Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

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CD4+ T cells in cancer

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A human cell atlas of fetal chromatin accessibility

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A cis-regulatory atlas in maize at single-cell resolution

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Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence

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Insights Gained from Single-Cell Analysis of Immune Cells in the Tumor Microenvironment

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Spatiotemporal Co-Dependency between Macrophages and Exhausted CD8 + T Cells in Cancer

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Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases

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cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

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Epigenetic regulation of T cell exhaustion

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A gene–environment-induced epigenetic program initiates tumorigenesis

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Single-cell RNA sequencing in cardiovascular development, disease and medicine

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Advancing Cancer Research and Medicine with Single-Cell Genomics

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Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

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Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy

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A human circulating immune cell landscape in aging and COVID-19

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The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination

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Single‐Cell Analysis Using Droplet Microfluidics

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Fibroblast pathology in inflammatory diseases

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Cancer epigenetics in clinical practice

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CD4 T-Cell Exhaustion: Does It Exist and What Are Its Roles in Cancer?

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Unraveling B cell trajectories at single cell resolution

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FOXO1 is a master regulator of memory programming in CAR T cells

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Divergent clonal differentiation trajectories of T cell exhaustion

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Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

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Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis

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Chromatin accessibility profiling methods

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Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

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scPerturb: harmonized single-cell perturbation data

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An atlas of gene regulatory elements in adult mouse cerebrum

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Intratumoral stem-like CCR4+ regulatory T cells orchestrate the immunosuppressive microenvironment in HCC associated with hepatitis B

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Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity

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Fibroblast inflammatory priming determines regenerative versus fibrotic skin repair in reindeer

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Cell-type-directed design of synthetic enhancers

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Histone lactylation couples cellular metabolism with developmental gene regulatory networks

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Clonal hematopoiesis is associated with protection from Alzheimer’s disease

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A latent lineage potential in resident neural stem cells enables spinal cord repair

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Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer

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BABEL enables cross-modality translation between multiomic profiles at single-cell resolution

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Single-cell chromatin accessibility landscape identifies tissue repair program in human regulatory T cells

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Single-nucleus chromatin accessibility profiling highlights regulatory mechanisms of coronary artery disease risk

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High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer

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scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics

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Multimodal single-cell chromatin analysis with SignacPreprint

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