The DOI matches its Crossref record; 31 of the 31 references it cites were found in a registry or an index.
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., & Salzberg, S. L. (2013) · Genome Biology · doi:10.1186/gb-2013-14-4-r36 · Cited by 12,668
Predicting effective microRNA target sites in mammalian mRNAs
Agarwal, V., Bell, G. W., Nam, J.-W., & Bartel, D. P. (2015) · eLife · doi:10.7554/elife.05005 · Cited by 7,318
Lorenz, R., Bernhart, S. H., Höner zu Siederdissen, C., Tafer, H., Flamm, C., Stadler, P. F., & Hofacker, I. L. (2011) · Algorithms for Molecular Biology · doi:10.1186/1748-7188-6-26 · Cited by 5,098
GENCODE: The reference human genome annotation for The ENCODE Project
Harrow, J., Frankish, A., Gonzalez, J. M., Tapanari, E., Diekhans, M., Kokocinski, F., Aken, B. L., Barrell, D., Zadissa, A., Searle, S., et al. (2012) · Genome Research · doi:10.1101/gr.135350.111 · Cited by 4,585
Self-citationRNAstructure: software for RNA secondary structure prediction and analysis
Reuter, J. S., & Mathews, D. H. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-129 · Cited by 2,012
High-throughput sequencing of DNA G-quadruplex structures in the human genome
Chambers, V. S., Marsico, G., Boutell, J. M., Di Antonio, M., Smith, G. P., & Balasubramanian, S. (2015) · Nature Biotechnology · doi:10.1038/nbt.3295 · Cited by 1,230
Self-citationIn vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
Ding, Y., Tang, Y., Kwok, C. K., Zhang, Y., Bevilacqua, P. C., & Assmann, S. M. (2014) · Nature · doi:10.1038/nature12756 · Cited by 775
Self-citationRNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer
Wolfe, A. L., Singh, K., Zhong, Y., Drewe, P., Rajasekhar, V. K., Sanghvi, V. R., Mavrakis, K. J., Jiang, M., Roderick, J. E., Van der Meulen, J., et al. (2014) · Nature · doi:10.1038/nature13485 · Cited by 635
Biffi, G., Di Antonio, M., Tannahill, D., & Balasubramanian, S. (2014) · Nature Chemistry · doi:10.1038/nchem.1805 · Cited by 606
Self-citationHarrell Jr, W. A. (2006) · Royal Society of Chemistry eBooks · doi:10.1039/9781847555298 · Cited by 532
Rodriguez, R., Müller, S., Yeoman, J. A., Trentesaux, C., Riou, J.-F., & Balasubramanian, S. (2008) · Journal of the American Chemical Society · doi:10.1021/ja805615w · Cited by 517
Self-citationUnderstanding the transcriptome through RNA structure
Wan, Y., Kertesz, M., Spitale, R. C., Segal, E., & Chang, H. Y. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3049 · Cited by 468
G-quadruplexes: the beginning and end of UTRs
Huppert, J. L., Bugaut, A., Kumari, S., & Balasubramanian, S. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn511 · Cited by 429
Self-citationMillevoi, S., Moine, H., & Vagner, S. (2012) · WIREs RNA · doi:10.1002/wrna.1113 · Cited by 277
Beaudoin, J.-D., & Perreault, J.-P. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt265 · Cited by 167
The RNA structurome: transcriptome-wide structure probing with next-generation sequencing
Kwok, C. K., Tang, Y., Assmann, S. M., & Bevilacqua, P. C. (2015) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2015.02.005 · Cited by 147
Self-citationZhang, A. Y. Q., Bugaut, A., & Balasubramanian, S. (2011) · Biochemistry · doi:10.1021/bi200805j · Cited by 144
Self-citationNew scoring system to identify RNA G-quadruplex folding
Beaudoin, J.-D., Jodoin, R., & Perreault, J. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt904 · Cited by 128
Effect of Loops and G-Quartets on the Stability of RNA G-Quadruplexes
Pandey, S., Agarwala, P., & Maiti, S. (2013) · The Journal of Physical Chemistry B · doi:10.1021/jp401739m · Cited by 125
Determination of in vivo RNA structure in low-abundance transcripts
Kwok, C. K., Ding, Y., Tang, Y., Assmann, S. M., & Bevilacqua, P. C. (2013) · Nature Communications · doi:10.1038/ncomms3971 · Cited by 123
Self-citationMOV10 and FMRP Regulate AGO2 Association with MicroRNA Recognition Elements
Kenny, P., Zhou, H., Kim, M., Skariah, G., Khetani, R. S., Drnevich, J. M., Arcila, M. L., Kosik, K. S., & Ceman, S. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.054 · Cited by 122
Structural Analysis using SHALiPE to Reveal RNA G‐Quadruplex Formation in Human Precursor MicroRNA
Kwok, C. K., Sahakyan, A. B., & Balasubramanian, S. (2016) · Angewandte Chemie International Edition · doi:10.1002/anie.201603562 · Cited by 115
Self-citationTargeted Detection of G‐Quadruplexes in Cellular RNAs
Kwok, C. K., & Balasubramanian, S. (2015) · Angewandte Chemie International Edition · doi:10.1002/anie.201500891 · Cited by 91
Self-citationA stable RNA G-quadruplex within the 5′-UTR of Arabidopsis thaliana ATR mRNA inhibits translation
Kwok, C. K., Ding, Y., Shahid, S., Assmann, S. M., & Bevilacqua, P. C. (2015) · Biochemical Journal · doi:10.1042/bj20141063 · Cited by 89
Self-citationThe RNA Stem–Loop to G-Quadruplex Equilibrium Controls Mature MicroRNA Production inside the Cell
Pandey, S., Agarwala, P., Jayaraj, G. G., Gargallo, R., & Maiti, S. (2015) · Biochemistry · doi:10.1021/acs.biochem.5b00574 · Cited by 85
Potential G-quadruplexes in the human long non-coding transcriptome
Jayaraj, G. G., Pandey, S., Scaria, V., & Maiti, S. (2012) · RNA Biology · doi:10.4161/rna.9.1.18047 · Cited by 73
Stefanovic, S., Bassell, G. J., & Mihailescu, M. (2014) · RNA · doi:10.1261/rna.046722.114 · Cited by 58
Amyloid Precursor Protein Translation Is Regulated by a 3’UTR Guanine Quadruplex
Crenshaw, E. M. D., Leung, B. C. L., Kwok, C. K., Sharoni, M. A., Olson, K. J., Sebastian, N. P., Ansaloni, S., Schweitzer‐Stenner, R., Akins, M. R., Bevilacqua, P. C., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0143160 · Cited by 58
Self-citationMartadinata, H., & Phan, A. T. (2014) · Biochemistry · doi:10.1021/bi4015727 · Cited by 50
Cited by
METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation
Pandolfini, L., Barbieri, I., Bannister, A. J., Hendrick, A., Andrews, B., Webster, N., Murat, P., Mach, P., Brandi, R., Robson, S. C., et al. (2019) · Molecular Cell · doi:10.1016/j.molcel.2019.03.040 · Cited by 491
Self-citationChemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex
Calabrese, D. R., Chen, X., Leon, E. C., Gaikwad, S. M., Phyo, Z., Hewitt, W. M., Alden, S., Hilimire, T. A., He, F., Michalowski, A. M., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-06315-w · Cited by 172
Poetsch, A. R., Boulton, S. J., & Luscombe, N. M. (2018) · Genome Biology · doi:10.1186/s13059-018-1582-2 · Cited by 132
Advances and challenges in identifying and characterizing G-quadruplex–protein interactions
Dai, Y., Teng, X., Zhang, Q., Hou, H., & Li, J. (2023) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2023.06.007 · Cited by 46
Targeting eIF4A-Dependent Translation of KRAS Signaling Molecules
Singh, K., Lin, J., Lecomte, N., Mohan, P., Gokce, A., Sanghvi, V. R., Jiang, M., Grbovic-Huezo, O., Burčul, A., Stark, S. G., et al. (2021) · Cancer Research · doi:10.1158/0008-5472.can-20-2929 · Cited by 39
Metadata
- Authors
- Kwok, C. K., Marsico, G., Sahakyan, A. B., Chambers, V. S., & Balasubramanian, S.
- Venue
- Nature Methods
- Published
- 2016-08-29
- Volume
- 13
- Issue
- 10
- Pages
- 841-844
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2518362417
- Cited by
- 438
- References
- 31
- FWCI
- 15.50
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.