CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

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Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

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CRISPR RNA Maturation by Trans-Encoded Small RNA and Host Factor RNase III

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Evolution and classification of the CRISPR–Cas systems

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CRISPR/Cas, the Immune System of Bacteria and Archaea

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Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product

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Bacteriophage resistance mechanisms

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The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

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Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements

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Viruses in the sea

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

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Identification of genes that are associated with DNA repeats in prokaryotes

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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

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CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA

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Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

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Regulatory RNAs in Bacteria

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Short motif sequences determine the targets of the prokaryotic CRISPR defence system

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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

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CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies

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PIWI-interacting small RNAs: the vanguard of genome defence

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

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Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus

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Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

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RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex

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CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

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A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes

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The Marine Viromes of Four Oceanic Regions

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CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea

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Viral metagenomics

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The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

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Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus

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Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving VariationsPreprint

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A three-dimensional view of the molecular machinery of RNA interference

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Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

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Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease

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CRISPR/Cas System and Its Role in Phage-Bacteria Interactions

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Structural basis for CRISPR RNA-guided DNA recognition by Cascade

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Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotesPreprint

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CRISPR-based adaptive and heritable immunity in prokaryotes

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Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities

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RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions

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Evolutionary conservation of sequence and secondary structures in CRISPR repeats

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Cas3 is a single‐stranded DNA nuclease and ATP‐dependent helicase in the CRISPR/Cas immune system

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Multidrug-Resistant Enterococci Lack CRISPR- cas

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CRISPR-based adaptive immune systems

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Self-targeting by CRISPR: gene regulation or autoimmunity?

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Comparative analysis of CRISPR loci in lactic acid bacteria genomes

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Identification and characterization of E. coli CRISPR‐cas promoters and their silencing by H‐NS

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A dual function of the CRISPR–Cas system in bacterial antivirus immunity and DNA repair

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Structural Basis for DNase Activity of a Conserved Protein Implicated in CRISPR-Mediated Genome Defense

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Interaction between Bacteriophage DMS3 and Host CRISPR Region Inhibits Group Behaviors ofPseudomonas aeruginosa

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A putative viral defence mechanism in archaeal cells

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H‐NS‐mediated repression of CRISPR‐based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO

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The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella

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Prokaryotic silencing (psi)RNAs inPyrococcus furiosus

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Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector‐borne viral and plasmid genes and protospacers

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Transcription, processing and function of CRISPR cassettes in Escherichia coli

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CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

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Diversity of CRISPR loci in Escherichia coli

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Legionella pneumophila pangenome reveals strain-specific virulence factors

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Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

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Viral biogeography revealed by signatures in Sulfolobus islandicus genomes

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Germ Warfare in a Microbial Mat Community: CRISPRs Provide Insights into the Co-Evolution of Host and Viral Genomes

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The Escherichia coli CRISPR System Protects from λ Lysogenization, Lysogens, and Prophage Induction

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Identification of a Novel Family of Sequence Repeats among Prokaryotes

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RNA in Defense: CRISPRs Protect Prokaryotes against Mobile Genetic ElementsPreprint

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Insight into Microevolution of Yersinia pestis by Clustered Regularly Interspaced Short Palindromic Repeats

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CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection

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Non-Identity-Mediated CRISPR-Bacteriophage Interaction Mediated via the Csy and Cas3 Proteins

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Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars ofSalmonella entericasubsp.enterica

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Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage

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Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of ‘spoligotyping’ with new spacers and a microbead-based hybridization assay

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CRISPI: a CRISPR interactive database

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CRISPR-Cas: an adaptive immunity system in prokaryotes

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Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli

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