Genomic Islands in Pathogenic and Environmental Microorganisms

Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology

Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M., & Umbarger, H. E. (1987) · Cited by 4,097 · see citing works

Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology

Neidhardt, F. C., & Ingraham, J. L. (1987) · Medical Entomology and Zoology · Cited by 4,089 · see citing works

Escherichia coli and Salmonella typhimurium: Cellular and molecular biology

Lejeune, P. (1988) · Biochimie · doi:10.1016/0300-9084(88)90119-8 · Cited by 4,086 · see citing works

Lateral gene transfer and the nature of bacterial innovation

Ochman, H., Lawrence, J. G., & Groisman, E. A. (2000) · Nature · doi:10.1038/35012500 · Cited by 3,816 · see citing works

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

Bentley, S. D., Chater, K. F., Cerdeño-Tárraga, A. M., Challis, G. L., Thomson, N. R., James, K., Harris, D. E., Quail, M. A., Kieser, H. M., Harper, D., et al. (2002) · Nature · doi:10.1038/417141a · Cited by 3,226 · see citing works

Type III Protein Secretion Systems in Bacterial Pathogens of Animals and Plants

Hueck, C. J. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.2.379-433.1998 · Cited by 2,384 · see citing works

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

Perna, N. T., Plunkett, G., Burland, V., Mau, B., Glasner, J. D., Rose, D. J., Mayhew, G. F., Evans, P. S., Gregor, J., Kirkpatrick, H. A., et al. (2001) · Nature · doi:10.1038/35054089 · Cited by 2,035 · see citing works

Whole genome sequencing of meticillin-resistant Staphylococcus aureus

Kuroda, M., Ohta, T., Uchiyama, I., Baba, T., Yuzawa, H., Kobayashi, I., Cui, L., Oguchi, A., Aoki, K.-I., Nagai, Y., et al. (2001) · The Lancet · doi:10.1016/s0140-6736(00)04403-2 · Cited by 1,950 · see citing works

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

Heidelberg, J. F., Eisen, J. A., Nelson, W. C., Clayton, R. A., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Umayam, L. A., et al. (2000) · Nature · doi:10.1038/35020000 · Cited by 1,871 · see citing works

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli

Welch, R. A., Burland, V., Plunkett, G., Redford, P., Roesch, P. L., Rasko, D. A., Buckles, E. L., Liou, S., Boutin, A., Hackett, J. D., et al. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.252529799 · Cited by 1,523 · see citing works

Complete Genome Sequence of Enterohemorrhagic Eschelichia coli O157:H7 and Genomic Comparison with a Laboratory Strain K-12

Hayashi, T. (2001) · DNA Research · doi:10.1093/dnares/8.1.11 · Cited by 1,266 · see citing works

Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

Ikeda, H., Ishikawa, J., Hanamoto, A., SHINOSE, M., Kikuchi, H., Shiba, T., Sakaki, Y., Hattori, M., & Ōmura, S. (2003) · Nature Biotechnology · doi:10.1038/nbt820 · Cited by 1,238 · see citing works

SOS response promotes horizontal dissemination of antibiotic resistance genes

Beaber, J. W., Hochhut, B., & Waldor, M. K. (2004) · Nature · doi:10.1038/nature02241 · Cited by 1,186 · see citing works

The Composite Genome of the Legume Symbiont Sinorhizobium meliloti

Galibert, F., Finan, T. M., Long, S. R., Pühler, A., Abola, A. P., Ampe, F., Barloy-Hubler, F., Barnett, M. J., Becker, A., Boistard, P., et al. (2001) · Science · doi:10.1126/science.1060966 · Cited by 1,181 · see citing works

Structural Comparison of Three Types of Staphylococcal Cassette Chromosome mec Integrated in the Chromosome in Methicillin-Resistant Staphylococcus aureus

Ito, T., Katayama, Y., Asada, K., Mori, N., Tsutsumimoto, K., Tiensasitorn, C., & Hiramatsu, K. (2001) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.45.5.1323-1336.2001 · Cited by 964 · see citing works

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

Paulsen, I. T., Banerjei, L., Myers, G. S. A., Nelson, W. C., Seshadri, R., Read, T. D., Fouts, D. E., Eisen, J. A., Gill, S. R., Heidelberg, J. F., et al. (2003) · Science · doi:10.1126/science.1080613 · Cited by 930 · see citing works

Complete Genomic Sequence of Nitrogen-fixing Symbiotic Bacterium Bradyrhizobium japonicum USDA110

Kaneko, T. (2002) · DNA Research · doi:10.1093/dnares/9.6.189 · Cited by 859 · see citing works

Complete Genome Structure of the Nitrogen-fixing Symbiotic Bacterium Mesorhizobium loti

Kaneko, T. (2000) · DNA Research · doi:10.1093/dnares/7.6.331 · Cited by 833 · see citing works

Pathogenicity Islands in BacterialPathogenesis

Schmidt, H., & Hensel, M. (2004) · Clinical Microbiology Reviews · doi:10.1128/cmr.17.1.14-56.2004 · Cited by 776 · see citing works

Molecular basis of symbiosis between Rhizobium and legumes

Freiberg, C., Fellay, R., Bairoch, A., Broughton, W. J., Rosenthal, A., & Perret, X. (1997) · Nature · doi:10.1038/387394a0 · Cited by 764 · see citing works

Microbial minimalism: genome reduction in bacterial pathogens.

Moran, N. (2002) · Cell · doi:10.1016/s0092-8674(02)00665-7 · Cited by 746 · see citing works

SalmonellaInteractions with Host Cells: Type III Secretion at Work

Galán, J. E. (2001) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.17.1.53 · Cited by 730 · see citing works

The versatile bacterial type IV secretion systems

Cascalès, E., & Christie, P. J. (2003) · Nature Reviews Microbiology · doi:10.1038/nrmicro753 · Cited by 695 · see citing works

Selfish Operons: Horizontal Transfer May Drive the Evolution of Gene Clusters

Lawrence, J. G., & Roth, J. R. (1996) · Genetics · doi:10.1093/genetics/143.4.1843 · Cited by 680 · see citing works

Ecological fitness, genomic islands and bacterial pathogenicity

Hacker, J. H., & Carniel, É. (2001) · EMBO Reports · doi:10.1093/embo-reports/kve097 · Cited by 622 · see citing works

A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles

Piel, J. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.222481399 · Cited by 609 · see citing works

Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene

Sullivan, J. T., & Ronson, C. W. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.9.5145 · Cited by 603 · see citing works

The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens

Duchaud, É., Rusniok, C., Frangeul, L., Buchrieser, C., Givaudan, A., Taourit, S., Bocs, S., Boursaux‐Eude, C., Chandler, M., Charles, J., et al. (2003) · Nature Biotechnology · doi:10.1038/nbt886 · Cited by 594 · see citing works

Genes Lost and Genes Found: Evolution of Bacterial Pathogenesis and Symbiosis

Ochman, H., & Moran, N. A. (2001) · Science · doi:10.1126/science.1058543 · Cited by 566 · see citing works

Lack of a role for iron in the Lyme disease pathogen

Posey, J. E., & Gherardini, F. C. (2000) · Science · doi:10.1126/science.288.5471.1651 · Cited by 538 · see citing works

Reductive genome evolution in Buchnera aphidicola

van Ham, R. V., Kamerbeek, J., Palacios, C., Rausell, C., Abascal, F., Bastolla, U., Fernández, J. M., Jimenez, L., Postigo, M., Silva, F. J., et al. (2003) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.0235981100 · Cited by 526 · see citing works

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533

Pridmore, R. D., Berger, B. W., Desiere, F., Vilanova, D., Barretto, C., Pittet, A.-C., Zwahlen, M.-C., Rouvet, M., Altermann, E., Barrangou, R., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307327101 · Cited by 485 · see citing works

“Black holes” and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli

Maurelli, A. T., Fernández, R. E., Bloch, C. A., Rode, C. K., & Fasano, A. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.7.3943 · Cited by 457 · see citing works

Cloning and Nucleotide Sequence Determination of the Entire mec DNA of Pre-Methicillin-Resistant Staphylococcus aureus N315

Ito, T., Katayama, Y., & Hiramatsu, K. (1999) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.43.6.1449 · Cited by 451 · see citing works

Conjugative transposons: the tip of the iceberg

Burrus, V., Pavlovic, G., Decaris, B., & Guédon, G. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2002.03191.x · Cited by 436 · see citing works

Evolutionary genomics of Staphylococcus aureus : Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic

Fitzgerald, J. R., Sturdevant, D. E., Mackie, S. M., Gill, S. R., & Musser, J. M. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.161098098 · Cited by 434 · see citing works

Complete Nucleotide Sequence of a 43-Kilobase Genomic Island Associated with the Multidrug Resistance Region of<i>Salmonella enterica</i>Serovar Typhimurium DT104 and Its Identification in Phage Type DT120 and Serovar Agona

Boyd, D., Peters, G. A., Cloeckaert, A., Boumedine, K. S., Chaslus-Dancla, E., Imberechts, H., & Mulvey, M. R. (2001) · Journal of Bacteriology · doi:10.1128/jb.183.19.5725-5732.2001 · Cited by 414 · see citing works

Modulation of virulence within a pathogenicity island in vancomycin-resistant Enterococcus faecalis

Shankar, N., Baghdayan, A. S., & Gilmore, M. S. (2002) · Nature · doi:10.1038/nature00802 · Cited by 393 · see citing works

Giant plasmid-encoded polyketide synthases produce the macrolide toxin of Mycobacterium ulcerans

Stinear, T. P., Mve-Obiang, A., Small, P. L. C., Frigui, W., Pryor, M. J., Brosch, R., Jenkin, G., Johnson, P. D. R., Davies, J. K., Lee, R. E., Jr., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0305877101 · Cited by 390 · see citing works

Prevalence of the “High-Pathogenicity Island” of Yersinia Species among Escherichia coli Strains That Are Pathogenic to Humans

Schubert, S., Rakin, A., Karch, H., Carniel, É., & Heesemann, J. (1998) · Infection and Immunity · doi:10.1128/iai.66.2.480-485.1998 · Cited by 387 · see citing works

Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved

Boyd, E. F., & Brüssow, H. (2002) · Trends in Microbiology · doi:10.1016/s0966-842x(02)02459-9 · Cited by 381 · see citing works

The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds

Top, E. M., & Springael, D. (2003) · Current Opinion in Biotechnology · doi:10.1016/s0958-1669(03)00066-1 · Cited by 350 · see citing works

Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021

Capela, D., Barloy-Hubler, F., Gouzy, J., Bothe, G., Ampe, F., Batut, J., Boistard, P., Becker, A., Boutry, M., Cadieu, É., et al. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.161294398 · Cited by 338 · see citing works

Complete Genome Sequence of an Aerobic Thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7

Kawarabayasi, Y. (2001) · DNA Research · doi:10.1093/dnares/8.4.123 · Cited by 327 · see citing works

Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid

Barnett, M. J., Fisher, R. F., Jones, T., Komp, C., Abola, A. P., Barloy-Hubler, F., Bowser, L., Capela, D., Galibert, F., Gouzy, J., et al. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.161294798 · Cited by 324 · see citing works

Comparative Sequence Analysis of the Symbiosis Island ofMesorhizobium lotiStrain R7A

Sullivan, J. T., Trzebiatowski, J. R., Cruickshank, R. W., Gouzy, J., Brown, S. D., Elliot, R., Fleetwood, D. J., Holmes, N., Rossbach, U., Stuart, G. S., et al. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.11.3086-3095.2002 · Cited by 323 · see citing works

The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA.

Schleper, C., Kubo, K., & Zillig, W. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.16.7645 · Cited by 269 · see citing works

Analysis of Genome Plasticity in Pathogenic and Commensal Escherichia coli Isolates by Use of DNA Arrays

Dobrindt, U., Agerer, F., Michaelis, K., Janka, A., Buchrieser, C., Samuelson, M., Svanborg, C., Gottschalk, G., Karch, H., & Hacker, J. H. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.6.1831-1840.2003 · Cited by 262 · see citing works

A role for bacteriophages in the evolution and transfer of bacterial virulence determinants

Cheetham, B. F., & Katz, M. E. (1995) · Molecular Microbiology · doi:10.1111/j.1365-2958.1995.mmi_18020201.x · Cited by 255 · see citing works

Genomic and Functional Analyses of SXT, an Integrating Antibiotic Resistance Gene Transfer Element Derived from <i>Vibrio cholerae</i>

Beaber, J. W., Hochhut, B., & Waldor, M. K. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.15.4259-4269.2002 · Cited by 248 · see citing works

Photorhabdus: towards a functional genomic analysis of a symbiont and pathogen

ffrench‐Constant, R. H., Waterfield, N. R., Daborn, P. J., Joyce, S. A., Bennett, H. P. J., Au, C. P. Y., Dowling, A. J., Boundy, S., Reynolds, S. E., & Clarke, D. J. (2003) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2003.tb00625.x · Cited by 243 · see citing works

Getting across—bacterial type III effector proteins on their way to the plant cell

Büttner, D., & Bonas, U. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf536 · Cited by 238 · see citing works

Comparative Analysis of Superintegrons: Engineering Extensive Genetic Diversity in the VibrionaceaePreprint

Rowe‐Magnus, D. A., Guérout, A.-M., Biskri, L., Bouige, P., & Mazel, D. (2003) · Genome Research · doi:10.1101/gr.617103 · Cited by 224 · see citing works

Characterization of a Spontaneous Nonmagnetic Mutant of Magnetospirillum gryphiswaldense Reveals a Large Deletion Comprising a Putative Magnetosome Island

Schübbe, S., Kube, M., Scheffel, A., Wawer, C., Heyen, U., Meyerdierks, A., Madkour, M. H., Mayer, F., Reinhardt, R., & Schüler, D. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.19.5779-5790.2003 · Cited by 216 · see citing works

Complete genome sequence and analysis of Wolinella succinogenes

Baar, C., Eppinger, M., Raddatz, G., Simon, J., Lanz, C., Klimmek, O., Nandakumar, R., Groß, R., Rosinus, A., Keller, H., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1932838100 · Cited by 213 · see citing works

Characterization of a large chromosomal "high-pathogenicity island" in biotype 1B Yersinia enterocolitica

Carniel, É., Guilvout, I., & Prentice, M. B. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.23.6743-6751.1996 · Cited by 205 · see citing works

Evolution of a metabolic pathway for degradation of a toxic xenobiotic: the patchwork approach

Copley, S. D. (2000) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)01562-0 · Cited by 191 · see citing works

Rhizobium type III secretion systems: legume charmers or alarmers?

Marie, C., Broughton, W. J., & Deakin, W. J. (2001) · Current Opinion in Plant Biology · doi:10.1016/s1369-5266(00)00182-5 · Cited by 186 · see citing works

Complete Nucleotide Sequence of pHG1: A Ralstonia eutropha H16 Megaplasmid Encoding Key Enzymes of H2-based Lithoautotrophy and Anaerobiosis

Schwartz, E., Henne, A., Cramm, R., Eitinger, T., Friedrich, B., & Gottschalk, G. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00894-5 · Cited by 176 · see citing works

Molecular genetics of methicillin-resistant Staphylococcus aureus

Hiramatsu, K., Katayama, Y., Yuzawa, H., & Ito, T. (2002) · International Journal of Medical Microbiology · doi:10.1078/1438-4221-00192 · Cited by 168 · see citing works

Genomic islands and the evolution of catabolic pathways in bacteria

van der Meer, J. R., & Sentchilo, V. (2003) · Current Opinion in Biotechnology · doi:10.1016/s0958-1669(03)00058-2 · Cited by 162 · see citing works

The mosaic structure of the symbiotic plasmid of Rhizobium etliCFN42 and its relation to other symbiotic genome compartments

González, V., Bustos, P., Ramírez‐Romero, M. A., Medrano-Soto, A., Salgado, H., Hernández-González, I., Hernández-Celis, J. C., Quintero‐Hernández, V., Moreno‐Hagelsieb, G., Girard, L., et al. (2003) · Genome biology · doi:10.1186/gb-2003-4-6-r36 · Cited by 159 · see citing works

The Yersinia high-pathogenicity island is present in different members of the family Enterobacteriaceae

Bach, S., de Almeida, A. M. P., & Carniel, É. (2000) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2000.tb08973.x · Cited by 159 · see citing works

R391: a Conjugative Integrating Mosaic Comprised of Phage, Plasmid, and Transposon Elements

Böltner, D., MacMahon, C., Pembroke, J. T., Strike, P., & Osborn, A. M. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.18.5158-5169.2002 · Cited by 157 · see citing works

Chromosomal Integration, Tandem Amplification, and Deamplification in Pseudomonas putida F1 of a 105-Kilobase Genetic Element Containing the Chlorocatechol Degradative Genes from Pseudomonas sp. Strain B13

Ravatn, R., Studer, S., Springael, D., Zehnder, A. J. B., & van der Meer, J. R. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.17.4360-4369.1998 · Cited by 154 · see citing works

Gene Islands Integrated into tRNA Gly Genes Confer Genome Diversity on a Pseudomonas aeruginosa Clone

Larbig, K. D., Christmann, A., Johann, A., Klockgether, J., Hartsch, T., Merkl, R., Wiehlmann, L., Fritz, H., & Tümmler, B. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.23.6665-6680.2002 · Cited by 153 · see citing works

The endosymbionts of tsetse flies: manipulating host–parasite interactions

Dale, C., & Welburn, S. C. (2001) · International Journal for Parasitology · doi:10.1016/s0020-7519(01)00151-5 · Cited by 149 · see citing works

Pathogenicity islands: the tip of the iceberg

Hentschel, U., & Hacker, J. H. (2001) · Microbes and Infection · doi:10.1016/s1286-4579(01)01410-1 · Cited by 139 · see citing works

A Darwinian view of the evolution of microbes

Hacker, J. H., & Carniel, É. (2001) · Cited by 138 · see citing works

Molecular Evolution of Aromatic Polyketides and Comparative Sequence Analysis of Polyketide Ketosynthase and 16S Ribosomal DNA Genes from Various Streptomyces Species

Metsä‐Ketelä, M., Halo, L. M., Munukka, E., Hakala, J. M. L., Mäntsälä, P., & Ylihonko, K. P. J. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.9.4472-4479.2002 · Cited by 133 · see citing works

Evidence for a Symbiosis Island Involved in Horizontal Acquisition of Pederin Biosynthetic Capabilities by the Bacterial Symbiont of Paederus fuscipes Beetles

Piel, J., Höfer, I., & Hui, D. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.5.1280-1286.2004 · Cited by 132 · see citing works

A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating

Schleper, C., Holz, I., Janekovic, D., Murphy, J., & Zillig, W. (1995) · Journal of Bacteriology · doi:10.1128/jb.177.15.4417-4426.1995 · Cited by 129 · see citing works

Global features of the Pseudomonas putida KT2440 genome sequence

Weinel, C., Nelson, K. E., & Tümmler, B. (2002) · Environmental Microbiology · doi:10.1046/j.1462-2920.2002.00331.x · Cited by 125 · see citing works

Ferric Dicitrate Transport System (Fec) of Shigella flexneri 2a YSH6000 Is Encoded on a Novel Pathogenicity Island Carrying Multiple Antibiotic Resistance Genes

Luck, S. N., Turner, S. A., Rajakumar, K., Sakellaris, H., & Adler, B. (2001) · Infection and Immunity · doi:10.1128/iai.69.10.6012-6021.2001 · Cited by 120 · see citing works

Genetic profile of pNOB8 from Sulfolobus : the first conjugative plasmid from an archaeon

She, Q., Phan, H., Garrett, R. A., Albers, S., Stedman, K. M., & Zillig, W. (1998) · Extremophiles · doi:10.1007/s007920050087 · Cited by 114 · see citing works

The Biphenyl- and 4-Chlorobiphenyl-Catabolic Transposon Tn 4371 , a Member of a New Family of Genomic Islands Related to IncP and Ti Plasmids

Toussaint, A., Merlin, C., Monchy, S., Benotmane, M. A., Leplae, R., Mergeay, M., & Springael, D. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.8.4837-4845.2003 · Cited by 103 · see citing works

Plasmid‐mediated sucrose metabolism in Escherichia coli K12: mapping of the scr genes of pUR400

Schmid, K. W., Ebner, R., Altenbuchner, J., Schmitt, R., & Lengeler, J. W. (1988) · Molecular Microbiology · doi:10.1111/j.1365-2958.1988.tb00001.x · Cited by 96 · see citing works

A Genomic Sample Sequence of the Entomopathogenic Bacterium Photorhabdus luminescens W14: Potential Implications for Virulence

ffrench‐Constant, R. H., Waterfield, N. R., Burland, V., Perna, N. T., Daborn, P. J., Bowen, D. J., & Blattner, F. R. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.8.3310-3329.2000 · Cited by 93 · see citing works

CTnscr94, a conjugative transposon found in enterobacteria

Hochhut, B., Jahreis, K., Lengeler, J. W., & Schmid, K. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.7.2097-2102.1997 · Cited by 92 · see citing works

A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high‐pathogenicity island

Schubert, S., Dufke, S., Sorsa, J., & Heesemann, J. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03870.x · Cited by 92 · see citing works

Bacterial genomics and adaptation to life on plants: implications for the evolution of pathogenicity and symbiosis

Preston, G. M., Haubold, B., & Rainey, P. B. (1998) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(98)80094-5 · Cited by 77 · see citing works

The Yersinia Ysc-Yop virulence apparatus

Cornelis, G. R. (2001) · International Journal of Medical Microbiology · doi:10.1078/1438-4221-00153 · Cited by 76 · see citing works

Phylogeny of Streptomyces species and evidence for horizontal transfer of entire and partial antibiotic gene clusters

Egan, S. A., Wiener, P., Kallifidas, D., & Wellington, E. M. H. (2001) · Antonie van Leeuwenhoek · doi:10.1023/a:1010296220929 · Cited by 73 · see citing works

Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia

Müller, T., Werlen, C., Spain, J. C., & van der Meer, J. R. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00400.x · Cited by 67 · see citing works

Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the crenarchaeon Sulfolobus solfataricus

Peng, X., Holz, I., Zillig, W., Garrett, R. A., & She, Q. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4160 · Cited by 65 · see citing works

Community shifts in a seeded 3‐chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc ‐element from inoculum to contaminant bacteria

Springael, D., Peys, K., Ryngaert, A., Roy, S. V., Hooyberghs, L., Ravatn, R., Heyndrickx, M., van der Meer, J., Vandecasteele, C., Mergeay, M., et al. (2002) · Environmental Microbiology · doi:10.1046/j.1462-2920.2002.00267.x · Cited by 54 · see citing works

The High-Pathogenicity Island Is Absent in Human Pathogens of Salmonella enterica Subspecies I but Present in Isolates of Subspecies III and VI

Oelschlaeger, T. A., Zhang, D., Schubert, S., Carniel, É., Rabsch, W., Karch, H., & Hacker, J. H. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.3.1107-1111.2003 · Cited by 53 · see citing works

Pathogenicity Islands and the Evolution of Pathogenic Microbes

(2002) · Current topics in microbiology and immunology · doi:10.1007/978-3-642-56031-6 · Cited by 51 · see citing works

Transfer of Streptomycin Biosynthesis Gene Clusters within Streptomycetes Isolated from Soil

Egan, S. A., Wiener, P., Kallifidas, D., & Wellington, E. M. H. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.12.5061-5063.1998 · Cited by 51 · see citing works

Genome Plasticity in Pathogenic and Nonpathogenic Enterobacteria

Dobrindt, U., Hentschel, U., Kaper, J. B., & Hacker, J. H. (2002) · Current topics in microbiology and immunology · doi:10.1007/978-3-662-09217-0_9 · Cited by 51 · see citing works

The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gramnegative mer operons

Osborn, A. M., Bruce, K. D., Ritchie, D. A., & Strike, P. (1996) · Microbiology · doi:10.1099/13500872-142-2-347 · Cited by 50 · see citing works

Molecular Epidemiology of the SRL Pathogenicity Island

Turner, S. A., Luck, S. N., Sakellaris, H., Rajakumar, K., & Adler, B. (2003) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.47.2.727-734.2003 · Cited by 38 · see citing works

Site-Specific Recombination with the Chromosomal tRNA Leu Gene by the Large Conjugative Haemophilus Resistance Plasmid

Dimopoulou, I. D., Russell, J. E., Mohd-Zain, Z., Herbert, R., & Crook, D. W. (2002) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.46.5.1602-1603.2002 · Cited by 37 · see citing works

Naturally mosaic operons for secondary metabolite biosynthesis: variability and putative horizontal transfer of discrete catalytic domains of the epothilone polyketide synthase locus

Lopez, J. V. (2003) · Molecular Genetics and Genomics · doi:10.1007/s00438-003-0937-9 · Cited by 36 · see citing works

Identification of genomic islands in the genome ofBacillus cereusby comparative analysis withBacillus anthracis

Zhang, R., & Zhang, C. (2003) · Physiological Genomics · doi:10.1152/physiolgenomics.00170.2003 · Cited by 32 · see citing works

Identification of a ChromosomalShigella flexneriMulti-Antibiotic Resistance Locus Which Shares Sequence and Organizational Similarity with the Resistance Region of the Plasmid NR1

Rajakumar, K., Bulach, D., Davies, J., Ambrose, L., Sasakawa, C., & Adler, B. (1997) · Plasmid · doi:10.1006/plas.1997.1280 · Cited by 31 · see citing works

Mapping of the sor genes for l-sorbose degradation in the chromosome of Klebsiella pneumoniae

Sprenger, G. A., & Lengeler, J. W. (1987) · Molecular and General Genetics MGG · doi:10.1007/bf00329665 · Cited by 20 · see citing works

Targeting clusters of transferred genes in Thermotoga maritima

Nesbø, C. L., & Doolittle, W. F. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00515.x · Cited by 19 · see citing works

The Leopoldina international symposium on parasitism, commensalism and symbiosis – common themes, different outcome

Gross, R., Hacker, J. H., & Goebel, W. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03443.x · Cited by 10 · see citing works

Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

Rizzo, L., Manaia, C., Merlin, C., Schwartz, T., Dagot, C., Ploy, M. C., Michael, I., & Fatta-Kassinos, D. (2013) · Science of The Total Environment · doi:10.1016/j.scitotenv.2013.01.032 · Cited by 2,493 · see citing works

Antimicrobial Resistance in ESKAPE Pathogens

Oliveira, D. M. P. D., Forde, B. M., Kidd, T. J., Harris, P. N. A., Schembri, M. A., Beatson, S. A., Paterson, D. L., & Walker, M. J. (2020) · Clinical Microbiology Reviews · doi:10.1128/cmr.00181-19 · Cited by 2,149 · see citing works

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

Görke, B., & Stülke, J. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1932 · Cited by 1,701 · see citing works

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

Bertelli, C., Laird, M. R., Williams, K. P., Lau, B. Y., Hoad, G. R., Winsor, G. L., & Brinkman, F. S. L. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx343 · Cited by 1,535 · see citing works

The microbial pan-genome

Medini, D., Donati, C., Tettelin, H., Masignani, V., & Rappuoli, R. (2005) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2005.09.006 · Cited by 1,307 · see citing works

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

Touchon, M., Hoede, C., Tenaillon, O., Barbe, V., Baeriswyl, S., Bidet, P., Bingen, É., Bonacorsi, S., Bouchier, C., Bouvet, O. M. M., et al. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000344 · Cited by 1,177 · see citing works

Horizontal gene transfer, genome innovation and evolution

Gogarten, J. P., & Townsend, J. P. (2005) · Nature Reviews Microbiology · doi:10.1038/nrmicro1204 · Cited by 1,010 · see citing works

Genomic islands: tools of bacterial horizontal gene transfer and evolution

Juhas, M., van der Meer, J. R., Gaillard, M., Harding, R. M., Hood, D. W., & Crook, D. W. (2009) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2008.00136.x · Cited by 980 · see citing works

Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii

Fournier, P., Vallenet, D., Barbe, V., Audic, S., Ogata, H., Poirel, L., Richet, H., Robert, C., Mangenot, S., Abergel, C., et al. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020007 · Cited by 809 · see citing works

Cyanobacterial peptides — Nature's own combinatorial biosynthesis

Welker, M., & von Döhren, H. (2006) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2006.00022.x · Cited by 780 · see citing works

The rhizosphere as a reservoir for opportunistic human pathogenic bacteria

Berg, G., Eberl, L., & Hartmann, A. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00891.x · Cited by 716 · see citing works

Bacterial insertion sequences: their genomic impact and diversity

Siguier, P., Gourbeyre, E., & Chandler, M. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12067 · Cited by 713 · see citing works

The population genetics of pathogenic Escherichia coli

Denamur, É., Clermont, O., Bonacorsi, S., & Gordon, D. M. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0416-x · Cited by 674 · see citing works

Genomic insights into the marine sponge microbiome

Hentschel, U., Piel, J., Degnan, S. M., & Taylor, M. W. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2839 · Cited by 659 · see citing works

Survival of Escherichia coli in the environment: fundamental and public health aspects

van Elsas, J. D., Semenov, A. V., Costa, R., & Trevors, J. T. (2010) · The ISME Journal · doi:10.1038/ismej.2010.80 · Cited by 653 · see citing works

Genomics of secondary metabolite production by Pseudomonas spp.

Gross, H., & Loper, J. E. (2009) · Natural Product Reports · doi:10.1039/b817075b · Cited by 627 · see citing works

Molecular Pathogenesis of Shigella spp.: Controlling Host Cell Signaling, Invasion, and Death by Type III Secretion

Schroeder, G. N., & Hilbi, H. (2008) · Clinical Microbiology Reviews · doi:10.1128/cmr.00032-07 · Cited by 615 · see citing works

Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogens

Stokes, H. W., & Gillings, M. R. (2011) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2011.00273.x · Cited by 613 · see citing works

Mobile genetic elements of Staphylococcus aureus

Małachowa, N., & DeLeo, F. R. (2010) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-010-0389-4 · Cited by 566 · see citing works

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

Sittka, A., Lucchini, S., Papenfort, K., Sharma, C. M., Rolle, K., Binnewies, T. T., Hinton, J. C. D., & Vogel, J. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000163 · Cited by 563 · see citing works

Magnetosome biogenesis in magnetotactic bacteria

Uebe, R., & Schüler, D. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.99 · Cited by 537 · see citing works

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

Kashtan, N., Roggensack, S. E., Rodrigue, S., Berta-Thompson, J. W., Biller, S. J., Coe, A., Ding, H., Marttinen, P., Malmstrom, R. R., Stocker, R., et al. (2014) · Science · doi:10.1126/science.1248575 · Cited by 526 · see citing works

Conjugative plasmids: vessels of the communal gene pool

Norman, A., Hansen, L. H., & Sørensen, S. J. (2009) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2009.0037 · Cited by 519 · see citing works

Anaerobic Catabolism of Aromatic Compounds: a Genetic and Genomic View

Carmona, M., Zamarro, M. T., Blázquez, B., Durante‐Rodríguez, G., Juárez, J. F., Valderrama, J. A., Barragán, M. J. L., García, J. L., & Dı́az, E. (2009) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00021-08 · Cited by 475 · see citing works

Methicillin-Resistant Staphylococcus aureus: An Evolutionary, Epidemiologic, and Therapeutic Odyssey

Deresinski, S. C. (2005) · Clinical Infectious Diseases · doi:10.1086/427701 · Cited by 465 · see citing works

Ecology, Diversity, and Evolution of Magnetotactic Bacteria

Lefèvre, C. T., & Bazylinski, D. A. (2013) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00021-13 · Cited by 448 · see citing works

Comparative Genome Sequence Analysis of Multidrug-Resistant Acinetobacter baumannii

Adams, M. D., Goglin, K. C., Molyneaux, N., Hujer, K. M., Lavender, H. F., Jamison, J. J., MacDonald, I. J., Martin, K. M., Russo, T. A., Campagnari, A. A., et al. (2008) · Journal of Bacteriology · doi:10.1128/jb.00834-08 · Cited by 434 · see citing works

Evolutionary microbial genomics: insights into bacterial host adaptation

Toft, C., & Andersson, S. G. E. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2798 · Cited by 424 · see citing works

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

Fraser, C., Alm, E. J., Polz, M. F., Spratt, B. G., & Hanage, W. P. (2009) · Science · doi:10.1126/science.1159388 · Cited by 410 · see citing works

Bacterial Genome Instability

Darmon, E., & Leach, D. R. F. (2014) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00035-13 · Cited by 409 · see citing works

Anti-CRISPR: discovery, mechanism and function

Pawluk, A., Davidson, A. R., & Maxwell, K. L. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.120 · Cited by 398 · see citing works

Enterotoxigenic Escherichia coli in veterinary medicine

Nagy, B., & Fekete, P. Z. (2005) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2005.07.003 · Cited by 396 · see citing works

Rethinking Crop Nutrition in Times of Modern Microbiology: Innovative Biofertilizer Technologies

Mitter, E. K., Tosi, M., Obregón, D., Dunfield, K. E., & Germida, J. J. (2021) · Frontiers in Sustainable Food Systems · doi:10.3389/fsufs.2021.606815 · Cited by 392 · see citing works

Microcins, gene-encoded antibacterial peptides from enterobacteria

Duquesne, S., Destoumieux‐Garzón, D., Péduzzi, J., & Rebuffat, S. (2007) · Natural Product Reports · doi:10.1039/b516237h · Cited by 389 · see citing works

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

Langille, M. G. I., & Brinkman, F. S. L. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp030 · Cited by 386 · see citing works

The Ecology and Evolution of Pangenomes

Brockhurst, M. A., Harrison, E., Hall, J. P. J., Richards, T., McNally, A., & MacLean, C. (2019) · Current Biology · doi:10.1016/j.cub.2019.08.012 · Cited by 385 · see citing works

The Repertoire of ICE in Prokaryotes Underscores the Unity, Diversity, and Ubiquity of Conjugation

Guglielmini, J., Quintais, L. T., Garcillán-Barcia, M. P., de la Cruz, F., & Rocha, E. P. C. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002222 · Cited by 382 · see citing works

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

Barbe, V., Cruveiller, S., Kunst, F., Lenoble, P., Meurice, G., Sekowska, A., Vallenet, D., Wang, T., Moszer, I., Médigue, C., et al. (2009) · Microbiology · doi:10.1099/mic.0.027839-0 · Cited by 379 · see citing works

Conjugative and mobilizable genomic islands in bacteria: evolution and diversity

Bellanger, X., Payot, S., Leblond‐Bourget, N., & Guédon, G. (2013) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12058 · Cited by 372 · see citing works

Freshwater environments as reservoirs of antibiotic resistant bacteria and their role in the dissemination of antibiotic resistance genes

Nnadozie, C. F., & Odume, O. N. (2019) · Environmental Pollution · doi:10.1016/j.envpol.2019.113067 · Cited by 367 · see citing works

E. coli as an All-Rounder: The Thin Line Between Commensalism and Pathogenicity

Leimbach, A., Hacker, J. H., & Dobrindt, U. (2013) · Current topics in microbiology and immunology · doi:10.1007/82_2012_303 · Cited by 366 · see citing works

Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501

Yan, Y., Yang, J., Dou, Y., Chen, M., Ping, S., Peng, J., Lü, W., Zhang, W., Yao, Z., Li, H., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0801093105 · Cited by 365 · see citing works

Evolutionary Implications of Bacterial Polyketide Synthases

Jenke‐Kodama, H., Sandmann, A., Müller, R., & Dittmann, E. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi193 · Cited by 362 · see citing works

Pseudomonas aeruginosa Genomic Structure and Diversity

Klockgether, J., Cramer, N., Wiehlmann, L., Davenport, C., & Tümmler, B. (2011) · Frontiers in Microbiology · doi:10.3389/fmicb.2011.00150 · Cited by 355 · see citing works

Microbes and Microbial Technology

Ahmad, I., Ahmed, F. K., & Pichtel, J. (2011) · Springer eBooks · doi:10.1007/978-1-4419-7931-5 · Cited by 353 · see citing works

Microbiology in the post-genomic era

Medini, D., Serruto, D., Parkhill, J., Relman, D. A., Donati, C., Moxon, R. E., Falkow, S., & Rappuoli, R. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1901 · Cited by 351 · see citing works

Surface Proteins ofStreptococcus agalactiaeand Related Proteins in Other Bacterial Pathogens

Lindahl, G., Stålhammar‐Carlemalm, M., & Areschoug, T. (2005) · Clinical Microbiology Reviews · doi:10.1128/cmr.18.1.102-127.2005 · Cited by 349 · see citing works

Bacterial pathogenomics

Pallen, M. J., & Wren, B. W. (2007) · Nature · doi:10.1038/nature06248 · Cited by 349 · see citing works

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic BacteriumXanthomonas campestrispv. vesicatoria Revealed by the Complete Genome Sequence

Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Büttner, D., Caldana, C., Gaigalat, L., Goesmann, A., Kay, S., et al. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.21.7254-7266.2005 · Cited by 346 · see citing works

How to become a uropathogen: Comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains

Brzuszkiewicz, E., Brüggemann, H., Liesegang, H., Emmerth, M., Ölschläger, T., Nagy, G., Albermann, K., Wagner, C., Buchrieser, C., Emödy, L., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0603038103 · Cited by 346 · see citing works

Escherichia coli : an old friend with new tidings

Vilà, J., Sáez-López, E., Johnson, J. R., Römling, U., Dobrindt, U., Cantón, R., Giske, C. G., Naas, T., Carattoli, A., Martínez-Medina, M., et al. (2016) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuw005 · Cited by 342 · see citing works

The Accessory Genome of Pseudomonas aeruginosa

Kung, V. L., Ozer, E. A., & Hauser, A. R. (2010) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00027-10 · Cited by 340 · see citing works

Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands

Vercoe, R. B., Chang, J. T., Dy, R. L. V., Taylor, C., Gristwood, T., Clulow, J. S., Richter, C., Przybilski, R., Pitman, A. R., & Fineran, P. C. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003454 · Cited by 335 · see citing works

Linking the emergence of fungal plant diseases with ecological speciation

Giraud, T., Gladieux, P., & Gavrilets, S. (2010) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2010.03.006 · Cited by 323 · see citing works

Evolution in Health and Disease

(2007) · doi:10.1093/acprof:oso/9780199207466.001.0001 · Cited by 322 · see citing works

Genetic Structure and Distribution of the Colibactin Genomic Island among Members of the Family Enterobacteriaceae

Putze, J., Hennequin, C., Nougayrède, J., Zhang, W., Homburg, S., Karch, H., Bringer, M.-A., Fayolle, C., Carniel, É., Rabsch, W., et al. (2009) · Infection and Immunity · doi:10.1128/iai.00522-09 · Cited by 319 · see citing works

Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions

Nanda, A. M., Thormann, K. M., & Frunzke, J. (2014) · Journal of Bacteriology · doi:10.1128/jb.02230-14 · Cited by 319 · see citing works

What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira

Fouts, D. E., Matthias, M. A., Adhikarla, H., Adler, B., Santos, L. A., Berg, D. E., Bulach, D., Buschiazzo, A., Chang, Y.-F., Galloway, R. L., et al. (2016) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0004403 · Cited by 311 · see citing works

Genomic island variability facilitates Prochlorococcus–virus coexistence

Avrani, S., Wurtzel, O., Sharon, I., Sorek, R., & Lindell, D. (2011) · Nature · doi:10.1038/nature10172 · Cited by 304 · see citing works

Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence

Juhas, M., Crook, D. W., & Hood, D. W. (2008) · Cellular Microbiology · doi:10.1111/j.1462-5822.2008.01187.x · Cited by 291 · see citing works

Streptococcus pneumoniae’s Virulence and Host Immunity: Aging, Diagnostics, and Prevention

Brooks, L. R. K., & Mias, G. I. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.01366 · Cited by 286 · see citing works

PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data

Ruby, J. G., Bellare, P., & DeRisi, J. L. (2013) · G3 Genes Genomes Genetics · doi:10.1534/g3.113.005967 · Cited by 285 · see citing works

Evaluation of genomic island predictors using a comparative genomics approach

Langille, M. G. I., Hsiao, W., & Brinkman, F. S. L. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-329 · Cited by 282 · see citing works

Detecting genomic islands using bioinformatics approaches

Langille, M. G. I., Hsiao, W., & Brinkman, F. S. L. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2350 · Cited by 280 · see citing works

Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora

Ziemert, N., Lechner, A., Wietz, M., Millán‐Aguiñaga, N., Chavarría, K. L., & Jensen, P. R. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1324161111 · Cited by 279 · see citing works

A Glimpse of Streptococcal Toxic Shock Syndrome from Comparative Genomics of S. suis 2 Chinese Isolates

Chen, C., Tang, J., Dong, W., Wang, C., Feng, Y., Wang, J., Zheng, F., Pan, X., Liu, D., Li, M., et al. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000315 · Cited by 271 · see citing works

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

Dhillon, B. K., Laird, M. R., Shay, J. A., Winsor, G. L., Lo, R., Nizam, F., Pereira, S. K., Waglechner, N., McArthur, A. G., Langille, M. G. I., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv401 · Cited by 267 · see citing works

Mapping the Pathways to StaphylococcalPathogenesis by Comparative Secretomics

Sibbald, M. J. J. B., Ziebandt, A., Engelmann, S., Hecker, M., de Jong, A., Harmsen, H. J. M., Raangs, G. C., Stokroos, I., Arends, J. P., Dubois, J. Y. F., et al. (2006) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00008-06 · Cited by 267 · see citing works

Extraintestinal Virulence Is a Coincidental By-Product of Commensalism in B2 Phylogenetic Group Escherichia coli Strains

Gall, T. L., Clermont, O., Gouriou, S., Picard, B., Nassif, X., Denamur, É., & Tenaillon, O. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm172 · Cited by 256 · see citing works

A Hypervariable 130-Kilobase Genomic Region of Magnetospirillum gryphiswaldense Comprises a Magnetosome Island Which Undergoes Frequent Rearrangements during Stationary Growth

Ullrich, S., Kube, M., Schübbe, S., Reinhardt, R., & Schüler, D. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.21.7176-7184.2005 · Cited by 255 · see citing works

The role of the prostate in male fertility, health and disease

Verze, P., Cai, T., & Lorenzetti, S. (2016) · Nature Reviews Urology · doi:10.1038/nrurol.2016.89 · Cited by 255 · see citing works

Legume Evolution: Where Do Nodules and Mycorrhizas Fit In?

Sprent, J. I., & James, E. K. (2007) · PLANT PHYSIOLOGY · doi:10.1104/pp.107.096156 · Cited by 253 · see citing works

Bacteria are small but not stupid: cognition, natural genetic engineering and socio-bacteriology

Shapiro, J. A. (2007) · Studies in History and Philosophy of Science Part C Studies in History and Philosophy of Biological and Biomedical Sciences · doi:10.1016/j.shpsc.2007.09.010 · Cited by 252 · see citing works

ExploringLactobacillus plantarumGenome Diversity by Using Microarrays

Molenaar, D., Bringel, F., Schuren, F. H. J., de Vos, W. M., Siezen, R. J., & Kleerebezem, M. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.17.6119-6127.2005 · Cited by 252 · see citing works

Genetics and cell biology of magnetosome formation in magnetotactic bacteria

Schüler, D. (2008) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2008.00116.x · Cited by 247 · see citing works

Metal Nanoparticles in Microbiology

Rai, M., & Durán, N. (2011) · Springer eBooks · doi:10.1007/978-3-642-18312-6 · Cited by 245 · see citing works

Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors

Ceccarelli, D., Hasan, N. A., Huq, A., & Colwell, R. R. (2013) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2013.00097 · Cited by 243 · see citing works

Biogeography of the Sulfolobus islandicus pan-genome

Reno, M. L., Held, N. L., Fields, C. J., Burke, P. V., & Whitaker, R. J. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0808945106 · Cited by 242 · see citing works

Massive comparative genomic analysis reveals convergent evolution of specialized bacteria

Merhej, V., Royer‐Carenzi, M., Pontarotti, P., & Raoult, D. (2009) · Biology Direct · doi:10.1186/1745-6150-4-13 · Cited by 233 · see citing works

Genomics and the bacterial species problem.

Doolittle, W. F., & Papke, R. T. (2006) · Genome biology · doi:10.1186/gb-2006-7-9-116 · Cited by 231 · see citing works

Bacteria in Agrobiology: Plant Growth Responses

Maheshwari, D. K. (2011) · Springer eBooks · doi:10.1007/978-3-642-20332-9 · Cited by 229 · see citing works

Photocatalytic Reactive Ultrafiltration Membrane for Removal of Antibiotic Resistant Bacteria and Antibiotic Resistance Genes from Wastewater Effluent

Ren, S., Boo, C., Guo, N., Wang, S., Elimelech, M., & Wang, Y. (2018) · Environmental Science & Technology · doi:10.1021/acs.est.8b01888 · Cited by 227 · see citing works

Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteria

Seitz, P., & Blokesch, M. (2012) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2012.00353.x · Cited by 222 · see citing works

Improved genomic island predictions with IslandPath-DIMOB

Bertelli, C., & Brinkman, F. S. L. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty095 · Cited by 222 · see citing works

An H-NS-like Stealth Protein Aids Horizontal DNA Transmission in Bacteria

Doyle, M., Fookes, M. C., Ivens, A. C., Mangan, M. W., Wain, J. R., & Dorman, C. J. (2007) · Science · doi:10.1126/science.1137550 · Cited by 219 · see citing works

Multifactorial Diversity Sustains Microbial Community Stability

Erkus, O., de Jager, V. C. L., Spus, M., van Alen-Boerrigter, I. J., van Rijswijck, I. M. H., Hazelwood, L., Janssen, P. W. M., van Hijum, S. A. F. T., Kleerebezem, M., & Smid, E. J. (2013) · The ISME Journal · doi:10.1038/ismej.2013.108 · Cited by 217 · see citing works

Genomics, Genetics, and Cell Biology of Magnetosome Formation

Jogler, C., & Schüler, D. (2009) · Annual Review of Microbiology · doi:10.1146/annurev.micro.62.081307.162908 · Cited by 207 · see citing works

The hidden life of integrative and conjugative elements

Delavat, F., Miyazaki, R., Carraro, N., Pradervand, N., & van der Meer, J. R. (2017) · FEMS Microbiology Reviews · doi:10.1093/femsre/fux008 · Cited by 207 · see citing works

The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways

Medema, M. H., Trefzer, A. C., Kovalchuk, A., van den Berg, M. A., Müller, U., Heijne, W. H. M., Wu, L., Alam, M. T., Ronning, C. M., Nierman, W. C., et al. (2010) · Genome Biology and Evolution · doi:10.1093/gbe/evq013 · Cited by 205 · see citing works

Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

Penn, K., Jenkins, C., Nett, M., Udwary, D., Gontang, E. A., McGlinchey, R. P., Foster, B., Lapidus, A. L., Podell, S. B., Allen, E. E., et al. (2009) · The ISME Journal · doi:10.1038/ismej.2009.58 · Cited by 203 · see citing works

Physiological Functions of Bacterial “Multidrug” Efflux Pumps

Henderson, P. J. F., Maher, C., Elbourne, L. D. H., Eijkelkamp, B. A., Paulsen, I. T., & Hassan, K. A. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.0c01226 · Cited by 203 · see citing works

Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands

Hsiao, W., Ung, K. S. E., Aeschliman, D. S., Bryan, J., Finlay, B. B., & Brinkman, F. S. L. (2005) · PLoS Genetics · doi:10.1371/journal.pgen.0010062 · Cited by 201 · see citing works

Evidence of Horizontal Transfer of Symbiotic Genes from a Bradyrhizobium japonicum Inoculant Strain to Indigenous Diazotrophs Sinorhizobium ( Ensifer ) fredii and Bradyrhizobium elkanii in a Brazilian Savannah Soil

Barcellos, F. G., Menna, P., Batista, J. S. D. S., & Hungría, M. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01823-06 · Cited by 199 · see citing works

Revisiting the Central Dogma in the 21st Century

Shapiro, J. A. (2009) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2009.04990.x · Cited by 199 · see citing works

A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments

Muller, D. A. E., Médigue, C., Koechler, S., Barbe, V., Barakat, M., Talla, E., Bonnefoy, V., Krin, E., Arsène‐Ploetze, F., Carapito, C., et al. (2007) · PLoS Genetics · doi:10.1371/journal.pgen.0030053 · Cited by 197 · see citing works

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

Ozer, E. A., Allen, J. P., & Hauser, A. R. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-737 · Cited by 196 · see citing works

Inter-individual differences in the gene content of human gut bacterial species

Zhu, A., Sunagawa, S., Mende, D. R., & Bork, P. (2015) · Genome biology · doi:10.1186/s13059-015-0646-9 · Cited by 196 · see citing works

Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities

Wright, M. S., Baker‐Austin, C., Lindell, A. H., Stepanauskas, R., Stokes, H. W., & McArthur, J. V. (2008) · The ISME Journal · doi:10.1038/ismej.2008.8 · Cited by 192 · see citing works

Molecular Analysis as an Aid To Assess the Public Health Risk of Non-O157 Shiga Toxin-Producing Escherichia coli Strains

Coombes, B. K., Wickham, M. E., Mascarenhas, M., Gruenheid, S., Finlay, B. B., & Karmali, M. A. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02566-07 · Cited by 191 · see citing works

Type III effector proteins from the plant pathogen Xanthomonas and their role in the interaction with the host plant

Gürlebeck, D., Thieme, F., & Bonas, U. (2005) · Journal of Plant Physiology · doi:10.1016/j.jplph.2005.11.011 · Cited by 190 · see citing works

Pathogenicity islands: the tip of the iceberg

Hentschel, U., & Hacker, J. H. (2001) · Microbes and Infection · doi:10.1016/s1286-4579(01)01410-1 · Cited by 139 · see citing works

Ecological fitness, genomic islands and bacterial pathogenicity

Hacker, J. H., & Carniel, É. (2001) · EMBO Reports · doi:10.1093/embo-reports/kve097 · Cited by 622 · see citing works

A Darwinian view of the evolution of microbes

Hacker, J. H., & Carniel, É. (2001) · Cited by 138 · see citing works

Pathogenicity Islands and the Evolution of Microbes

Hacker, J. H., & Kaper, J. B. (2000) · Annual Review of Microbiology · doi:10.1146/annurev.micro.54.1.641 · Cited by 1,298 · see citing works

Genomic Islands in Nutritional Fitness and Adaptation

Tirunagari, P., Choudhary, M., & Deb, S. (2023) · Springer eBooks · doi:10.1007/978-981-19-9342-8_7