Deep learning-assisted analysis of single-particle tracking for automated correlation between diffusion and function

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Objective comparison of particle tracking methods

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Systems survey of endocytosis by multiparametric image analysis

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Extracting intracellular diffusive states and transition rates from single-molecule tracking data

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soft-matter/trackpy: 0.6.2rc1

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Single-molecule imaging reveals receptor–G protein interactions at cell surface hot spots

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Robust model-based analysis of single-particle tracking experiments with Spot-On

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Single-particle Tracking as a Quantitative Microscopy-based Approach to Unravel Cell Entry Mechanisms of Viruses and Pharmaceutical Nanoparticles

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SpCas9 activity prediction by DeepSpCas9, a deep learning–based model with high generalization performance

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Single-Particle Diffusion Characterization by Deep Learning

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Inhibition of PIKfyve kinase prevents infection by Zaire ebolavirus and SARS-CoV-2

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A large size-selective DNA nanopore with sensing applications

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Inferring transient particle transport dynamics in live cells

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Dynamin recruitment and membrane scission at the neck of a clathrin-coated pit

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Dynamics of phosphoinositide conversion in clathrin-mediated endocytic traffic

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Membrane dynamics of dividing cells imaged by lattice light-sheet microscopy

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Classification and Segmentation of Nanoparticle Diffusion Trajectories in Cellular Micro Environments

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Objective comparison of methods to decode anomalous diffusion

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Single-particle combinatorial multiplexed liposome fusion mediated by DNA

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Particle Mobility Analysis Using Deep Learning and the Moment Scaling Spectrum

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Structural Correlates of Rotavirus Cell Entry

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Direct observation of Thermomyces lanuginosus lipase diffusional states by Single Particle Tracking and their remodeling by mutations and inhibition

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Capturing the start point of the virus–cell interaction with high-speed 3D single-virus tracking

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Detection of Diffusion Heterogeneity in Single Particle Tracking Trajectories Using a Hidden Markov Model with Measurement Noise Propagation

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The ABC of Insulin: The Organic Chemistry of a Small Protein

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Visualization of Calcium Ion Loss from Rotavirus during Cell Entry

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ExTrack characterizes transition kinetics and diffusion in noisy single-particle tracks

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Cross-Linking of Rotavirus Outer Capsid Protein VP7 by Antibodies or Disulfides Inhibits Viral Entry

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NOBIAS: Analyzing Anomalous Diffusion in Single-Molecule Tracks With Nonparametric Bayesian Inference

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Estimation of diffusive states from single-particle trajectory in heterogeneous medium using machine-learning methods

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Extracting Transition Rates in Particle Tracking Using Analytical Diffusion Distribution Analysis

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Semantic segmentation of anomalous diffusion using deep convolutional networks

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Tracking receptor motions at the plasma membrane reveals distinct effects of ligands on CCR5 dynamics depending on its dimerization status

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Single-Molecule Study of Thermomyces lanuginosus Lipase in a Detergency Application System Reveals Diffusion Pattern Remodeling by Surfactants and Calcium

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Temporal analysis of relative distances (TARDIS) is a robust, parameter-free alternative to single-particle tracking

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Enhanced hexamerization of insulin via assembly pathway rerouting revealed by single particle studies

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A density-based enrichment measure for assessing colocalization in single-molecule localization microscopy data

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Organelle bridges and nanodomain partitioning govern targeting of membrane-embedded proteins to lipid dropletsPreprint

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Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67

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Mind your tag in single-molecule measurements

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Attention-based LSTM for Motion Switching Detection of Particles in Living Cells

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DiffMAP-GP: Continuous 2D diffusion maps from particle trajectories without data binning using Gaussian processes

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Pseudo‐Infection Model: A Bottom‐Up Synthetic Approach to Cellular Entry of Enveloped Viruses and Virus Mimics

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Diverse intracellular trafficking of insulin analogs by machine learning-based colocalization and diffusion analysis

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Machine Learning Classification of 3D Intracellular Trafficking Using Custom and Imaris-Derived Motion Features

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DeepTRACE brings flexible machine learning to single-molecule track analysis

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Deep Learning Assisted Motion Behavior Analysis of Catalytic Micromotors Based on Trajectory and Optical Flow

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Deep Learning-Based Micro-Volume Viscosity Prediction Using the Blinking Dynamics of Janus Particles

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ThirdPeak is a flexible tool designed for the robust analysis of two- and three-dimensional tracking data

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Subcellular dynamics in unicellular parasites

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A guide for Single Particle Tracking: from sample preparation and image acquisition to the analysis of individual trajectoriesPreprint

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Single-Particle Tracking and Positional Phenotyping Reveals Variant-Specific Early Checkpoints in SARS-CoV-2 Cell EntryPreprint

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Tuning siRNA packing order in lipid nanoparticles modulates oligonucleotide functional deliveryPreprint

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Deep learning for microscopy without machine learning expertisePreprint

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P-variation statistics of random diffusivity processes

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Fuel-Free Rolosense: Viral Sensing Using Diffusional Particle Tracking

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Analyzing single-molecule dynamics with both complex types of motion and complex transition kinetics: Benchmarking of ExaTrackPreprint

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Single-molecule microscopy for precision medicine and diagnostics

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From microfluidics to nanodelivery: artificial intelligence reshapes neuropharmacology research strategies

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MORPHIS (MORPHological Interpretable Signature) captures heterogeneous treatment- and aging-related responses of single cellsPreprint

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Neural network-based three-dimensional multimolecular trajectory reconstruction model for single-molecule tracking

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Optical characterization of proteins at single-molecule level

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3D Single-Virus Tracking: Advances in Methodology and Labeling Strategies Towards Probing the Virus–Epithelium Interaction

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Atomic transport in metallic systems: mechanisms, characterization and multiscale modelling

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A light-weight, data-driven segmentation method for multi-state Brownian trajectories

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Dynamics Segmentation of Single Particle Trajectories Based on Recurrent Learning

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Recipient cell identity governs intracellular transport and membrane interactions of extracellular vesicles across speciesPreprint

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BioBrain: A Multi-Agent Framework for Natural Language Driven Quantitative Microscopy Data AnalysisPreprint

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Intraluminal Gold Nanoparticle-Loaded Liposomes Enable High-Resolution Nanoscale Mapping of Intracellular Delivery Pathways

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Single-Particle Tracking and Positional Phenotyping Reveal Variant-Specific Early Checkpoints in SARS-CoV-2 Cell Entry

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Recovering membrane interaction kinetics of single molecules from 3D tracking data

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Deep Learning Tools for Single Quantum Dot Tracking

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Artificial intelligence in nanotechnology: current applications and future perspectives

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Tuning siRNA packing order in lipid nanoparticles modulates oligonucleotide functional deliveryPreprint

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Deep Learning-Assisted Light-Sheet Superresolution Sensing of Six-Dimensional Nanoparticle Dynamics in Living Cells

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Recent advances in deep learning for biological microscopy image analysis beyond segmentation

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A single-particle tracking framework for quantifying intracellular partition free energies

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Biomimetic graphitic carbon nitride nanoparticles for multiscale photomodulation and therapeutic intervention

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AI-enhanced imaging, monitoring, and diagnostics in precision nanomedicine

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Lipid diffusion enhanced by molecular motorsPreprint

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Deep-SPT, a deep learning toolbox for single particle tracking in 3D, reveals how biological motion encodes function

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BPS2025 - Deep-learning-assisted single-particle tracking for automated correlation between diffusion and function

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BPS2026 – A generalizable deep learning toolbox for single-particle detection and tracking in volumetric data

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Automating superresolution microscopy image analysis with a novel deep learning architecture to probe intracellular trafficking

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Single-molecule localization and diffusivity microscopy reveals dynamic biomolecular organization in living cells

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