Membrane proteomics of phagosomes suggests a connection to autophagy
Open accessAbstract
Phagocytosis is the central process by which macrophage cells internalize and eliminate infectious microbes as well as apoptotic cells. During maturation, phagosomes containing engulfed particles fuse with various endosomal compartments through the action of regulatory molecules on the phagosomal membrane. In this study, we performed a proteomic analysis of the membrane fraction from latex bead-containing (LBC) phagosomes isolated from macrophages. The profile, which comprised 546 proteins, suggests diverse functions of the phagosome and potential connections to secretory processes, toll-like receptor signaling, and autophagy. Many identified proteins were not previously known to reside in the phagosome. We characterized several proteins in LBC phagosomes that change in abundance on induction of autophagy, a process that has been previously implicated in the host defense against microbial pathogens. These observations suggest crosstalk between autophagy and phagocytosis that may be relevant to the innate immune response of macrophages.
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Proteomics analysis of purified phagosome membranes in cells that have taken up differing cargoes by phagocytosis revealed that absence of TLR signaling leads to failure of LC3 recruitment to phagosome membranes.
“Proteomics analysis of purified phagosome membranes in cells that have taken up differing cargoes by phagocytosis has revealed that the absence of TLR signaling leads to failure of LC3 recruitment to phagosome membranes [18,39].”
From LC3-Associated Phagocytosis (LAP): Connections with Host Autophagy (2012) · cites this paper as [39]
The Results and Discussion sections on validation and autophagy induction report proteomic identification of LC3-II on latex-bead phagosome membranes and show that 3-MA treatment abolished GFP-LC3 recruitment. They do not report a comparison of differing phagocytic cargoes or show that absence of TLR signaling caused recruitment to fail; the reported inhibition was attributed to PI3K inhibition. (LLM, conf=0.88)
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Stuart, L. M., & Ezekowitz, R. A. B. (2005) · Immunity · doi:10.1016/j.immuni.2005.05.002 · Cited by 667 · see citing works
Marion, S., Laurent, C., & Guillén, N. (2005) · Cellular Microbiology · doi:10.1111/j.1462-5822.2005.00573.x · Cited by 125 · see citing works
Proteomics Fingerprinting of Phagosome Maturation and Evidence for the Role of a Gα during Uptake
Gotthardt, D., Blancheteau, V., Bosserhoff, A., Ruppert, T., Delorenzi, M., & Soldati, T. (2006) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m600113-mcp200 · Cited by 98 · see citing works
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- [2]Underhill DM, Ozinsky A. Phagocytosis of microbes: complexity in action. Annu Rev Immunol. 2002;20:825–852. doi: 10.1146/annurev.immunol.20.103001.114744. [[DOI](https://doi.org/10.1146/annurev.immunol.20.103001.114744)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/11861619/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Annu%20Rev%20Immunol&title=Phagocytosis%20of%20microbes:%20complexity%20in%20action&author=DM%20Underhill&author=A%20Ozinsky&volume=20&publication_year=2002&pages=825-852&pmid=11861619&doi=10.1146/annurev.immunol.20.103001.114744&)] · DOI · Paper page
- [3]Jutras I, Desjardins M. Phagocytosis: at the crossroads of innate and adaptive immunity. Annu Rev Cell Dev Bi. 2005;21:511–527. doi: 10.1146/annurev.cellbio.20.010403.102755. [[DOI](https://doi.org/10.1146/annurev.cellbio.20.010403.102755)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/16212505/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Annu%20Rev%20Cell%20Dev%20Bi&title=Phagocytosis:%20at%20the%20crossroads%20of%20innate%20and%20adaptive%20immunity&author=I%20Jutras&author=M%20Desjardins&volume=21&publication_year=2005&pages=511-527&pmid=16212505&doi=10.1146/annurev.cellbio.20.010403.102755&)] · DOI
- [4]Desjardins M, Griffiths G. Phagocytosis: Latex leads the way. Curr Opin Cell Biol. 2003;15:498–503. doi: 10.1016/s0955-0674(03)00083-8. [[DOI](https://doi.org/10.1016/s0955-0674(03)00083-8)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/12892792/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Curr%20Opin%20Cell%20Biol&title=Phagocytosis:%20Latex%20leads%20the%20way&author=M%20Desjardins&author=G%20Griffiths&volume=15&publication_year=2003&pages=498-503&pmid=12892792&doi=10.1016/s0955-0674(03)00083-8&)] · DOI
- [5]Garin J, et al. The phagosome proteome: Insight into phagosome functions. J Cell Biol. 2001;152:165–180. doi: 10.1083/jcb.152.1.165. [[DOI](https://doi.org/10.1083/jcb.152.1.165)] [[PMC free article](/articles/PMC2193653/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/11149929/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Cell%20Biol&title=The%20phagosome%20proteome:%20Insight%20into%20phagosome%20functions&author=J%20Garin&volume=152&publication_year=2001&pages=165-180&pmid=11149929&doi=10.1083/jcb.152.1.165&)] · DOI
- [6]Rogers LD, Foster LJ. The dynamic phagosomal proteome and the contribution of the endoplasmic reticulum. Proc Natl Acad Sci USA. 2007;104:18520–18525. doi: 10.1073/pnas.0705801104. [[DOI](https://doi.org/10.1073/pnas.0705801104)] [[PMC free article](/articles/PMC2141809/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/18006660/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Proc%20Natl%20Acad%20Sci%20USA&title=The%20dynamic%20phagosomal%20proteome%20and%20the%20contribution%20of%20the%20endoplasmic%20reticulum&author=LD%20Rogers&author=LJ%20Foster&volume=104&publication_year=2007&pages=18520-18525&pmid=18006660&doi=10.1073/pnas.0705801104&)] · DOI
- [7]Jutras I, et al. Modulation of the phagosome proteome by interferon-gamma. Mol Cell Proteomics. 2008;7:697–715. doi: 10.1074/mcp.M700267-MCP200. [[DOI](https://doi.org/10.1074/mcp.M700267-MCP200)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/18156134/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Mol%20Cell%20Proteomics&title=Modulation%20of%20the%20phagosome%20proteome%20by%20interferon-gamma&author=I%20Jutras&volume=7&publication_year=2008&pages=697-715&pmid=18156134&doi=10.1074/mcp.M700267-MCP200&)] · DOI
- [8]Stuart LM, et al. A systems biology analysis of the Drosophila phagosome. Nature. 2007;445:95–101. doi: 10.1038/nature05380. [[DOI](https://doi.org/10.1038/nature05380)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17151602/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Nature&title=A%20systems%20biology%20analysis%20of%20the%20Drosophila%20phagosome&author=LM%20Stuart&volume=445&publication_year=2007&pages=95-101&pmid=17151602&doi=10.1038/nature05380&)] · DOI
- [11]Mizushima N, Levine B, Cuervo AM, Klionsky DJ. Autophagy fights disease through cellular self-digestion. Nature. 2008;451:1069–1075. doi: 10.1038/nature06639. [[DOI](https://doi.org/10.1038/nature06639)] [[PMC free article](/articles/PMC2670399/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/18305538/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Nature&title=Autophagy%20fights%20disease%20through%20cellular%20self-digestion&author=N%20Mizushima&author=B%20Levine&author=AM%20Cuervo&author=DJ%20Klionsky&volume=451&publication_year=2008&pages=1069-1075&pmid=18305538&doi=10.1038/nature06639&)] · DOI · Paper page
- [12]Shintani T, Klionsky DJ. Autophagy in health and disease: A double-edged sword. Science. 2004;306:990–995. doi: 10.1126/science.1099993. [[DOI](https://doi.org/10.1126/science.1099993)] [[PMC free article](/articles/PMC1705980/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15528435/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Science&title=Autophagy%20in%20health%20and%20disease:%20A%20double-edged%20sword&author=T%20Shintani&author=DJ%20Klionsky&volume=306&publication_year=2004&pages=990-995&pmid=15528435&doi=10.1126/science.1099993&)] · DOI
- [13]Levine B, Deretic V. Unveiling the roles of autophagy in innate and adaptive immunity. Nat Rev Immunol. 2007;7:767–777. doi: 10.1038/nri2161. [[DOI](https://doi.org/10.1038/nri2161)] [[PMC free article](/articles/PMC7097190/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17767194/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Nat%20Rev%20Immunol&title=Unveiling%20the%20roles%20of%20autophagy%20in%20innate%20and%20adaptive%20immunity&author=B%20Levine&author=V%20Deretic&volume=7&publication_year=2007&pages=767-777&pmid=17767194&doi=10.1038/nri2161&)] · DOI
- [14]Desjardins M, et al. Molecular characterization of phagosomes. J Biol Chem. 1994;269:32194–32200. [[PubMed](https://pubmed.ncbi.nlm.nih.gov/7798218/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Biol%20Chem&title=Molecular%20characterization%20of%20phagosomes&author=M%20Desjardins&volume=269&publication_year=1994&pages=32194-32200&pmid=7798218&)]
- [15]Desjardins M, Huber LA, Parton RG, Griffiths G. Biogenesis of phagolysosomes proceeds through a sequential series of interactions with the endocytic apparatus. J Cell Biol. 1994;124:677–688. doi: 10.1083/jcb.124.5.677. [[DOI](https://doi.org/10.1083/jcb.124.5.677)] [[PMC free article](/articles/PMC2119957/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/8120091/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Cell%20Biol&title=Biogenesis%20of%20phagolysosomes%20proceeds%20through%20a%20sequential%20series%20of%20interactions%20with%20the%20endocytic%20apparatus&author=M%20Desjardins&author=LA%20Huber&author=RG%20Parton&author=G%20Griffiths&volume=124&publication_year=1994&pages=677-688&pmid=8120091&doi=10.1083/jcb.124.5.677&)] · DOI · Paper page
- [16]Desjardins M, Nzala NN, Corsini R, Rondeau C. Maturation of phagosomes is accompanied by changes in their fusion properties and size-selective acquisition of solute materials from endosomes. J Cell Sci. 1997;110:2303–2314. doi: 10.1242/jcs.110.18.2303. [[DOI](https://doi.org/10.1242/jcs.110.18.2303)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/9378779/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Cell%20Sci&title=Maturation%20of%20phagosomes%20is%20accompanied%20by%20changes%20in%20their%20fusion%20properties%20and%20size-selective%20acquisition%20of%20solute%20materials%20from%20endosomes&author=M%20Desjardins&author=NN%20Nzala&author=R%20Corsini&author=C%20Rondeau&volume=110&publication_year=1997&pages=2303-2314&pmid=9378779&doi=10.1242/jcs.110.18.2303&)] · DOI
- [17]Claus V, et al. Lysosomal enzyme trafficking between phagosomes, endosomes, and lysosomes in J774 macrophages. Enrichment of cathepsin H in early endosomes. J Biol Chem. 1998;273:9842–9851. doi: 10.1074/jbc.273.16.9842. [[DOI](https://doi.org/10.1074/jbc.273.16.9842)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/9545324/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Biol%20Chem&title=Lysosomal%20enzyme%20trafficking%20between%20phagosomes,%20endosomes,%20and%20lysosomes%20in%20J774%20macrophages.%20Enrichment%20of%20cathepsin%20H%20in%20early%20endosomes&author=V%20Claus&volume=273&publication_year=1998&pages=9842-9851&pmid=9545324&doi=10.1074/jbc.273.16.9842&)] · DOI
- [18]Scianimanico S, et al. Impaired recruitment of the small GTPase rab7 correlates with the inhibition of phagosome maturation by Leishmania donovani promastigotes. Cell Microbiol. 1999;1:19–32. doi: 10.1046/j.1462-5822.1999.00002.x. [[DOI](https://doi.org/10.1046/j.1462-5822.1999.00002.x)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/11207538/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Cell%20Microbiol&title=Impaired%20recruitment%20of%20the%20small%20GTPase%20rab7%20correlates%20with%20the%20inhibition%20of%20phagosome%20maturation%20by%20Leishmania%20donovani%20promastigotes&author=S%20Scianimanico&volume=1&publication_year=1999&pages=19-32&pmid=11207538&doi=10.1046/j.1462-5822.1999.00002.x&)] · DOI
- [19]Duclos S, et al. Rab5 regulates the kiss and run fusion between phagosomes and endosomes and the acquisition of phagosome leishmanicidal properties in RAW 264.7 macrophages. J Cell Sci. 2000;113:3531–3541. doi: 10.1242/jcs.113.19.3531. [[DOI](https://doi.org/10.1242/jcs.113.19.3531)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/10984443/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Cell%20Sci&title=Rab5%20regulates%20the%20kiss%20and%20run%20fusion%20between%20phagosomes%20and%20endosomes%20and%20the%20acquisition%20of%20phagosome%20leishmanicidal%20properties%20in%20RAW%20264.7%20macrophages&author=S%20Duclos&volume=113&publication_year=2000&pages=3531-3541&pmid=10984443&doi=10.1242/jcs.113.19.3531&)] · DOI
- [20]Grosshans BL, Ortiz D, Novick P. Rabs and their effectors: Achieving specificity in membrane traffic. Proc Natl Acad Sci USA. 2006;103:11821–11827. doi: 10.1073/pnas.0601617103. [[DOI](https://doi.org/10.1073/pnas.0601617103)] [[PMC free article](/articles/PMC1567661/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/16882731/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Proc%20Natl%20Acad%20Sci%20USA&title=Rabs%20and%20their%20effectors:%20Achieving%20specificity%20in%20membrane%20traffic&author=BL%20Grosshans&author=D%20Ortiz&author=P%20Novick&volume=103&publication_year=2006&pages=11821-11827&pmid=16882731&doi=10.1073/pnas.0601617103&)] · DOI · Paper page
- [21]Chen YA, Scheller RH. SNARE-mediated membrane fusion. Nat Rev Mol Cell Biol. 2001;2:98–106. doi: 10.1038/35052017. [[DOI](https://doi.org/10.1038/35052017)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/11252968/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Nat%20Rev%20Mol%20Cell%20Biol&title=SNARE-mediated%20membrane%20fusion&author=YA%20Chen&author=RH%20Scheller&volume=2&publication_year=2001&pages=98-106&pmid=11252968&doi=10.1038/35052017&)] · DOI
- [22]Steegmaier M, Klumperman J, Foletti DL, Yoo JS, Scheller RH. Vesicle-associated membrane protein 4 is implicated in trans-Golgi network vesicle trafficking. Mol Biol Cell. 1999;10:1957–1972. doi: 10.1091/mbc.10.6.1957. [[DOI](https://doi.org/10.1091/mbc.10.6.1957)] [[PMC free article](/articles/PMC25394/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/10359608/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Mol%20Biol%20Cell&title=Vesicle-associated%20membrane%20protein%204%20is%20implicated%20in%20trans-Golgi%20network%20vesicle%20trafficking&author=M%20Steegmaier&author=J%20Klumperman&author=DL%20Foletti&author=JS%20Yoo&author=RH%20Scheller&volume=10&publication_year=1999&pages=1957-1972&pmid=10359608&doi=10.1091/mbc.10.6.1957&)] · DOI
- [23]Tran TH, Zeng Q, Hong W. VAMP4 cycles from the cell surface to the trans-Golgi network via sorting and recycling endosomes. J Cell Sci. 2007;120:1028–1041. doi: 10.1242/jcs.03387. [[DOI](https://doi.org/10.1242/jcs.03387)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17327277/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Cell%20Sci&title=VAMP4%20cycles%20from%20the%20cell%20surface%20to%20the%20trans-Golgi%20network%20via%20sorting%20and%20recycling%20endosomes&author=TH%20Tran&author=Q%20Zeng&author=W%20Hong&volume=120&publication_year=2007&pages=1028-1041&pmid=17327277&doi=10.1242/jcs.03387&)] · DOI
- [24]Barton GM. Viral recognition by Toll-like receptors. Semin Immunol. 2007;19:33–40. doi: 10.1016/j.smim.2007.01.003. [[DOI](https://doi.org/10.1016/j.smim.2007.01.003)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17336545/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Semin%20Immunol&title=Viral%20recognition%20by%20Toll-like%20receptors&author=GM%20Barton&volume=19&publication_year=2007&pages=33-40&pmid=17336545&doi=10.1016/j.smim.2007.01.003&)] · DOI
- [25]Bagshaw RD, Mahuran DJ, Callahan JW. A proteomic analysis of lysosomal integral membrane proteins reveals the diverse composition of the organelle. Mol Cell Proteomics. 2005;4:133–143. doi: 10.1074/mcp.M400128-MCP200. [[DOI](https://doi.org/10.1074/mcp.M400128-MCP200)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15579476/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Mol%20Cell%20Proteomics&title=A%20proteomic%20analysis%20of%20lysosomal%20integral%20membrane%20proteins%20reveals%20the%20diverse%20composition%20of%20the%20organelle&author=RD%20Bagshaw&author=DJ%20Mahuran&author=JW%20Callahan&volume=4&publication_year=2005&pages=133-143&pmid=15579476&doi=10.1074/mcp.M400128-MCP200&)] · DOI
- [26]Schindler C, Levy DE, Decker T. JAK-STAT signaling: From interferons to cytokines. J Biol Chem. 2007;282:20059–20063. doi: 10.1074/jbc.R700016200. [[DOI](https://doi.org/10.1074/jbc.R700016200)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17502367/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Biol%20Chem&title=JAK-STAT%20signaling:%20From%20interferons%20to%20cytokines&author=C%20Schindler&author=DE%20Levy&author=T%20Decker&volume=282&publication_year=2007&pages=20059-20063&pmid=17502367&doi=10.1074/jbc.R700016200&)] · DOI
- [27]Behrmann I, et al. Janus kinase (Jak) subcellular localization revisited: The exclusive membrane localization of endogenous Janus kinase 1 by cytokine receptor interaction uncovers the Jak. receptor complex to be equivalent to a receptor tyrosine kinase. J Biol Chem. 2004;279:35486–35493. doi: 10.1074/jbc.M404202200. [[DOI](https://doi.org/10.1074/jbc.M404202200)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15123646/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Biol%20Chem&title=Janus%20kinase%20(Jak)%20subcellular%20localization%20revisited:%20The%20exclusive%20membrane%20localization%20of%20endogenous%20Janus%20kinase%201%20by%20cytokine%20receptor%20interaction%20uncovers%20the%20Jak.%20receptor%20complex%20to%20be%20equivalent%20to%20a%20receptor%20tyrosine%20kinase&author=I%20Behrmann&volume=279&publication_year=2004&pages=35486-35493&pmid=15123646&doi=10.1074/jbc.M404202200&)] · DOI
- [28]Kabeya Y, et al. LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J. 2000;19:5720–5728. doi: 10.1093/emboj/19.21.5720. [[DOI](https://doi.org/10.1093/emboj/19.21.5720)] [[PMC free article](/articles/PMC305793/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/11060023/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=EMBO%20J&title=LC3,%20a%20mammalian%20homologue%20of%20yeast%20Apg8p,%20is%20localized%20in%20autophagosome%20membranes%20after%20processing&author=Y%20Kabeya&volume=19&publication_year=2000&pages=5720-5728&pmid=11060023&doi=10.1093/emboj/19.21.5720&)] · DOI · Paper page
- [29]Levine B, Klionsky DJ. Development by self-digestion: Molecular mechanisms and biological functions of autophagy. Dev Cell. 2004;6:463–477. doi: 10.1016/s1534-5807(04)00099-1. [[DOI](https://doi.org/10.1016/s1534-5807(04)00099-1)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15068787/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Dev%20Cell&title=Development%20by%20self-digestion:%20Molecular%20mechanisms%20and%20biological%20functions%20of%20autophagy&author=B%20Levine&author=DJ%20Klionsky&volume=6&publication_year=2004&pages=463-477&pmid=15068787&doi=10.1016/s1534-5807(04)00099-1&)] · DOI
- [30]Petiot A, Pattingre S, Arico S, Meley D, Codogno P. Diversity of signaling controls of macroautophagy in mammalian cells. Cell Struct Funct. 2002;27:431–441. doi: 10.1247/csf.27.431. [[DOI](https://doi.org/10.1247/csf.27.431)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/12576636/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Cell%20Struct%20Funct&title=Diversity%20of%20signaling%20controls%20of%20macroautophagy%20in%20mammalian%20cells&author=A%20Petiot&author=S%20Pattingre&author=S%20Arico&author=D%20Meley&author=P%20Codogno&volume=27&publication_year=2002&pages=431-441&pmid=12576636&doi=10.1247/csf.27.431&)] · DOI
- [31]Harris J, et al. T helper 2 cytokines inhibit autophagic control of intracellular Mycobacterium tuberculosis. Immunity. 2007;27:505–517. doi: 10.1016/j.immuni.2007.07.022. [[DOI](https://doi.org/10.1016/j.immuni.2007.07.022)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17892853/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Immunity&title=T%20helper%202%20cytokines%20inhibit%20autophagic%20control%20of%20intracellular%20Mycobacterium%20tuberculosis&author=J%20Harris&volume=27&publication_year=2007&pages=505-517&pmid=17892853&doi=10.1016/j.immuni.2007.07.022&)] · DOI
- [32]Stroikin Y, Dalen H, Loof S, Terman A. Inhibition of autophagy with 3-methyladenine results in impaired turnover of lysosomes and accumulation of lipofuscin-like material. Eur J Cell Biol. 2004;83:583–590. doi: 10.1078/0171-9335-00433. [[DOI](https://doi.org/10.1078/0171-9335-00433)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15679103/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Eur%20J%20Cell%20Biol&title=Inhibition%20of%20autophagy%20with%203-methyladenine%20results%20in%20impaired%20turnover%20of%20lysosomes%20and%20accumulation%20of%20lipofuscin-like%20material&author=Y%20Stroikin&author=H%20Dalen&author=S%20Loof&author=A%20Terman&volume=83&publication_year=2004&pages=583-590&pmid=15679103&doi=10.1078/0171-9335-00433&)] · DOI
- [33]Petiot A, Ogier-Denis E, Blommaart EF, Meijer AJ, Codogno P. Distinct classes of phosphatidylinositol 3′-kinases are involved in signaling pathways that control macroautophagy in HT-29 cells. J Biol Chem. 2000;275:992–998. doi: 10.1074/jbc.275.2.992. [[DOI](https://doi.org/10.1074/jbc.275.2.992)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/10625637/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Biol%20Chem&title=Distinct%20classes%20of%20phosphatidylinositol%203%E2%80%B2-kinases%20are%20involved%20in%20signaling%20pathways%20that%20control%20macroautophagy%20in%20HT-29%20cells&author=A%20Petiot&author=E%20Ogier-Denis&author=EF%20Blommaart&author=AJ%20Meijer&author=P%20Codogno&volume=275&publication_year=2000&pages=992-998&pmid=10625637&doi=10.1074/jbc.275.2.992&)] · DOI
- [34]Kabeya Y, et al. LC3, GABARAP, and GATE16 localize to autophagosomal membrane depending on form-II formation. J Cell Sci. 2004;117:2805–2812. doi: 10.1242/jcs.01131. [[DOI](https://doi.org/10.1242/jcs.01131)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15169837/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=J%20Cell%20Sci&title=LC3,%20GABARAP,%20and%20GATE16%20localize%20to%20autophagosomal%20membrane%20depending%20on%20form-II%20formation&author=Y%20Kabeya&volume=117&publication_year=2004&pages=2805-2812&pmid=15169837&doi=10.1242/jcs.01131&)] · DOI · Paper page
- [35]Fratti RA, Chua J, Vergne I, Deretic V. Mycobacterium tuberculosis glycosylated phosphatidylinositol causes phagosome maturation arrest. Proc Natl Acad Sci USA. 2003;100:5437–5442. doi: 10.1073/pnas.0737613100. [[DOI](https://doi.org/10.1073/pnas.0737613100)] [[PMC free article](/articles/PMC154363/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/12702770/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Proc%20Natl%20Acad%20Sci%20USA&title=Mycobacterium%20tuberculosis%20glycosylated%20phosphatidylinositol%20causes%20phagosome%20maturation%20arrest&author=RA%20Fratti&author=J%20Chua&author=I%20Vergne&author=V%20Deretic&volume=100&publication_year=2003&pages=5437-5442&pmid=12702770&doi=10.1073/pnas.0737613100&)] · DOI
- [36]Gutierrez MG, et al. Autophagy is a defense mechanism inhibiting BCG and Mycobacterium tuberculosis survival in infected macrophages. Cell. 2004;119:753–766. doi: 10.1016/j.cell.2004.11.038. [[DOI](https://doi.org/10.1016/j.cell.2004.11.038)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/15607973/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Cell&title=Autophagy%20is%20a%20defense%20mechanism%20inhibiting%20BCG%20and%20Mycobacterium%20tuberculosis%20survival%20in%20infected%20macrophages&author=MG%20Gutierrez&volume=119&publication_year=2004&pages=753-766&pmid=15607973&doi=10.1016/j.cell.2004.11.038&)] · DOI · Paper page
- [37]Alonso S, Pethe K, Russell DG, Purdy GE. Lysosomal killing of Mycobacterium mediated by ubiquitin-derived peptides is enhanced by autophagy. Proc Natl Acad Sci USA. 2007;104:6031–6036. doi: 10.1073/pnas.0700036104. [[DOI](https://doi.org/10.1073/pnas.0700036104)] [[PMC free article](/articles/PMC1851611/)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/17389386/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Proc%20Natl%20Acad%20Sci%20USA&title=Lysosomal%20killing%20of%20Mycobacterium%20mediated%20by%20ubiquitin-derived%20peptides%20is%20enhanced%20by%20autophagy&author=S%20Alonso&author=K%20Pethe&author=DG%20Russell&author=GE%20Purdy&volume=104&publication_year=2007&pages=6031-6036&pmid=17389386&doi=10.1073/pnas.0700036104&)] · DOI · Paper page
- [38]Gu S, et al. Comprehensive proteomic profiling of the membrane constituents of a Mycobacterium tuberculosis strain. Mol Cell Proteomics. 2003;2:1284–1296. doi: 10.1074/mcp.M300060-MCP200. [[DOI](https://doi.org/10.1074/mcp.M300060-MCP200)] [[PubMed](https://pubmed.ncbi.nlm.nih.gov/14532352/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Mol%20Cell%20Proteomics&title=Comprehensive%20proteomic%20profiling%20of%20the%20membrane%20constituents%20of%20a%20Mycobacterium%20tuberculosis%20strain&author=S%20Gu&volume=2&publication_year=2003&pages=1284-1296&pmid=14532352&doi=10.1074/mcp.M300060-MCP200&)] · DOI
- [39]Rez G, et al. Time course of vinblastine-induced autophagocytosis and changes in the endoplasmic reticulum in murine pancreatic acinar cells: A morphometric and biochemical study. Eur J Cell Biol. 1996;71:341–350. [[PubMed](https://pubmed.ncbi.nlm.nih.gov/8980904/)] [[Google Scholar](https://scholar.google.com/scholar_lookup?journal=Eur%20J%20Cell%20Biol&title=Time%20course%20of%20vinblastine-induced%20autophagocytosis%20and%20changes%20in%20the%20endoplasmic%20reticulum%20in%20murine%20pancreatic%20acinar%20cells:%20A%20morphometric%20and%20biochemical%20study&author=G%20Rez&volume=71&publication_year=1996&pages=341-350&pmid=8980904&)]
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- Authors
- Shui, W., Sheu, L., Liu, J., Smart, B., Petzold, C. J., Hsieh, T.-Y., Pitcher, A., Keasling, J. D., & Bertozzi, C. R.
- Affiliations
- Howard Hughes Medical Institute (US)
- Molecular and Cell Biology, and
- Biological Products Division, Bayer HealthCare LLC, Berkeley, CA 94701;
- Departments of Chemistry,
- Physical Bioscience Division, and
- Joint BioEnergy Institute (US)
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2008-11-04
- Volume
- 105
- Issue
- 44
- Pages
- 16952-16957
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2579359
- OpenAlex
- W2089438839
- Cited by
- 114
- References
- 3
- Citations by year
- 2026: 2 · 2025: 4 · 2024: 8 · 2023: 5 · 2022: 2 · 2021: 10 · 2020: 4 · 2019: 4 · 2018: 5 · 2017: 4 · 2016: 5 · 2015: 2 · 2014: 7 · 2013: 6 · 2012: 15
- FWCI
- 7.69
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- University of North Texas Digital Library (University of North Texas) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- Funders
- Howard Hughes Medical Institute
- National Institute of Allergy and Infectious Diseases (R01AI051622, AI 51622)
- Topics
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Life Sciences › Immunology and Microbiology › Immunology › Phagocytosis and Immune Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Keywords
- phagocytosis, autophagy, macrophages, phagosome maturation, endosomal membrane fusion, Toll-like receptor signaling, innate immunity, host defense against infection
- MeSH terms
- Animals, Autophagy, Cell Membrane, Macrophages, Membrane Proteins, Phagocytosis, Phagosomes, Proteome, Proteomics, Mice
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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