The DOI matches its Crossref record; 71 of the 71 references it cites were found in a registry or an index.
Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons
Open accessAbstract
Autism spectrum disorder (ASD) is thought to emerge during early cortical development. However, the exact developmental stages and associated molecular networks that prime disease propensity are elusive. To profile early neurodevelopmental alterations in ASD with macrocephaly, we monitored subject-derived induced pluripotent stem cells (iPSCs) throughout the recapitulation of cortical development. Our analysis revealed ASD-associated changes in the maturational sequence of early neuron development, involving temporal dysregulation of specific gene networks and morphological growth acceleration. The observed changes tracked back to a pathologically primed stage in neural stem cells (NSCs), reflected by altered chromatin accessibility. Concerted over-representation of network factors in control NSCs was sufficient to trigger ASD-like features, and circumventing the NSC stage by direct conversion of ASD iPSCs into induced neurons abolished ASD-associated phenotypes. Our findings identify heterochronic dynamics of a gene network that, while established earlier in development, contributes to subsequent neurodevelopmental aberrations in ASD.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Consistently, compared with gene expression signatures from bulk adult brain regions from the Allen BrainSpan dataset, both iNs and iPSC-iNs were most similar to prefrontal and frontal adult human cortex samples and less to other regions (Figure 7E; Mertens et al., 2015a; Schafer et al., 2019).”
From Age-dependent instability of mature neuronal fate in induced neurons from Alzheimer’s patients (2021) · cites this paper as Schafer et al., 2019
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Love, M. I., Huber, W., & Anders, S. (2014) · Genome Biology · doi:10.1186/s13059-014-0550-8 · Cited by 95,106
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003) · Genome Research · doi:10.1101/gr.1239303 · Cited by 51,888
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nature Protocols · doi:10.1038/nprot.2008.211 · Cited by 35,890
WGCNA: an R package for weighted correlation network analysis
Langfelder, P., & Horvath, S. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-559 · Cited by 27,252
Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors
Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K., & Yamanaka, S. (2007) · Cell · doi:10.1016/j.cell.2007.11.019 · Cited by 20,221
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y. C., Laslo, P., Cheng, J. X., Murre, C., Singh, H., & Glass, C. K. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.05.004 · Cited by 13,382
Cited by
Sorted by citations
Brain cell type–specific enhancer–promoter interactome maps and disease - risk association
Nott, A., Holtman, I. R., Coufal, N. G., Schlachetzki, J. C. M., Yu, M., Hu, R., Han, C. Z., Pena, M., Xiao, J., Wu, Y., et al. (2019) · Science · doi:10.1126/science.aay0793 · Cited by 699
Self-citationNeurodevelopmental Disorders: From Genetics to Functional Pathways
Parenti, I., Rabaneda, L. G., Schoen, H., & Novarino, G. (2020) · Trends in Neurosciences · doi:10.1016/j.tins.2020.05.004 · Cited by 687
Induced pluripotent stem cells (iPSCs): molecular mechanisms of induction and applications
Cerneckis, J., Cai, H., & Shi, Y. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01809-0 · Cited by 452
The molecular biology of FMRP: new insights into fragile X syndrome
Richter, J. D., & Zhao, X. (2021) · Nature Reviews Neuroscience · doi:10.1038/s41583-021-00432-0 · Cited by 390
Volpato, V., & Webber, C. (2020) · Disease Models & Mechanisms · doi:10.1242/dmm.042317 · Cited by 379
Human cerebral organoids — a new tool for clinical neurology research
Eichmüller, O. L., & Knoblich, J. A. (2022) · Nature Reviews Neurology · doi:10.1038/s41582-022-00723-9 · Cited by 319
An in vivo neuroimmune organoid model to study human microglia phenotypes
Schafer, S. T., Mansour, A. A., Schlachetzki, J. C. M., Pena, M., Ghassemzadeh, S. S., Mitchell, L. E., Mar, A., Quang, D., Stumpf, S., Ortiz, I. S., et al. (2023) · Cell · doi:10.1016/j.cell.2023.04.022 · Cited by 277
Cheroni, C., Caporale, N., & Testa, G. (2020) · Molecular Autism · doi:10.1186/s13229-020-00370-1 · Cited by 290
Age-dependent instability of mature neuronal fate in induced neurons from Alzheimer’s patients
Mertens, J., Herdy, J. R., Traxler, L., Schafer, S. T., Schlachetzki, J. C. M., Böhnke, L., Reid, D. A., Lee, H., Zangwill, D., Fernandes, D. P., et al. (2021) · Cell Stem Cell · doi:10.1016/j.stem.2021.04.004 · Cited by 240
Genomics, convergent neuroscience and progress in understanding autism spectrum disorder
Willsey, H. R., Willsey, A. J., Wang, B., & State, M. W. (2022) · Nature reviews. Neuroscience · doi:10.1038/s41583-022-00576-7 · Cited by 239
Uncovering the mode of action of engineered T cells in patient cancer organoids
Dekkers, J. F., Alieva, M., Cleven, A., Keramati, F., Wezenaar, A. K. L., van Vliet, E. J., Puschhof, J., Brázda, P., Johanna, I., Meringa, A. D., et al. (2022) · Nature Biotechnology · doi:10.1038/s41587-022-01397-w · Cited by 241
A transcription factor atlas of directed differentiation
Joung, J., Ma, S., Tay, T., Geiger-Schuller, K., Kirchgatterer, P. C., Verdine, V. K., Guo, B., Arias-García, M. A., Allen, W. E., Singh, A., et al. (2023) · Cell · doi:10.1016/j.cell.2022.11.026 · Cited by 229
Herdy, J. R., Traxler, L., Agarwal, R. K., Karbacher, L., Schlachetzki, J. C. M., Boehnke, L., Zangwill, D., Galasko, D., Glass, C. K., Mertens, J., et al. (2022) · Cell Stem Cell · doi:10.1016/j.stem.2022.11.010 · Cited by 208
Self-citationZika Virus Targets Glioblastoma Stem Cells through a SOX2-Integrin αvβ5 Axis
Zhu, Z., Mesci, P., Bernatchez, J. A., Gimple, R. C., Wang, X., Schafer, S. T., Wettersten, H. I., Beck, S., Clark, A. E., Wu, Q., et al. (2020) · Cell stem cell · doi:10.1016/j.stem.2019.11.016 · Cited by 191
Traxler, L., Herdy, J. R., Stefanoni, D., Eichhorner, S., Pelucchi, S., Szücs, A., Santagostino, A., Kim, Y., Agarwal, R. K., Schlachetzki, J. C. M., et al. (2022) · Cell Metabolism · doi:10.1016/j.cmet.2022.07.014 · Cited by 179
Self-citationDevelopmental mechanisms underlying the evolution of human cortical circuits
Vanderhaeghen, P., & Polleux, F. (2023) · Nature Reviews Neuroscience · doi:10.1038/s41583-023-00675-z · Cited by 173
Brain organoids: an ensemble of bioassays to investigate human neurodevelopment and disease
Sidhaye, J., & Knoblich, J. A. (2020) · Cell Death and Differentiation · doi:10.1038/s41418-020-0566-4 · Cited by 170
Zhang, W., Ma, L., Yang, M., Shao, Q., Xu, J., Lu, Z., Zhao, Z., Chen, R., Chai, Y., & Chen, J. (2020) · Genes & Development · doi:10.1101/gad.332494.119 · Cited by 143
Incorporation of a nucleoside analog maps genome repair sites in postmitotic human neurons
Reid, D. A., Reed, P. J., Schlachetzki, J. C. M., Nitulescu, I. I., Chou, G., Tsui, E. C., Jones, J. R., Chandran, S., Lu, A. T., McClain, C. A., et al. (2021) · Science · doi:10.1126/science.abb9032 · Cited by 121
Sessa, A., Fagnocchi, L., Mastrototaro, G., Massimino, L., Zaghi, M., Indrigo, M. T., Cattaneo, S., Martini, D., Gabellini, C., Pucci, C., et al. (2019) · Neuron · doi:10.1016/j.neuron.2019.07.013 · Cited by 118
Wells, M. F., Nemesh, J., Ghosh, S., Mitchell, J. M., Salick, M. R., Mello, C. J., Meyer, D., Pietilainen, O., Piccioni, F., Guss, E. J., et al. (2023) · Cell Stem Cell · doi:10.1016/j.stem.2023.01.010 · Cited by 116
Gazestani, V., Pramparo, T., Nalabolu, S. R., Kellman, B. P., Murray, S. S., Lopez, L., Pierce, K., Courchesne, E., & Lewis, N. E. (2019) · Nature Neuroscience · doi:10.1038/s41593-019-0489-x · Cited by 111
SynGAP isoforms differentially regulate synaptic plasticity and dendritic development
Araki, Y., Hong, I., Gamache, T. R., Ju, S., Collado‐Torres, L., Shin, J. H., & Huganir, R. L. (2020) · eLife · doi:10.7554/elife.56273 · Cited by 97
Warre-Cornish, K. M., Perfect, L., Nagy, R., Duarte, R. R. R., Reid, M. J., Raval, P., Mueller, A., Evans, A., Couch, A. C. M., Ghevaert, C., et al. (2020) · Science Advances · doi:10.1126/sciadv.aay9506 · Cited by 90
Lalli, M. A., Avey, D. R., Dougherty, J. D., Milbrandt, J., & Mitra, R. D. (2020) · Genome Research · doi:10.1101/gr.262295.120 · Cited by 89
Past, Present, and Future of Brain Organoid Technology.
Koo, B., Choi, B., Park, H., & Yoon, K. (2019) · Europe PMC (PubMed Central) · doi:10.14348/molcells.2019.0162 · Cited by 93
Fyn Tyrosine Kinase as Harmonizing Factor in Neuronal Functions and Dysfunctions
Matrone, C., Petrillo, F., Nasso, R., & Ferretti, G. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21124444 · Cited by 87
Tidball, A. M., Lopez‐Santiago, L. F., Yuan, Y., Glenn, T. W., Margolis, J. L., Walker, J. C., Kilbane, E. G., Miller, C. A., Bebin, E. M., Perry, M. S., et al. (2020) · Brain · doi:10.1093/brain/awaa247 · Cited by 85
Birtele, M., Dosso, A. D., Xu, T., Nguyen, T. N., Wilkinson, B., Hosseini, N., Nguyen, S. C., Urenda, J., Knight, G. T., Rojas, C., et al. (2023) · Nature Neuroscience · doi:10.1038/s41593-023-01477-3 · Cited by 101
The Neurodevelopment of Autism from Infancy Through Toddlerhood
Girault, J. B., & Piven, J. (2019) · Neuroimaging Clinics of North America · doi:10.1016/j.nic.2019.09.009 · Cited by 95
Metabolic regulation of neurodifferentiation in the adult brain
Maffezzini, C., Calvo‐Garrido, J., Wredenberg, A., & Freyer, C. (2020) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-019-03430-9 · Cited by 86
Griesi‐Oliveira, K., Fogo, M. S., Pinto, B. G. G., Alves, A. Y., Suzuki, Â. M., Morales, A. G., Ezquina, S., Sosa, J., Sutton, G. J., Sunaga, D. Y., et al. (2020) · Molecular Psychiatry · doi:10.1038/s41380-020-0669-9 · Cited by 80
Culotta, L., & Penzes, P. (2020) · Molecular Autism · doi:10.1186/s13229-020-00339-0 · Cited by 83
Modeling neuropsychiatric disorders using human induced pluripotent stem cells
Wang, M., Zhang, L., & Gage, F. H. (2019) · Protein & Cell · doi:10.1007/s13238-019-0638-8 · Cited by 76
Krishna, S., Arrojo e Drigo, R., Capitanio, J. S., Ramachandra, R., Ellisman, M., & Hetzer, M. W. (2021) · Developmental Cell · doi:10.1016/j.devcel.2021.10.008 · Cited by 73
Llamosas, N., Arora, V., Vij, R., Kılınç, M., Bijoch, Ł., Rojas, C., Reich, A. M., Sridharan, B., Willems, E., Piper, D. R., et al. (2020) · Journal of Neuroscience · doi:10.1523/jneurosci.1367-20.2020 · Cited by 86
Utility of iPSC-Derived Cells for Disease Modeling, Drug Development, and Cell Therapy
Nicholson, M. W., Ting, C.-Y., Chan, D. Z. H., Cheng, Y.-C., Lee, Y.-C., Hsu, C.-C., Huang, C.-Y., & Hsieh, P. C. H. (2022) · Cells · doi:10.3390/cells11111853 · Cited by 65
“They have also contributed greatly to the understanding of many psychiatric disorders such schizophrenia and autism spectrum disorder [63,64].”
BackgroundAtypical Neurogenesis in Induced Pluripotent Stem Cells From Autistic Individuals
Adhya, D., Swarup, V., Nagy, R., Polit, L. D., Shum, C., Valencia-Alarcón, E. P., Jozwik, K. M., Méndez, M. A., Horder, J., Loth, E., et al. (2020) · Biological Psychiatry · doi:10.1016/j.biopsych.2020.06.014 · Cited by 65
Thongkorn, S., Kanlayaprasit, S., Panjabud, P., Saeliw, T., Jantheang, T., Kasitipradit, K., Sarobol, S., Jindatip, D., Hu, V. W., Tencomnao, T., et al. (2021) · Scientific Reports · doi:10.1038/s41598-020-80390-2 · Cited by 66
Therapeutically viable generation of neurons with antisense oligonucleotide suppression of PTB
Maimon, R., Chillon-Marinas, C., Snethlage, C. E., Singhal, S. M., McAlonis-Downes, M., Ling, K., Rigo, F., Bennett, C. F., Da Cruz, S., Hnasko, T. S., et al. (2021) · Nature Neuroscience · doi:10.1038/s41593-021-00864-y · Cited by 62
Genetic pathways involved in human speech disorders
den Hoed, J., & Fisher, S. E. (2020) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2020.05.012 · Cited by 62
Systemic maternal inflammation promotes ASD via IL-6 and IFN-γ
Majerczyk, D., Ayad, E., Brewton, K. L., Saing, P., & Hart, P. C. (2022) · Bioscience Reports · doi:10.1042/bsr20220713 · Cited by 63
Multivariate Neural Connectivity Patterns in Early Infancy Predict Later Autism Symptoms
Dickinson, A. H., Daniel, M., Marin, A., Gaonkar, B., Dapretto, M., McDonald, N. M., & Jeste, S. (2020) · Biological Psychiatry Cognitive Neuroscience and Neuroimaging · doi:10.1016/j.bpsc.2020.06.003 · Cited by 66
Stern, S., Lau, S., Manole, A., Rosh, I., Percia, M. M., Ezer, R. B., Shokhirev, M. N., Qiu, F., Schafer, S. T., Mansour, A. A., et al. (2022) · npj Parkinson s Disease · doi:10.1038/s41531-022-00366-z · Cited by 60
Costa, C. I. S., Branco, E. V., Monfardini, F., Ferraz, H. C., Fock, R. A., Barbosa, R. H. A., Pessoa, A. L. S., Pérez, A. B. A., Lourenço, N. C. V., Vibranovski, M. D., et al. (2019) · Journal of Neurodevelopmental Disorders · doi:10.1186/s11689-019-9273-1 · Cited by 59
Metabolism navigates neural cell fate in development, aging and neurodegeneration
Traxler, L., Lagerwall, J., Eichhorner, S., Stefanoni, D., D’Alessandro, A., & Mertens, J. (2021) · Disease Models & Mechanisms · doi:10.1242/dmm.048993 · Cited by 59
Human 3D brain organoids: steering the demolecularization of brain and neurological diseases
Adlakha, Y. K. (2023) · Cell Death Discovery · doi:10.1038/s41420-023-01523-w · Cited by 63
Next‐generation disease modeling with direct conversion: a new path to old neurons
Traxler, L., Edenhofer, F., & Mertens, J. (2019) · FEBS Letters · doi:10.1002/1873-3468.13678 · Cited by 57
Brain Organoids as Model Systems for Genetic Neurodevelopmental Disorders
Baldassari, S., Musante, I., Iacomino, M., Zara, F., Salpietro, V., & Scudieri, P. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.590119 · Cited by 59
Cellular complexity in brain organoids: Current progress and unsolved issues
Mansour, A. A., Schafer, S. T., & Gage, F. H. (2020) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2020.05.013 · Cited by 52
Modeling Brain Disorders Using Induced Pluripotent Stem CellsPreprint
Vadodaria, K. C., Jones, J. R., Linker, S. B., & Gage, F. H. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a035659 · Cited by 52
Hussein, Y., Tripathi, U., Choudhary, A., Nayak, R., Peles, D., Rosh, I., Rabinski, T., Djamus, J., Vatine, G. D., Spiegel, R., et al. (2023) · Translational Psychiatry · doi:10.1038/s41398-023-02535-x · Cited by 54
Porciúncula, L. O., Goto‐Silva, L., Ledur, P. F., & Rehen, S. K. (2021) · Frontiers in Neuroscience · doi:10.3389/fnins.2021.674563 · Cited by 54
Sarieva, K., Kagermeier, T., Khakipoor, S., Atay, E., Yentür, Z., Becker, K., & Mayer, S. (2023) · Molecular Psychiatry · doi:10.1038/s41380-023-01997-1 · Cited by 52
Kissel, L. T., & Werling, D. M. (2022) · Biological Psychiatry · doi:10.1016/j.biopsych.2020.11.023 · Cited by 46
Intergenerational Metabolic Syndrome and Neuronal Network Hyperexcitability in Autism
Rivell, A., & Mattson, M. P. (2019) · Trends in Neurosciences · doi:10.1016/j.tins.2019.08.006 · Cited by 50
Roth, J. G., Muench, K. L., Asokan, A., Mallett, V. M., Gai, H., Verma, Y., Weber, S., Charlton, C. A., Fowler, J. L., Loh, K. M., et al. (2020) · eLife · doi:10.7554/elife.58178 · Cited by 47
Global Literature Analysis of Organoid and Organ‐on‐Chip Research
Shoji, J., Davis, R. P., Mummery, C. L., & Krauss, S. J. K. (2023) · Advanced Healthcare Materials · doi:10.1002/adhm.202301067 · Cited by 52
Anderson, N. C., Chen, P.-F., Meganathan, K., Saber, W. A., Petersen, A. J., Bhattacharyya, A., Kroll, K. L., & Şahin, M. (2021) · Stem Cell Reports · doi:10.1016/j.stemcr.2021.03.025 · Cited by 48
Advancing preclinical models of psychiatric disorders with human brain organoid cultures
Dixon, T. A., & Muotri, A. R. (2022) · Molecular Psychiatry · doi:10.1038/s41380-022-01708-2 · Cited by 49
Blood platelet research in autism spectrum disorders: In search of biomarkers
Padmakumar, M., Raes, E. V., Geet, C. V., & Freson, K. (2019) · Research and Practice in Thrombosis and Haemostasis · doi:10.1002/rth2.12239 · Cited by 49
Modeling human neurodevelopmental diseases with brain organoids
Lu, X., Yang, J., & Xiang, Y. (2022) · Cell Regeneration · doi:10.1186/s13619-021-00103-6 · Cited by 50
Liu, Y., Fu, Y., Yang, Y., Yi, G., Lian, J., Xie, B., Yao, Y., Chen, M., Niu, Y., Liu, L., et al. (2022) · Genetics Selection Evolution · doi:10.1186/s12711-022-00754-2 · Cited by 45
Early Actions of Neurotransmitters During Cortex Development and Maturation of Reprogrammed Neurons
Ojeda, J., & Ávila, A. (2019) · Frontiers in Synaptic Neuroscience · doi:10.3389/fnsyn.2019.00033 · Cited by 48
Brant, B., Stern, T., Shekhidem, H. A., Mizrahi, L., Rosh, I., Stern, Y., Ofer, P., Asleh, A., Umanah, G. K. E., Jada, R., et al. (2021) · Molecular Psychiatry · doi:10.1038/s41380-021-01281-0 · Cited by 46
Human in vitro models for understanding mechanisms of autism spectrum disorder
Gordon, A., & Geschwind, D. H. (2020) · Molecular Autism · doi:10.1186/s13229-020-00332-7 · Cited by 45
Breen, M. S., Browne, A., Hoffman, G. E., Stathopoulos, S., Brennand, K., Buxbaum, J. D., & Drapeau, E. (2020) · Molecular Autism · doi:10.1186/s13229-020-00355-0 · Cited by 44
Yang, G., & Shcheglovitov, A. (2019) · Developmental Dynamics · doi:10.1002/dvdy.100 · Cited by 46
Wolff, J. J., & Piven, J. (2020) · Journal of the American Academy of Child & Adolescent Psychiatry · doi:10.1016/j.jaac.2020.07.910 · Cited by 48
Maternal immune activation primes deficiencies in adult hippocampal neurogenesis
Couch, A. C. M., Berger, T., Hanger, B., Matulevičiūtė, R., Srivastava, D. P., Thuret, S., & Vernon, A. C. (2021) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2021.07.021 · Cited by 44
Temporal patterning in neural progenitors: from Drosophila development to childhood cancers
Maurange, C. (2020) · Disease Models & Mechanisms · doi:10.1242/dmm.044883 · Cited by 43
Kanlayaprasit, S., Thongkorn, S., Panjabud, P., Jindatip, D., Hu, V. W., Kikkawa, T., Osumi, N., & Sarachana, T. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222413201 · Cited by 42
Tobon, A., Shyti, R., Villa, C. E., Cheroni, C., Fuentes-Bravo, P., Trattaro, S., Caporale, N., Troglio, F., Tenderini, E., Mihailovich, M., et al. (2023) · Science Advances · doi:10.1126/sciadv.adh2726 · Cited by 40
Deconstructing and reconstructing the human brain with regionally specified brain organoids
Xiang, Y., Çakır, B., & Park, I. (2020) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2020.05.023 · Cited by 39
Human stem cell-based models for studying autism spectrum disorder-related neuronal dysfunction
Cheffer, A., Flitsch, L. J., Krutenko, T., Röderer, P., Sokhranyaeva, L., Iefremova, V., Hajo, M., Peitz, M., Schwarz, M. K., & Brüstle, O. (2020) · Molecular Autism · doi:10.1186/s13229-020-00383-w · Cited by 43
Targeting epigenetic dysregulation in autism spectrum disorders
Herrera, M. L., Paraíso‐Luna, J., Bustos-Martínez, I., & Barco, Á. (2024) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2024.06.004 · Cited by 46
Benchmarking brain organoid recapitulation of fetal corticogenesis
Cheroni, C., Trattaro, S., Caporale, N., Tobon, A., Tenderini, E., Sebastiani, S., Troglio, F., Gabriele, M., Bressan, R. B., Pollard, S. M., et al. (2022) · Translational Psychiatry · doi:10.1038/s41398-022-02279-0 · Cited by 43
Sequential perturbations to mouse corticogenesis following in utero maternal immune activation
Canales, C. P., Estes, M. L., Cichewicz, K., Angara, K., Aboubechara, J. P., Cameron, S., Prendergast, K., Su-Feher, L., Zdilar, I., Kreun, E. J., et al. (2021) · eLife · doi:10.7554/elife.60100 · Cited by 43
D’Antoni, C., Mautone, L., Sanchini, C., Tondo, L., Grassmann, G., Cidonio, G., Bezzi, P., Cordella, F., & Angelantonio, S. D. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241310762 · Cited by 41
Modeling genetic epilepsies in a dish
Niu, W., & Parent, J. M. (2019) · Developmental Dynamics · doi:10.1002/dvdy.79 · Cited by 38
Overexpression of CD47 is associated with brain overgrowth and 16p11.2 deletion syndrome
Li, J., Brickler, T., Banuelos, A. M., Marjon, K. D., Shcherbina, A., Banerjee, S., Bian, J. T., Narayanan, C., Weissman, I. L., & Chetty, S. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2005483118 · Cited by 38
Optogenetics in the Era of Cerebral Organoids
Shiri, Z., Simorgh, S., Naderi, S., & Baharvand, H. (2019) · Trends in biotechnology · doi:10.1016/j.tibtech.2019.05.009 · Cited by 37
Advances and Applications of Brain Organoids
Li, Y., Zeng, P.-M., Wu, J., & Luo, Z. (2023) · Neuroscience Bulletin · doi:10.1007/s12264-023-01065-2 · Cited by 40
Neural cell state shifts and fate loss in ageing and age-related diseases
Traxler, L., Lucciola, R., Herdy, J. R., Jones, J. R., Mertens, J., & Gage, F. H. (2023) · Nature Reviews Neurology · doi:10.1038/s41582-023-00815-0 · Cited by 37
The Link Between Autism and Sex-Related Neuroanatomy, and Associated Cognition and Gene Expression
Floris, D. L., Peng, H., Warrier, V., Lombardo, M. V., Pretzsch, C. M., Moreau, C. A., Tsompanidis, A., Gong, W., Mennes, M., Llera, A., et al. (2022) · American Journal of Psychiatry · doi:10.1176/appi.ajp.20220194 · Cited by 36
Villa, C., Combi, R., Conconi, D., & Lavitrano, M. (2021) · Pharmaceutics · doi:10.3390/pharmaceutics13020280 · Cited by 37
Micali, N., Kim, S.-K., Diaz-Bustamante, M., Stein-O’Brien, G., Seo, S., Shin, J.-H., Rash, B. G., Ma, S., Wang, Y., Olivares, N. A., et al. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.107599 · Cited by 31
Lewis, E. M. A., Meganathan, K., Baldridge, D., Gontarz, P. M., Zhang, B., Bonni, A., Constantino, J. N., & Kroll, K. L. (2019) · Molecular Autism · doi:10.1186/s13229-019-0306-0 · Cited by 32
Reaching into the toolbox: Stem cell models to study neuropsychiatric disorders
Whiteley, J. T., Fernandes, S., Sharma, A., Mendes, A. P. D., Racha, V., Benassi, S. K., & Marchetto, M. C. (2022) · Stem Cell Reports · doi:10.1016/j.stemcr.2021.12.015 · Cited by 32
‘Channeling’ therapeutic discovery for epileptic encephalopathy through iPSC technologies
Simkin, D., Ambrosi, C. M., Marshall, K. A., Williams, L. A., Eisenberg, J., Gharib, M., Dempsey, G. T., George, A. L., McManus, O. B., & Kiskinis, E. (2022) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2022.03.001 · Cited by 32
Phenotypic complexities of rare heterozygous neurexin-1 deletions
Fernando, M. B., Fan, Y., Zhang, Y., Tokolyi, A., Murphy, A., Kammourh, S., Deans, P. J. M., Ghorbani, S., Onatzevitch, R., Pero, A., et al. (2025) · Nature · doi:10.1038/s41586-025-08864-9 · Cited by 30
Moore, D. Y., Meays, B. M., Madduri, L. S. V., Shahjin, F., Chand, S., Niu, M., Albahrani, A., Guda, C., Pendyala, G., Fox, H. S., et al. (2019) · Stem Cells International · doi:10.1155/2019/8710180 · Cited by 31
Developmental convergence and divergence in human stem cell models of autism
Gordon, A., Yoon, S., Bicks, L. K., Martín, J. M., Pintacuda, G., Arteaga, S. A., Wamsley, B., Guo, Q., Elahi, L. S., Dolmetsch, R. E., et al. (2026) · Nature · doi:10.1038/s41586-025-10047-5 · Cited by 42
Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord Injury
Skinnider, M. A., Rogalski, J. C., Tigchelaar, S., Manouchehri, N., Prudova, A., Jackson, A., Nielsen, K., Jeong, J., Chaudhary, S., Shortt, K., et al. (2021) · Molecular & Cellular Proteomics · doi:10.1016/j.mcpro.2021.100096 · Cited by 30
Romanovsky, E., Choudhary, A., Peles, D., Abu-Akel, A. M., & Stern, S. (2024) · Molecular Psychiatry · doi:10.1038/s41380-024-02740-0 · Cited by 27
SYNGAP1 deficiency disrupts synaptic neoteny in xenotransplanted human cortical neurons in vivo
Vermaercke, B., Iwata, R., Wierda, K., Boubakar, L., Rodriguez, P., Ditkowska, M., Bonin, V., & Vanderhaeghen, P. (2024) · Neuron · doi:10.1016/j.neuron.2024.07.007 · Cited by 27
Tripathi, U., Rosh, I., Ezer, R. B., Nayak, R., Hussein, Y., Choudhary, A., Djamus, J., Manole, A., Houlden, H., Gage, F. H., et al. (2024) · npj Parkinson s Disease · doi:10.1038/s41531-024-00715-0 · Cited by 34
Modeling brain development and diseases with human cerebral organoids
Shi, Y., Wu, Q., & Wang, X. (2020) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2020.09.006 · Cited by 28
Pagan, C., Benabou, M., Leblond, C. S., Cliquet, F., Mathieu, A., Lemière, N., Goubran‐Botros, H., Delorme, R., Leboyer, M., Callebert, J., et al. (2021) · Translational Psychiatry · doi:10.1038/s41398-020-01125-5 · Cited by 28
Complement C4 Is Reduced in iPSC-Derived Astrocytes of Autism Spectrum Disorder Subjects
Mansur, F., Silva, A. L. T. E., Gomes, A. K. S., Magdalon, J., de Souza, J. S., Griesi‐Oliveira, K., Passos‐Bueno, M. R., & Sertie, A. L. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22147579 · Cited by 29
Metadata
- Authors
- Schafer, S. T., Paquola, A. C. M., Stern, S., Gosselin, D., Ku, M., Pena, M., Kuret, T. J. M., Liyanage, M., Mansour, A. A., Jaeger, B. N., Marchetto, M. C., Glass, C. K., Mertens, J., & Gage, F. H.
- Affiliations
- Salk Institute for Biological Studies (US)
- Centre hospitalier universitaire de Québec (CA)
- University of California San Diego (US)
- Corresponding author
- Gage, Fred H.
- ORCID
- Venue
- Nature Neuroscience
- Published
- 2019-01-07
- Volume
- 22
- Issue
- 2
- Pages
- 243-255
- ISSN
- 1097-6256 (ISSN-L)
- 1546-1726
- PMC
- PMC6402576
- OpenAlex
- W2906812748
- Cited by
- 288
- References
- 71
- Citations by year
- 2026: 18 · 2025: 34 · 2024: 25 · 2023: 35 · 2022: 40 · 2021: 44 · 2020: 63 · 2019: 28
- FWCI
- 25.58
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Neuroscience (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute on Aging (R01AG056306)
- National Institute of Mental Health (R01MH090258, R03MH115426, R01MH095741)
- National Cancer Institute (P30CA014195)
- National Institute of Neurological Disorders and Stroke (R01NS096170)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Autism Spectrum Disorder Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Keywords
- autism spectrum disorder, heterochrony, cortical development, neural stem cells, induced neurons, induced pluripotent stem cells, chromatin accessibility, macrocephaly, iPSC-derived neurons
- MeSH terms
- Autism Spectrum Disorder, Humans, Nerve Net, Neurons, Gene Regulatory Networks, Inhibitory Postsynaptic Potentials, Induced Pluripotent Stem Cells, Neural Stem Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review