild-Type and mGlu8 Knockout Female and Male Mice
    Torres, Eileen Ruth S., Akinyeke, Tunde, Stagaman, Keaton, Duvoisin, Robert M., Meshul, Charles K., Sharpton, Thomas J., Raber, Jacob · 2018 · Frontiers in Behavioral Neuroscience
78. Oligofructose improves small intestinal lipid-sensing mechanisms via alterations to the small intestinal microbiota
    Weninger, Savanna N., Herman, Chloe, Meyer, Rachel K., Beauchemin, Eve T., Kangath, Archana, Lane, Adelina I., Martinez, Taylor M., Hasneen, Tahia, Jaramillo, Sierra A., Lindsey, Jason et al. · 2023 · Microbiome
79. Effect of dry matter content on the microbial community and on the effectiveness of a microbial inoculant to improve the aerobic stability of corn silage
    Benjamim da Silva, Érica, Liu, Xiaojing, Mellinger, Caitlin, Gressley, Tanya F., Stypinski, Jason D., Moyer, Nicole A., Kung, Limin · 2022 · Journal of Dairy Science
80. High-resolution microbiome profiling for detection and tracking of Salmonella enterica
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81. Disentangling bias for non-destructive insect metabarcoding
    Martoni, Francesco, Piper, Alexander M., Rodoni, Brendan C., Blacket, Mark J. · 2022 · PeerJ
82. Assembly of gut-derived bacterial communities follows “early-bird” resource utilization dynamics
    Aranda-Díaz, Andrés, Willis, Lisa, Nguyen, Taylor H., Ho, Po-Yi, Vila, Jean, Thomsen, Tani, Chavez, Taylor, Yan, Rose, Yu, Feiqiao Brian, Neff, Norma et al. · 2023
83. Fecal microbiota transplantation from high caloric-fed donors alters glucose metabolism in recipient mice, independently of adiposity or exercise status
    Zoll, Jereon, Read, Mark N., Heywood, Sarah E., Estevez, Emma, Marshall, Jessica P. S., Kammoun, Helene L., Allen, Tamara L., Holmes, Andrew J., Febbraio, Mark A., Henstridge, Darren C. · 2020 · American Journal of Physiology-Endocrinology and Metabolism
84. Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection
    Duque-Correa, María A., Karp, Natasha A., McCarthy, Catherine, Forman, Simon, Goulding, David, Sankaranarayanan, Geetha, Jenkins, Timothy P., Reid, Adam J., Cambridge, Emma L., Ballesteros Reviriego, Carmen et al. · 2019 · PLOS Pathogens
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