The DOI matches its Crossref record; 55 of the 55 references it cites were found in a registry or an index.
Redundant Sources of Wnt Regulate Intestinal Stem Cells and Promote Formation of Paneth Cells
Open accessAbstract
Background & aims Wnt signaling regulates multiple aspects of intestinal physiology, including stem cell maintenance. Paneth cells support stem cells by secreting Wnt, but little is known about the exact sources and primary functions of individual Wnt family members.Methods We analyzed intestinal tissues and cultured epithelial cells from adult mice with conditional deletion of Wnt3 (Vil-CreERT2;Wnt3fl/fl mice). We also analyzed intestinal tissues and cells from Atoh1 mutant mice, which lack secretory cells.Results Unexpectedly, Wnt3 was dispensable for maintenance of intestinal stem cells in mice, indicating a redundancy of Wnt signals. By contrast, cultured crypt organoids required Paneth cell-derived Wnt3. Addition of exogenous Wnt, or coculture with mesenchymal cells, restored growth of Vil-CreERT2;Wnt3fl/fl crypt organoids. Intestinal organoids from Atoh1 mutant mice did not grow or form Paneth cells; addition of Wnt3 allowed growth in the absence of Paneth cells. Wnt signaling had a synergistic effect with the Lgr4/5 ligand R-spondin to induce formation of Paneth cells. Mosaic expression of Wnt3 in organoids using a retroviral vector promoted differentiation of Paneth cells in a cell-autonomous manner.Conclusions Wnt is part of a signaling loop that affects homeostasis of intestinal stem and Paneth cells in mice. Wnt3 signaling is required for growth and development of organoid cultures, whereas nonepithelial Wnt signals could provide a secondary physiological source of Wnt.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Quantitative real-time RT-PCR analyses for expression of Wnt1, 2, 2b, 3, 3a, 8a, 8b, 10a, and 10b (Farin et al., 2012) in ISCs demonstrated reduced Wnt3 (Figure 3C) levels in aged ISCs.”
From Canonical Wnt Signaling Ameliorates Aging of Intestinal Stem Cells (2017) · cites this paper as Farin et al., 2012
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
Sato, T., Vries, R. G., Snippert, H. J., van de Wetering, M., Barker, N., Stange, D. E., van Es, J. H., Abo, A., Kujala, P., Peters, P. J., et al. (2009) · Nature · doi:10.1038/nature07935 · Cited by 7,204
Self-citationIdentification of stem cells in small intestine and colon by marker gene Lgr5
Barker, N., van Es, J. H., Kuipers, J., Kujala, P., van den Born, M., Cozijnsen, M., Haegebarth, A., Korving, J., Begthel, H., Peters, P. J., et al. (2007) · Nature · doi:10.1038/nature06196 · Cited by 5,687
Self-citationGeneralized lacZ expression with the ROSA26 Cre reporter strain
Soriano, P. (1999) · Nature Genetics · doi:10.1038/5007 · Cited by 5,237
Sato, T., Stange, D. E., Ferrante, M., Vries, R. G. J., van Es, J. H., van den Brink, S., van Houdt, W. J., Pronk, A., van Gorp, J., Siersema, P. D., et al. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.07.050 · Cited by 3,753
Self-citationPaneth cells constitute the niche for Lgr5 stem cells in intestinal crypts
Sato, T., van Es, J. H., Snippert, H. J., Stange, D. E., Vries, R. G., van den Born, M., Barker, N., Shroyer, N. F., van de Wetering, M., & Clevers, H. (2011) · Nature · doi:10.1038/nature09637 · Cited by 2,510
Self-citationThe β-Catenin/TCF-4 Complex Imposes a Crypt Progenitor Phenotype on Colorectal Cancer Cells
van de Wetering, M., Sancho, E., Verweij, C., de Lau, W., Oving, I., Hurlstone, A., van der Horn, K., Batlle, E., Coudreuse, D., Haramis, A.-P., et al. (2002) · Cell · doi:10.1016/s0092-8674(02)01014-0 · Cited by 2,030
Self-citationStem Cells, Self-Renewal, and Differentiation in the Intestinal Epithelium
van der Flier, L. G., & Clevers, H. C. (2008) · Annual Review of Physiology · doi:10.1146/annurev.physiol.010908.163145 · Cited by 1,994
Self-citationDepletion of epithelial stem-cell compartments in the small intestine of mice lacking Tcf-4
Kořínek, V., Barker, N., Moerer, P., van Donselaar, E. V., Huls, G., Peters, P., & Clevers, H. (1998) · Nature Genetics · doi:10.1038/1270 · Cited by 1,704
Self-citationLgr5 homologues associate with Wnt receptors and mediate R-spondin signalling
de Lau, W., Barker, N., Low, T. Y., Koo, B., Li, V. S. W., Teunissen, H., Kujala, P., Haegebarth, A., Peters, P. J., van de Wetering, M., et al. (2011) · Nature · doi:10.1038/nature10337 · Cited by 1,302
Self-citationBmi1 is expressed in vivo in intestinal stem cells
Sangiorgi, E., & Capecchi, M. R. (2008) · Nature Genetics · doi:10.1038/ng.165 · Cited by 1,245
Cited by
Sorted by citations
Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials
Du, X., Zhou, J., Shi, J., & Xu, B. (2015) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00299 · Cited by 1,896
In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration
Huch, M., Dorrell, C., Boj, S. F., van Es, J. H., Li, V. S. W., van de Wetering, M., Sato, T., Hamer, K., Sasaki, N., Finegold, M. J., et al. (2013) · Nature · doi:10.1038/nature11826 · Cited by 1,555
Self-citationAn integral program for tissue renewal and regeneration: Wnt signaling and stem cell control
Clevers, H. C., Loh, K. M., & Nusse, R. (2014) · Science · doi:10.1126/science.1248012 · Cited by 1,386
Self-citationAdult intestinal stem cells: critical drivers of epithelial homeostasis and regeneration
Barker, N. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3721 · Cited by 1,424
Extracellular matrix: A dynamic microenvironment for stem cell niche
Gattazzo, F., Urciuolo, A., & Bonaldo, P. (2014) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2014.01.010 · Cited by 1,365
The intestinal crypt, a prototype stem cell compartment
Clevers, H. (2013) · Cell · doi:10.1016/j.cell.2013.07.004 · Cited by 1,223
Self-citationModeling colorectal cancer using CRISPR-Cas9–mediated engineering of human intestinal organoids
Matano, M., Date, S., Shimokawa, M., Takano, A., Fujii, M., Ohta, Y., Watanabe, T., Kanai, T., & Sato, T. (2015) · Nature Medicine · doi:10.1038/nm.3802 · Cited by 1,135
Growing Self-Organizing Mini-Guts from a Single Intestinal Stem Cell: Mechanism and Applications
Sato, T., & Clevers, H. (2013) · Science · doi:10.1126/science.1234852 · Cited by 1,170
Self-citationTales from the crypt: new insights into intestinal stem cells
Gehart, H., & Clevers, H. C. (2018) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-018-0081-y · Cited by 1,046
Self-citationPaneth Cells: Maestros of the Small Intestinal Crypts
Clevers, H. C., & Bevins, C. L. (2013) · Annual Review of Physiology · doi:10.1146/annurev-physiol-030212-183744 · Cited by 748
Self-citationCell fate specification and differentiation in the adult mammalian intestine
Beumer, J., & Clevers, H. C. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0278-0 · Cited by 703
Self-citationDenervation suppresses gastric tumorigenesis
Zhao, C., Hayakawa, Y., Kodama, Y., Muthupalani, S., Westphalen, C. B., Andersen, G. T., Flatberg, A., Johannessen, H., Friedman, R. A., Renz, B. W., et al. (2014) · Science Translational Medicine · doi:10.1126/scitranslmed.3009569 · Cited by 687
Yap-dependent reprogramming of Lgr5+ stem cells drives intestinal regeneration and cancer
Gregorieff, A., Liu, Y., Inanlou, M. R., Khomchuk, Y., & Wrana, J. L. (2015) · Nature · doi:10.1038/nature15382 · Cited by 673
Niche-independent high-purity cultures of Lgr5+ intestinal stem cells and their progeny
Yin, X., Farin, H. F., van Es, J. H., Clevers, H. C., Langer, R., & Karp, J. M. (2013) · Nature Methods · doi:10.1038/nmeth.2737 · Cited by 587
Self-citationVisualization of a short-range Wnt gradient in the intestinal stem-cell niche
Farin, H. F., Jordens, I., Mosa, M. H., Basak, O., Korving, J., Tauriello, D. V. F., de Punder, K., Angers, S., Peters, P. J., Maurice, M. M., et al. (2016) · Nature · doi:10.1038/nature16937 · Cited by 525
Self-citationIntestinal crypt homeostasis revealed at single-stem-cell level by in vivo live imaging
Ritsma, L., Ellenbroek, S. I. J., Zomer, A., Snippert, H. J. G., de Sauvage, F. J., Simons, B. D., Clevers, H. C., & van Rheenen, J. (2014) · Nature · doi:10.1038/nature12972 · Cited by 501
Self-citationRecapitulating macro-scale tissue self-organization through organoid bioprinting
Brassard, J. A., Nikolaev, M., Hübscher, T., Hofer, M., & Lutolf, M. P. (2021) · Nature Materials · doi:10.1038/s41563-020-00803-5 · Cited by 469
Organoids: Modeling Development and the Stem Cell Niche in a Dish
Kretzschmar, K., & Clevers, H. C. (2016) · Developmental Cell · doi:10.1016/j.devcel.2016.08.014 · Cited by 496
Self-citationThe Notch and Wnt pathways regulate stemness and differentiation in human fallopian tube organoids
Kessler, M., Hoffmann, K., Brinkmann, V., Thieck, O., Jackisch, S., Toelle, B., Berger, H., Mollenkopf, H., Mangler, M., Sehouli, J., et al. (2015) · Nature Communications · doi:10.1038/ncomms9989 · Cited by 468
Microbiota-Derived Lactate Accelerates Intestinal Stem-Cell-Mediated Epithelial Development
Lee, Y. S., Kim, T.-Y., Kim, Y., Lee, S.-H., Kim, S., Kang, S. W., Yang, J., Baek, I., Sung, Y. H., Park, Y., et al. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.11.002 · Cited by 474
Treatment of a metabolic liver disease by in vivo genome base editing in adult mice
Villiger, L., Grisch‐Chan, H. M., Lindsay, H. A., Ringnalda, F. C. A. S., Pogliano, C. B., Allegri, G., Fingerhut, R., Häberle, J., Matos, J., Robinson, M. D., et al. (2018) · Nature Medicine · doi:10.1038/s41591-018-0209-1 · Cited by 426
Fordham, R. P., Yui, S., Hannan, N. R. F., Soendergaard, C., Madgwick, A., Schweiger, P. J., Nielsen, O. H., Vallier, L., Pedersen, R. A., Nakamura, T., et al. (2013) · Cell stem cell · doi:10.1016/j.stem.2013.09.015 · Cited by 407
GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells
Değirmenci, B., Valenta, T., Dimitrieva, S., Hausmann, G., & Basler, K. (2018) · Nature · doi:10.1038/s41586-018-0190-3 · Cited by 396
Wu, H., Xie, S., Miao, J., Li, Y., Wang, Z., Wang, M., & Yu, Q. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1734423 · Cited by 382
Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient
McCarthy, N., Manieri, E., Storm, E. E., Saadatpour, A., Luoma, A., Kapoor, V. N., Madha, S., Gaynor, L. T., Cox, C. B., Keerthivasan, S., et al. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.01.008 · Cited by 369
Wnt signaling in adult intestinal stem cells and cancer
Krausová, M., & Kořínek, V. (2013) · Cellular Signalling · doi:10.1016/j.cellsig.2013.11.032 · Cited by 380
Başak, O., Beumer, J., Wiebrands, K., Seno, H., van Oudenaarden, A., & Clevers, H. C. (2016) · Cell stem cell · doi:10.1016/j.stem.2016.11.001 · Cited by 365
Self-citation3D model for CAR‐mediated cytotoxicity using patient‐derived colorectal cancer organoids
Schnalzger, T. E., de Groot, M. H., Zhang, C., Mosa, M. H., Michels, B. E., Röder, J., Darvishi, T., Wels, W. S., & Farin, H. F. (2019) · The EMBO Journal · doi:10.15252/embj.2018100928 · Cited by 354
Self-citationStroma provides an intestinal stem cell niche in the absence of epithelial Wnts
Kabiri, Z., Greicius, G., Madan, B., Biechele, S., Zhong, Z. A., Zaribafzadeh, H., Edison, Aliyev, J., Wu, Y., Bunte, R. M., et al. (2014) · Development · doi:10.1242/dev.104976 · Cited by 351
Hayakawa, Y., Ariyama, H., Stančíková, J., Sakitani, K., Asfaha, S., Renz, B. W., Dubeykovskaya, Z. A., Shibata, W., Wang, H., Westphalen, C. B., et al. (2015) · Cancer Cell · doi:10.1016/j.ccell.2015.10.003 · Cited by 330
Qi, Z., Li, Y., Zhao, B., Xu, C., Liu, Y., Li, H., Zhang, B., Wang, X., Yang, X., Xie, W., et al. (2017) · Nature Communications · doi:10.1038/ncomms13824 · Cited by 320
Establishment of Gastrointestinal Epithelial Organoids
Mahé, M. M., Aihara, E., Schumacher, M. A., Zavros, Y. L., Montrose, M. H., Helmrath, M. A., Sato, T., & Shroyer, N. F. (2013) · Current Protocols in Mouse Biology · doi:10.1002/9780470942390.mo130179 · Cited by 308
Stzepourginski, I., Nigro, G., Jacob, J.-M., Dulauroy, S., Sansonetti, P. J., Eberl, G., & Peduto, L. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1620059114 · Cited by 323
Reg4 + deep crypt secretory cells function as epithelial niche for Lgr5 + stem cells in colon
Sasaki, N., Sachs, N., Wiebrands, K., Ellenbroek, S. I. J., Fumagalli, A., Lyubimova, A., Begthel, H., van den Born, M., van Es, J. H., Karthaus, W. R., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1607327113 · Cited by 314
Self-citationMiddendorp, S., Schneeberger, K., Wiegerinck, C. L., Mokrý, M., Akkerman, R. D. L., Wijngaarden, S., Clevers, H. C., & Nieuwenhuis, E. E. S. (2014) · Stem Cells · doi:10.1002/stem.1655 · Cited by 302
Self-citationSampaziotis, F., Justin, A. W., Tysoe, O. C., Sawiak, S., Godfrey, E. M., Upponi, S. S., Gieseck, R. L., de Brito, M. C., Berntsen, N. L., Gómez-Vázquez, M. J., et al. (2017) · Nature Medicine · doi:10.1038/nm.4360 · Cited by 296
mTORC1-mediated translational elongation limits intestinal tumour initiation and growth
Faller, W. J., Jackson, T. J., Knight, J. R. P., Ridgway, R. A., Jamieson, T. J., Karim, S. A., Jones, C., Radulescu, S., Huels, D. J., Myant, K., et al. (2014) · Nature · doi:10.1038/nature13896 · Cited by 315
WNT Signaling and Colorectal Cancer
Schatoff, E. M., Leach, B. I., & Dow, L. E. (2017) · Current Colorectal Cancer Reports · doi:10.1007/s11888-017-0354-9 · Cited by 313
Kim, S., Shin, Y.-C., Kim, T., Kim, Y., Lee, Y., Lee, S.-H., Kim, M., Eunju, O., Kim, K. S., & Kweon, M. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1892441 · Cited by 303
Canonical Wnt Signaling Ameliorates Aging of Intestinal Stem Cells
Nalapareddy, K., Nattamai, K. J., Kumar, R. S., Karns, R., Wikenheiser-Brokamp, K. A., Sampson, L. L., Mahe, M. M., Sundaram, N., Yacyshyn, M.-B., Yacyshyn, B., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.02.056 · Cited by 280
Regulation and plasticity of intestinal stem cells during homeostasis and regeneration
Beumer, J., & Clevers, H. C. (2016) · Development · doi:10.1242/dev.133132 · Cited by 305
Self-citationGreicius, G., Kabiri, Z., Sigmundsson, K., Liang, C., Bunte, R., Singh, M. K., & Virshup, D. M. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1713510115 · Cited by 286
Saha, S., Aranda, E., Hayakawa, Y., Bhanja, P., Atay, S., Brodin, N. P., Li, J., Asfaha, S., Liu, L., Tailor, Y. H., et al. (2016) · Nature Communications · doi:10.1038/ncomms13096 · Cited by 284
The Intestinal Stem Cell Niche: Homeostasis and Adaptations
Santos, A. J. M., Lo, Y., Mah, A. T., & Kuo, C. J. (2018) · Trends in Cell Biology · doi:10.1016/j.tcb.2018.08.001 · Cited by 290
Porcine models of digestive disease: the future of large animal translational research
Gonzalez, L. M., Moeser, A. J., & Blikslager, A. T. (2015) · Translational research · doi:10.1016/j.trsl.2015.01.004 · Cited by 294
Frank, D. B., Peng, T., Zepp, J. A., Snitow, M. E., Vincent, T. L., Penkala, I. J., Cui, Z., Herriges, M. J., Morley, M. P., Zhou, S., et al. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.11.001 · Cited by 277
Foxl1-Expressing Mesenchymal Cells Constitute the Intestinal Stem Cell Niche
Aoki, R., Shoshkes-Carmel, M., Gao, N., Shin, S., May, C. L., Golson, M. L., Zahm, A. M., Ray, M., Wiser, C. L., Wright, C. V. E., et al. (2015) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2015.12.004 · Cited by 286
Ascl2 acts as an R-spondin/Wnt-responsive switch to control stemness in intestinal crypts
Schuijers, J., Junker, J. P., Mokry, M., Hatzis, P., Koo, B.-K., Sasselli, V., van der Flier, L. G., Cuppen, E., van Oudenaarden, A., & Clevers, H. (2015) · Cell Stem Cell · doi:10.1016/j.stem.2014.12.006 · Cited by 273
Self-citationNotum produced by Paneth cells attenuates regeneration of aged intestinal epithelium
Pentinmikko, N., Iqbal, S., Mana, M., Andersson, S., Cognetta, A. B., Suciu, R. M., Roper, J., Luopajärvi, K., Markelin, E., Gopalakrishnan, S., et al. (2019) · Nature · doi:10.1038/s41586-019-1383-0 · Cited by 271
Farin, H. F., Karthaus, W. R., Kujala, P., Rakhshandehroo, M., Schwank, G., Vries, R. G. J., Kalkhoven, E., Nieuwenhuis, E. E. S., & Clevers, H. C. (2014) · The Journal of Experimental Medicine · doi:10.1084/jem.20130753 · Cited by 275
Self-citationValenta, T., Değirmenci, B., Moor, A. E., Herr, P., Zimmerli, D., Moor, M. B., Hausmann, G., Cantù, C., Aguet, M., & Basler, K. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.03.088 · Cited by 266
Stable expansion of high‐grade serous ovarian cancer organoids requires a low‐Wnt environment
Hoffmann, K., Berger, H., Kulbe, H., Thillainadarasan, S., Mollenkopf, H., Żemojtel, T., TAUBE, E. T., Darb‐Esfahani, S., Mangler, M., Sehouli, J., et al. (2020) · The EMBO Journal · doi:10.15252/embj.2019104013 · Cited by 252
Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells
Voloshanenko, O., Erdmann, G., Dubash, T. D., Augustin, I., Metzig, M. O., Moffa, G., Hundsrucker, C., Kerr, G., Sandmann, T., Anchang, B., et al. (2013) · Nature Communications · doi:10.1038/ncomms3610 · Cited by 257
Fibroblast pathology in inflammatory diseases
Wei, K., Nguyen, H. N., & Brenner, M. B. (2021) · Journal of Clinical Investigation · doi:10.1172/jci149538 · Cited by 249
Burclaff, J., Bliton, R. J., Breau, K. A., Ok, M. T., Gomez-Martinez, I., Ranek, J. S., Bhatt, A. P., Purvis, J. E., Woosley, J. T., & Magness, S. T. (2022) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2022.02.007 · Cited by 242
Wnt/Catenin Signaling in Adult Stem Cell Physiology and Disease
Ring, A., Kim, Y., & Kahn, M. (2014) · Stem Cell Reviews and Reports · doi:10.1007/s12015-014-9515-2 · Cited by 245
Wang, L. L., Liu, Y., Chung, J. J., Wang, T., Gaffey, A. C., Lu, M., Cavanaugh, C. A., Zhou, S., Kanade, R., Atluri, P., et al. (2017) · Nature Biomedical Engineering · doi:10.1038/s41551-017-0157-y · Cited by 239
Snippert, H. J. G., Schepers, A. G., van Es, J. H., Simons, B. D., & Clevers, H. C. (2013) · EMBO Reports · doi:10.1002/embr.201337799 · Cited by 239
Self-citationMorphogenesis and maturation of the embryonic and postnatal intestine
Chin, A. M., Hill, D. R., Aurora, M., & Spence, J. R. (2017) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2017.01.011 · Cited by 236
Intestinal Regeneration: Regulation by the Microenvironment
Hageman, J. H., Heinz, M. C., Kretzschmar, K., van der Vaart, J., Clevers, H. C., & Snippert, H. J. G. (2020) · Developmental Cell · doi:10.1016/j.devcel.2020.07.009 · Cited by 225
Self-citationMichels, B. E., Mosa, M. H., Streibl, B. I., Zhan, T., Menche, C., Abou-El-Ardat, K., Darvishi, T., Członka, E., Wagner, S., Winter, J., et al. (2020) · Cell Stem Cell · doi:10.1016/j.stem.2020.04.003 · Cited by 222
Self-citationOpposing activities of Notch and Wnt signaling regulate intestinal stem cells and gut homeostasis
Tian, H., Biehs, B., Chiu, C., Siebel, C. W., Wu, Y., Costa, M., de Sauvage, F. J., & Klein, O. D. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.03.007 · Cited by 214
Cellular and molecular architecture of the intestinal stem cell niche
McCarthy, N., Kraiczy, J., & Shivdasani, R. A. (2020) · Nature Cell Biology · doi:10.1038/s41556-020-0567-z · Cited by 214
Fibroblasts and myofibroblasts of the intestinal lamina propria in physiology and disease
Roulis, M., & Flavell, R. A. (2016) · Differentiation · doi:10.1016/j.diff.2016.05.002 · Cited by 211
Mitochondrial function controls intestinal epithelial stemness and proliferation
Berger, E., Rath, E., Yuan, D., Waldschmitt, N., Khaloian, S., Allgäuer, M., Staszewski, O., Lobner, E. M., Schöttl, T., Giesbertz, P., et al. (2016) · Nature Communications · doi:10.1038/ncomms13171 · Cited by 209
The role of CSF1R-dependent macrophages in control of the intestinal stem-cell niche
Sehgal, A., Donaldson, D. S., Pridans, C., Sauter, K. A. D., Hume, D. A., & Mabbott, N. A. (2018) · Nature Communications · doi:10.1038/s41467-018-03638-6 · Cited by 208
Mini-Gut Organoids: Reconstitution of the Stem Cell Niche
Date, S., & Sato, T. (2015) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100814-125218 · Cited by 222
Signaling in the stem cell niche: regulating cell fate, function and plasticity
Chacón‐Martínez, C. A., Koester, J., & Wickström, S. A. (2018) · Development · doi:10.1242/dev.165399 · Cited by 197
Sancho, R., Cremona, C. A., & Behrens, A. (2015) · EMBO Reports · doi:10.15252/embr.201540188 · Cited by 210
Cellular Plasticity in Intestinal Homeostasis and Disease
Melo, F. D. S. E., & de Sauvage, F. J. (2018) · Cell stem cell · doi:10.1016/j.stem.2018.11.019 · Cited by 184
Shin, W., Hinojosa, C. D., Ingber, D. E., & Kim, H. J. (2019) · iScience · doi:10.1016/j.isci.2019.04.037 · Cited by 186
Intestinal Stem Cell Niche: The Extracellular Matrix and Cellular Components
Meran, L., Baulies, A., & Li, V. S. W. (2017) · Stem Cells International · doi:10.1155/2017/7970385 · Cited by 194
福田, 将., Mizutani, T., Mochizuki, W., Matsumoto, T., Nozaki, K., Sakamaki, Y., Ichinose, S., Okada, Y., Tanaka, T., Watanabe, M., et al. (2014) · Genes & Development · doi:10.1101/gad.245233.114 · Cited by 182
Stem Cells Marked by the R-Spondin Receptor LGR5
Koo, B., & Clevers, H. C. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.05.007 · Cited by 174
Self-citationThorne, C. A., Chen, I. W., Sanman, L. E., Cobb, M. H., Wu, L. F., & Altschuler, S. J. (2018) · Developmental Cell · doi:10.1016/j.devcel.2018.01.024 · Cited by 174
Jardé, T., Chan, W. H., Rossello, F. J., Kahlon, T. K., Theocharous, M., Arackal, T. K., Flores, T. J., Giraud, M., Richards, E., Chan, E., et al. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.06.021 · Cited by 163
Porcupine inhibitor suppresses paracrine Wnt-driven growth of Rnf43;Znrf3 -mutant neoplasia
Koo, B., van Es, J. H., van den Born, M., & Clevers, H. C. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1508113112 · Cited by 157
Self-citationLgr proteins in epithelial stem cell biology
Barker, N., Tan, S., & Clevers, H. C. (2013) · Development · doi:10.1242/dev.083113 · Cited by 159
Self-citationGonzalez, L. M., Williamson, I., Piedrahita, J. A., Blikslager, A. T., & Magness, S. T. (2013) · PLoS ONE · doi:10.1371/journal.pone.0066465 · Cited by 160
Mapping early fate determination in Lgr5+ crypt stem cells using a novel Ki67‐RFP allele
Başak, O., van den Born, M., Korving, J., Beumer, J., van der Elst, S., van Es, J. H., & Clevers, H. C. (2014) · The EMBO Journal · doi:10.15252/embj.201488017 · Cited by 163
Self-citationCRISPR/Cas 9 genome editing and its applications in organoids
Driehuis, E., & Clevers, H. C. (2017) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00410.2016 · Cited by 162
Self-citationPaneth cells in intestinal physiology and pathophysiology
Gaßler, N. (2017) · World Journal of Gastrointestinal Pathophysiology · doi:10.4291/wjgp.v8.i4.150 · Cited by 170
Gut organoids: mini-tissues in culture to study intestinal physiology and disease
Almeqdadi, M., Mana, M., Roper, J., & Yilmaz, Ö. H. (2019) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00300.2017 · Cited by 160
van der Hee, B., Loonen, L. M. P., Taverne, N., Taverne-Thiele, J. J., Smidt, H., & Wells, J. M. (2018) · Stem Cell Research · doi:10.1016/j.scr.2018.02.013 · Cited by 144
Gordon, S. (2015) · ALTEX · doi:10.14573/altex.1510051 · Cited by 145
Organoids in gastrointestinal diseases: From experimental models to clinical translation
Günther, C., Winner, B., Neurath, M. F., & Stappenbeck, T. S. (2022) · Gut · doi:10.1136/gutjnl-2021-326560 · Cited by 145
A high-throughput platform for stem cell niche co-cultures and downstream gene expression analysis
Gracz, A. D., Williamson, I., Roche, K. C., Johnston, M. J. G., Wang, F., Wang, Y., Attayek, P. J., Balowski, J., Liu, X. F., Laurenza, R. J., et al. (2015) · Nature Cell Biology · doi:10.1038/ncb3104 · Cited by 139
Frizzled7 Functions as a Wnt Receptor in Intestinal Epithelial Lgr5+ Stem Cells
Flanagan, D. J., Phesse, T. J., Barker, N., Schwab, R., Amin, N., Malaterre, J., Stange, D. E., Nowell, C. J., Currie, S. A., Saw, J. T. S., et al. (2015) · Stem Cell Reports · doi:10.1016/j.stemcr.2015.03.003 · Cited by 142
Self-citationLoss of Paneth Cell Autophagy Causes Acute Susceptibility to Toxoplasma gondii-Mediated Inflammation
Burger, E., Araujo, A. M., López-Yglesias, A. H., Rajala, M. W., Geng, L. N., Levine, B., Hooper, L. V., Burstein, E., & Yarovinsky, F. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.01.001 · Cited by 141
Establishment of Human Epithelial Enteroids and Colonoids from Whole Tissue and Biopsy
Mahé, M. M., Sundaram, N., Watson, C. L., Shroyer, N. F., & Helmrath, M. A. (2015) · Journal of Visualized Experiments · doi:10.3791/52483 · Cited by 143
Opposing Wnt signals regulate cervical squamocolumnar homeostasis and emergence of metaplasia
Chumduri, C., Gurumurthy, R. K., Berger, H., Dietrich, O., Kumar, N., Koster, S., Brinkmann, V., Hoffmann, K., Drabkina, M., Arampatzi, P., et al. (2021) · Nature Cell Biology · doi:10.1038/s41556-020-00619-0 · Cited by 133
Selenoprotein P influences colitis-induced tumorigenesis by mediating stemness and oxidative damage
Barrett, C. W., Reddy, V. K., Short, S. P., Motley, A. K., Lintel, M. K., Bradley, A. M., Freeman, T. J., Vallance, J. E., Wei, N., Parang, B., et al. (2015) · Journal of Clinical Investigation · doi:10.1172/jci76099 · Cited by 128
Altay, G., Larrañaga, E., Tosi, S., Barriga, F. M., Batlle, E., Fernández‐Majada, V., & Martínez, E. (2019) · Scientific Reports · doi:10.1038/s41598-019-46497-x · Cited by 141
A Wnt-Induced Phenotypic Switch in Cancer-Associated Fibroblasts Inhibits EMT in Colorectal Cancer
Mosa, M. H., Michels, B. E., Menche, C., Nicolas, A. M., Darvishi, T., Greten, F. R., & Farin, H. F. (2020) · Cancer Research · doi:10.1158/0008-5472.can-20-0263 · Cited by 136
Self-citationM2 Macrophages Activate WNT Signaling Pathway in Epithelial Cells: Relevance in Ulcerative Colitis
Cosín‐Roger, J., Ortiz‐Masiá, D., Calatayud, S., Hernández, C., Álvarez, Á., Hinojosa, J., Esplugues, J. V., & Barrachina, M. D. (2013) · PLoS ONE · doi:10.1371/journal.pone.0078128 · Cited by 131
Roman, A. K. S., Jayewickreme, C. D., Murtaugh, L. C., & Shivdasani, R. A. (2014) · Stem Cell Reports · doi:10.1016/j.stemcr.2013.12.012 · Cited by 133
Shp2/MAPK signaling controls goblet/paneth cell fate decisions in the intestine
Heuberger, J., Kosel, F., Qi, J., Grossmann, K. S., Rajewsky, K., & Birchmeier, W. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1309342111 · Cited by 131
Boj, S. F., Vonk, A. M., Statia, M., Su, J., Dekkers, J. F., Vries, R., Beekman, J. M., & Clevers, H. C. (2017) · Journal of Visualized Experiments · doi:10.3791/55159 · Cited by 138
Self-citationTales from the crypt: intestinal niche signals in tissue renewal, plasticity and cancer
Spit, M., Koo, B., & Maurice, M. M. (2018) · Open Biology · doi:10.1098/rsob.180120 · Cited by 125
Farin, H. F., Mosa, M. H., Ndreshkjana, B., Grebbin, B. M., Ritter, B., Menche, C., Kennel, K. B., Ziegler, P. K., Szabó, L., Bollrath, J., et al. (2023) · Cancer Discovery · doi:10.1158/2159-8290.cd-23-0050 · Cited by 120
Self-citation
Metadata
- Authors
- Farin, H. F., Van Es, J. H., & Clevers, H.
- Affiliations
- University Medical Center Utrecht (NL)
- Corresponding author
- Clevers, Hans
- Venue
- Gastroenterology
- Publisher
- Elsevier BV
- Published
- 2012-12
- Volume
- 143
- Issue
- 6
- Pages
- 1518-1529.e7
- ISSN
- 0016-5085 (ISSN-L)
- OpenAlex
- W2038714514
- Cited by
- 655
- References
- 55
- Citations by year
- 2026: 25 · 2025: 38 · 2024: 39 · 2023: 54 · 2022: 48 · 2021: 68 · 2020: 56 · 2019: 55 · 2018: 57 · 2017: 57 · 2016: 34 · 2015: 41 · 2014: 37 · 2013: 41 · 2012: 4
- FWCI
- 15.80
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Gastroenterology (publishedVersion)
- PubMed (publishedVersion)
- KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences) (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- KNAW research portal (Royal Academy of Art and Sciences (KNAW)) (submittedVersion)
- Funders
- European Molecular Biology Organization
- Top Institute Pharma
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Wnt/β-catenin signaling in development and cancer
- Health Sciences › Medicine › Gastroenterology › Digestive system and related health
- Health Sciences › Medicine › Oncology › Cancer Cells and Metastasis
- Keywords
- Wnt signaling, Wnt3, intestinal stem cells, Paneth cells, R-spondin, Atoh1, mesenchymal cells, intestinal homeostasis
- MeSH terms
- Animals, Cell Differentiation, Cells, Cultured, Epithelial Cells, Homeostasis, Intestine, Small, Mice, Transgenic, Stem Cells, Signal Transduction, Paneth Cells, Models, Animal, Mice, Wnt3 Protein, In Vitro Techniques
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review