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In vitro angiogenesis: endothelial cell tube formation on gelled basement membrane extract
Abstract
A protocol is presented here for a rapid, quantitative and reliable in vitro angiogenesis assay that can be adapted for high throughput use. Endothelial cells are plated on a gelled basement matrix, their natural substrate, and form capillary-like structures with a lumen. The assay can be used to identify inhibitors or stimulators of angiogenesis, as well as genes and signaling pathways involved in angiogenesis. It has also been used to identify endothelial progenitor cells. This assay involves endothelial cell adhesion, migration, protease activity and tubule formation. This tube formation assay is preferred, as other in vitro assays for angiogenesis, such as cell adhesion, migration and invasion, measure limited steps in the angiogenesis process. The tube formation assay on basement membrane can be completed in a day because transformed endothelial cells form tubes within 3 h, whereas non-transformed endothelial cells form tubes within 6 h.
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“together, the assays robustly assess the health of ECs.”
From An inflammatory aging clock (iAge) based on deep learning tracks multimorbidity, immunosenescence, frailty and cardiovascular aging (2021) · cites this paper as [53]
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ResultEngineering neurovascular organoids with 3D printed microfluidic chips
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“The tubulogenesis assay was performed as described in Arnaoutova and colleagues [34] using the thick gel method of preparation.”
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Patient‐Specific Bioinks for 3D Bioprinting of Tissue Engineering Scaffolds
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Anti‐CD73 therapy impairs tumor angiogenesis
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“Formation of capillary-like tubes by endothelial cells plated on a basement membrane matrix is a well-established method of assessing angiogenesis.(39) We thus assessed, in vitro, the role of CD73 during tube formation of HUVECs, which express A2A and A2B adenosine receptors (Supporting Information Fig.”
MethodFunctional Vascular Endothelium Derived from Human Induced Pluripotent Stem Cells
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“The in vitro angiogenesis assay was performed as previously described (Arnaoutova and Kleinman, 2010).”
MethodA review of mathematical models for the formation of vascular networks
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“Angiogenesis can also be simulated in vitro [17, 94], where clusters of ECs, cultivated in an extracellular matrix gel, are able to migrate, to proliferate and to build structures similar to capillaries.”
BackgroundLeveraging Physiology for Precision Drug Delivery
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“The basement membrane is a continuous and compact sheetlike structure mainly composed of type IV collagen, fibronectin, laminins with entactin, and nidogen as linkers (13).”
BackgroundDefective Black Nano-Titania Thermogels for Cutaneous Tumor-Induced Therapy and Healing
Wang, X., Ma, B., Xue, J., Wu, J., Chang, J., & Wu, C. (2019) · Nano Letters · doi:10.1021/acs.nanolett.9b00367 · Cited by 160
Hydrogels to model 3D in vitro microenvironment of tumor vascularization
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“In addition, Matrigel has shown to be an effective angiogenic assay tool alone or with various vascular cells, which can be used to identify pro- and anti-angiogenic molecules including those involved in genetic and signaling pathways of angiogenesis [77,78].”
BackgroundA systems biology view of blood vessel growth and remodelling
Logsdon, E. A., Finley, S. D., Popel, A. S., & Gabhann, F. M. (2013) · Journal of Cellular and Molecular Medicine · doi:10.1111/jcmm.12164 · Cited by 163
“To combine the strengths of in vivo and in vitro techniques, recent systems biology approaches are screening pro-angiogenic and antiangiogenic compounds using organotypic coculture or multi-culture [131–133].”
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Heparin Mimetic Peptide Nanofibers Promote Angiogenesis
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Platelets and Immune Responses During Thromboinflammation
Mezger, M., Nording, H., Sauter, M., Graf, T., Heim, C., von Bubnoff, N. C. C., Ensminger, S. M., & Langer, H. F. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.01731 · Cited by 139
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“Vessel-like structure formation by endothelial cells on a basement membrane matrix is a powerful in vitro method to examine for factors that modulate angiogenesis (21).”
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“The capillary-like tube formation assay using endothelial cells on a basement membrane matrix, such as Matrigel, is a useful in vitro experimental method for evaluating angiogenesis [88].”
MethodBioengineering approaches to guide stem cell-based organogenesis
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BackgroundIn situ prevascularization designed by laser-assisted bioprinting: effect on bone regeneration
Kérourédan, O., Hakobyan, D., Rémy, M., Ziane, S., Dusserre, N., Fricain, J., Delmond, S., Thébaud, N., & Devillard, R. (2019) · Biofabrication · doi:10.1088/1758-5090/ab2620 · Cited by 136
Versatile synthetic alternatives to Matrigel for vascular toxicity screening and stem cell expansion
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Nascimento, D. S., Mosqueira, D., Sousa, L. M., Teixeira, M., Filipe, M., Resende, T. P., Araújo, A. F., Valente, M., Almeida, J. M., Martins, J. P., et al. (2014) · Stem Cell Research & Therapy · doi:10.1186/scrt394 · Cited by 133
“The vasculogenesis assay was performed as described in [53], by using the thick gel method of preparation.”
MethodVascular Endothelial Cell-specific MicroRNA-15a Inhibits Angiogenesis in Hindlimb Ischemia
Yin, K., Olsen, K. F., Hamblin, M., Zhang, J., Schwendeman, S. P., & Chen, Y. E. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.364414 · Cited by 136
Zebrafish as an Emerging Model Organism to Study Angiogenesis in Development and Regeneration
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“…gradient within a migration chamber, through which endothelial cells can migrate Chung et al., 2010; Young, 2014 Morphogenesis (reviewed by Arnaoutova and Kleinman, 2010) Tubule formation 2D-tubule formation assay Endothelial cells are platelet on an extracellular matrix and monitored for…”
BackgroundMethodDecarli, M. C., do Amaral, R. L. F., dos Santos, D. P., Tofani, L. B., Katayama, E. T., Rezende, R. A., da Silva, J. V. L., Swiech, K., Suazo, C. A. T., Mota, C., et al. (2021) · Biofabrication · doi:10.1088/1758-5090/abe6f2 · Cited by 138
A Comparison of Methods for Quantifying Angiogenesis in the Matrigel Assay In Vitro
Khoo, C. P., Micklem, K., & Watt, S. M. (2011) · Tissue Engineering Part C Methods · doi:10.1089/ten.tec.2011.0150 · Cited by 129
“5 · 10(4) cells/ well in triplicate in 96-well plates coated with 50 mL of growth factor-reduced Matrigel (BD Biosciences, Oxford, England).(7) Parameters used in this study are summarized in Appendix Table 1.”
MethodPLGA Microparticles Entrapping Chitosan-Based Nanoparticles for the Ocular Delivery of Ranibizumab
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“Network lengths were measured from branch-point to the next adjacent branch-point within the network structures (Arnaoutova and Kleinman, 2010).”
Nanoparticle modulation of the tumor microenvironment enhances therapeutic efficacy of cisplatin
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A cerium oxide loaded glycol chitosan nano-system for the treatment of dry eye disease
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“In vitro primary corneal and conjunctival migration assay were performed in this study [40, 41].”
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“We next investigated and compared the ability of GC and GC cells in promoting the formation of 3D capillary-like tubular structure of HUVEC on the matrigel that mimics basement membrane matrix, encompassing all steps of angiogenesis [25].”
Agrin Promotes Coordinated Therapeutic Processes Leading to Improved Cardiac Repair in Pigs
Baehr, A., Umansky, K. B., Bassat, E., Klett, K., Jurisch, V., Bozoglu, T. M., Hornaschewitz, N., Solyanik, O., Kain, D., Ferraro, B., et al. (2020) · Circulation · doi:10.1161/circulationaha.119.045116 · Cited by 102
“For HUVEC tube formation, we used awell established protocol, described in (37).”
BackgroundMethodVascular tube formation and angiogenesis induced by polyvinylpyrrolidone-coated silver nanoparticles
Kang, K., Lim, D.-H., Choi, I., Kang, T., Lee, K., Moon, E.-Y., Yang, Y. D., Lee, M.-S., & Lim, J. (2011) · Toxicology Letters · doi:10.1016/j.toxlet.2011.05.1033 · Cited by 104
Molecular mechanism inhibiting human hepatocarcinoma cell invasion by 6‐shogaol and 6‐gingerol
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Transient Receptor Potential Canonical Channels Are Required for in Vitro Endothelial Tube Formation
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Development and Validation of an Automated High-Throughput System for Zebrafish In Vivo Screenings
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“The preferred in vitro method for assessing angiogeneic regulators is endothelial cell tube formation assay [44], [45], [46], [47].”
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Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression
Ferrarese, R., Harsh, G. R., Yadav, A. K., Bug, E., Maticzka, D., Reichardt, W., Dombrowski, S. M., Miller, T. E., Masilamani, A. P., Dai, F., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci68836 · Cited by 94
“This assay measures the ability of ECs, plated at subconfluent densities with the appropriate extracellular matrix support, to form capillary-like structures (aka tubes) (79).”
Fu, J., Wei, C., Zhang, W., Schlöndorff, D., Wu, J., Cai, M., Wu, H., Baron, M. H., Chuang, P. Y., Liu, Z., et al. (2018) · Kidney International · doi:10.1016/j.kint.2018.02.028 · Cited by 89
Secreted Threonyl-tRNA synthetase stimulates endothelial cell migration and angiogenesis
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“The residual gaps between the migrating c ells were measured and expressed as a percentage of the original cell-free area using Ima geJ software [18].”
MethodCell alignment and accumulation using acoustic nozzle for bioprinting
Sriphutkiat, Y., Kasetsirikul, S., Ketpun, D., & Zhou, Y. (2019) · Scientific Reports · doi:10.1038/s41598-019-54330-8 · Cited by 83
Targeted intervention in nerve–cancer crosstalk enhances pancreatic cancer chemotherapy
Qin, J., Liu, J., Wei, Z., Li, X., Chen, Z., Li, J., Zheng, W., Liu, H., Xu, S., Yong, T., et al. (2024) · Nature Nanotechnology · doi:10.1038/s41565-024-01803-1 · Cited by 83
“The migration and capillary tube formation of endothelial cells were essential for angiogenesis 42 .”
Techniques and assays for the study of angiogenesis
Irvin, M., Zijlstra, A., Wikswo, J. P., & Pozzi, A. (2014) · Experimental Biology and Medicine · doi:10.1177/1535370214529386 · Cited by 81
Lee, J., Lee, S., Ahmad, T., Perikamana, S. K. M., Lee, J., Kim, E. M., & Shin, H. (2020) · Biomaterials · doi:10.1016/j.biomaterials.2020.120192 · Cited by 79
Cui, J., Yu, X., Yu, B., Yang, X., Fu, Z., Wan, J., Zhu, M., Wang, X., & Lin, K. (2022) · Advanced Healthcare Materials · doi:10.1002/adhm.202200571 · Cited by 78
Calcitonin gene-related peptide promotes angiogenesis via AMP-activated protein kinase
Zheng, S., Li, W., Xu, M., Bai, X., Zhou, Z., Han, J., Shyy, J. Y.-J., & Wang, X. (2010) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00173.2010 · Cited by 79
“According to published methods (1), the degree of tube formation was quantified by measuring the number of tubes tube-like structures in five randomly chosen fields ( 100) from each dish using the NIH Image Program.”
MethodStamati, K., Priestley, J. V., Mudera, V., & Cheema, U. (2014) · Experimental Cell Research · doi:10.1016/j.yexcr.2014.05.012 · Cited by 78
Ge, Y., Wang, Q., Yao, Y., Qin, X., Sun, J., Chen, W., Lin, Y., & Cai, X. (2024) · Advanced Science · doi:10.1002/advs.202308701 · Cited by 77
Sialylation of vasorin by ST3Gal1 facilitates TGF‐β1‐mediated tumor angiogenesis and progression
Yeo, H. L., Fan, T.-C., Lin, R., Yu, J., Liao, G., Chen, E. S.-W., Ho, M., Lin, W., Chen, K., Chen, C., et al. (2018) · International Journal of Cancer · doi:10.1002/ijc.31891 · Cited by 75
“Endothelial cell tube formation The endothelial cell tube formation assay was performed as previously described.(20) Matrigel (BD, Bedford, MA) was added to 48-well plates in a volume of 150 μL and allowed to solidify at 37 C for 30 min.”
MethodAutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues
Zegarra, J. A. M., Russo, E., Runge, P., Jadhav, M., Willrodt, A., Stoma, S., Nørrelykke, S. F., Detmar, M. J., & Halin, C. (2018) · Angiogenesis · doi:10.1007/s10456-018-9652-3 · Cited by 73
“In these assays, the formation of vessel-like structures (tubes) by endothelial cells in gels containing extracellular matrix components is captured in 2D-microscopic images at a specific time point, followed by an imagebased quantitative analysis of the vascular network (most importantly of tube length) [13, 14].”
MethodDuan, T., Xu, Z., Sun, F., Wang, Y., Zhang, J., Luo, C., & Wang, M. (2019) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2019.109121 · Cited by 73
Smooth muscle SIRT1 reprograms endothelial cells to suppress angiogenesis after ischemia
Dou, Y., Kong, P., Li, C., Sun, H., Li, W., Yuan, Y. J., Nie, L., Zhao, L., Miao, S., Li, X., et al. (2020) · Theranostics · doi:10.7150/thno.39320 · Cited by 72
“The tube formation assay is a preferred protocol to identify inhibitors or stimulators of the angiogenic activity of ECs in vitro [34].”
MethodHove, A. H. V., Beltejar, M.-J. G., & Benoit, D. S. W. (2014) · Biomaterials · doi:10.1016/j.biomaterials.2014.08.019 · Cited by 71
“(Pathology Devices) on a Nikon Eclipse Ti 2000 inverted light microscope [37].”
Wu, H., Zhang, X., Han, D., Cao, J., & Tian, J. (2020) · PeerJ · doi:10.7717/peerj.8721 · Cited by 69
Chorioallantoic Membrane Assay as Model for Angiogenesis in Tissue Engineering: Focus on Stem Cells
Merckx, G., Tay, H., Monaco, M. L., van Zandvoort, M. A. M. J., Spiegelaere, W. D., Lambrichts, I., & Bronckaers, A. (2020) · Tissue Engineering Part B Reviews · doi:10.1089/ten.teb.2020.0048 · Cited by 70
“Finally, vessel network formation capacity is measured in the tube formation assay.(25,26) However, the relevance of these in vitro assays remains questionable, due to the lack of a functional blood flow, complex ECM, and cells.”
A wearable and stretchable dual-wavelength LED device for home care of chronic infected wounds
Li, M., Wang, C., Yu, Q., Chen, H., Ma, Y., Li, W., Wu, M. X., Yao, M., & Lu, M. (2024) · Nature Communications · doi:10.1038/s41467-024-53579-6 · Cited by 78
“Tube formation assay is an important method for studying angiogenesis in vitro 52 .”
Su, J. L.-S., Satchell, S. C., Wertheim, J. A., & Shah, R. N. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2019.02.001 · Cited by 71
“Experimental studies involving cell culture on hydrogel substrates were performed in a similar manner as previously-established endothelial cell tube formation assays[31, 32].”
MethodResultDJ-1 promotes angiogenesis and osteogenesis by activating FGF receptor-1 signaling
Kim, J., Shin, H.-I., Cha, S., Lee, C. S., Hong, B. S., Lim, S., Jang, H., Kim, J. J., Yang, Y. R., Kim, Y., et al. (2012) · Nature Communications · doi:10.1038/ncomms2313 · Cited by 66
Zhou, N., Zhao, W., Liu, D., Liang, Y., Fang, W., Li, B., & Chen, Y. (2011) · Microvascular Research · doi:10.1016/j.mvr.2011.06.005 · Cited by 67
A Novel Method for Isolating Individual Cellular Components from the Adult Human Distal Lung
Fujino, N., Kubo, H., Ota, C., Suzuki, T., Suzuki, S. O., Yamada, M., Takahashi, T., He, M. T., SUZUKI, T. A., Kondo, T., et al. (2011) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2011-0172oc · Cited by 66
“A tube formation assay was performed according to previously reported methods, with some modifications (16).”
Methodβ-Caryophyllene Induces Apoptosis and Inhibits Angiogenesis in Colorectal Cancer Models
Dahham, S. S., Tabana, Y., Asif, M., Ahmed, M., Babu, D., Hassan, L. E. A., Ahamed, M. B. K., Sandai, D. A., Barakat, K., Siraki, A. G., et al. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms221910550 · Cited by 65
“A well-established reported method (endothelial cell tube formation plate system for angiogenesis) was used to analyze the capillary formation ability of HUVECs on Matrigel® matrix [42].”
MethodMesoporous Silica Nanoparticles as an Antitumoral-Angiogenesis Strategy
Setyawati, M. I., & Leong, D. T. (2017) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.6b12524 · Cited by 65
Edman, N. I., Phal, A., Redler, R. L., Schlichthaerle, T., Srivatsan, S. R., Ehnes, D. D., Etemadi, A., An, S. J., Favor, A., Li, Z., et al. (2024) · Cell · doi:10.1016/j.cell.2024.05.025 · Cited by 62
“The capacity to assemble into capillary-like tubules is a hallmark phenotype of endothelial cells, 59 and the cells derived via FGFR c-isoform activation demonstrated a robust 2D network formation capacity (measured by numbers of nodes, segments, and meshes in a tube formation assay) (Figures 5F…”
BackgroundAndersson, H., & Brittebo, E. B. (2011) · Archives of Toxicology · doi:10.1007/s00204-011-0766-2 · Cited by 67
“Tube formation assay The endothelial tube formation assay was performed as described by Arnaoutova and co-workers (Arnaoutova and Kleinman 2010).”
EGFR/EGFRvIII Dual-Targeting Peptide-Mediated Drug Delivery for Enhanced Glioma Therapy
Mao, J., Ran, D., Xie, C., Shen, Q., Wang, S., & Lu, W. (2017) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.7b05617 · Cited by 64
Truskey, G. A. (2010) · International Journal of High Throughput Screening · doi:10.2147/ijhts.s13459 · Cited by 64
“In the high-throughput version of these assays, ECs are placed either above a thin gel of collagen I or II 77 or Matrigel, a tumor-derived basement membrane, 78 or in a well placed within the center of gel.”
A perfusable, vascularized kidney organoid-on-chip model
Kroll, K. T., Homan, K. A., Uzel, S. G. M., Mata, M. M., Wolf, K. J., Rubins, J. E., & Lewis, J. A. (2024) · Biofabrication · doi:10.1088/1758-5090/ad5ac0 · Cited by 68
“Endogenous endothelial (CD31 + ) cells are also present at the migrating cell front within the matrix between channels, where both individual cells and more chord-like structures are observed [29, 30].”
PI3K/AKT/PTEN Signaling as a Molecular Target in Leukemia Angiogenesis
Okumura, N., Yoshida, H., Kitagishi, Y., Murakami, M., Nishimura, Y., & Matsuda, S. (2012) · Advances in Hematology · doi:10.1155/2012/843085 · Cited by 62
“Hindawi Publishing Corporation Advances in Hematology Volume 2012, Article ID 843085, 6 pages doi:10.1155/2012/843085 Review Article PI3K/AKT/PTEN Signaling as a Molecular Target in Leukemia Angiogenesis Naoko Okumura, Hitomi Yoshida, Yasuko Kitagishi, Mutsumi Murakami, Yuri Nishimura, and Satoru…”
InfluentialHellevik, T., Pettersen, I., Berg, V., Bruun, J., Bartnes, K., Busund, L., Chalmers, A. J., Bremnes, R. M., & Martínez-Zubiaurre, I. (2013) · Translational Oncology · doi:10.1593/tlo.12349 · Cited by 62
“The formation of capillary-like structures was assessed in Matrigel-coated multiwell plates essentially as described [46].”
Peddibhotla, S. S. D., Brinkmann, B., Kummer, D., Tuncay, H., Nakayama, M., Adams, R. H., Gerke, V., & Ebnet, K. (2013) · Molecular Biology of the Cell · doi:10.1091/mbc.e12-06-0481 · Cited by 62
“In vitro tube formation assay In vitro tube formation assays were performed according to the protocol described by Arnaoutova and Kleinman (2010). Briefly, Cultrex basement membrane extract (BME) with reduced growth factors”
Netrin-4 promotes mural cell adhesion and recruitment to endothelial cells
Lejmi, E., Bouras, I., Camelo, S., Roumieux, M., Minet, N., Déan, C., Merkulova‐Rainon, T., Autret, G., Vayssettes, C., Clémеnt, O., et al. (2014) · Vascular Cell · doi:10.1186/2045-824x-6-1 · Cited by 61
“The in vitro angiogenesis assay was performed according to a previously published protocol [31].”
Editing VEGFR2 Blocks VEGF-Induced Activation of Akt and Tube Formation
Huang, X., Zhou, G., Wu, W., Ma, G., D'Amore, P. A., Mukai, S., & Lei, H. (2017) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.16-20537 · Cited by 61
“Experiments were performed a minimum of three times.(25,33,34)”
Metadata
- Authors
- Arnaoutova, I., & Kleinman, H. K.
- Affiliations
- Trevigen (US)
- National Institutes of Health (US)
- Corresponding author
- Arnaoutova, Irina
- Kleinman, Hynda K
- ORCID
- Kleinman, Hynda K
- Venue
- Nature Protocols
- Published
- 2010-03-11
- Volume
- 5
- Issue
- 4
- Pages
- 628-635
- ISSN
- 1750-2799 (ISSN-L)
- 1754-2189
- OpenAlex
- W2015186671
- Cited by
- 760
- References
- 35
- Citations by year
- 2026: 29 · 2025: 60 · 2024: 55 · 2023: 54 · 2022: 60 · 2021: 62 · 2020: 57 · 2019: 56 · 2018: 59 · 2017: 66 · 2016: 54 · 2015: 31 · 2014: 41 · 2013: 33 · 2012: 26
- FWCI
- 9.89
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Protocols (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Angiogenesis and VEGF in Cancer
- Health Sciences › Medicine › Immunology and Allergy › Cell Adhesion Molecules Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
- Keywords
- in vitro angiogenesis assay, endothelial tube formation, basement membrane extract, capillary-like structures, endothelial cell adhesion, endothelial cell migration, proteolytic activity, endothelial progenitor cells, angiogenesis inhibitors, high-throughput screening
- MeSH terms
- Basement Membrane, Capillaries, Cells, Cultured, Cytological Techniques, Gels, Humans, Neovascularization, Physiologic, Endothelial Cells, In Vitro Techniques
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