Spatiotemporally separable Shh domains in the midbrain define distinct dopaminergic progenitor pools
Open accessAbstract
Midbrain dopamine neurons (mDA) are important regulators of diverse physiological functions, including movement, attention, and reward behaviors. Accordingly, aberrant function of dopamine neurons underlies a wide spectrum of disorders, such as Parkinson's disease (PD), dystonia, and schizophrenia. The distinct functions of the dopamine system are carried out by neuroanatomically discrete subgroups of dopamine neurons, which differ in gene expression, axonal projections, and susceptibility in PD. The developmental underpinnings of this heterogeneity are undefined. We have recently shown that in the embryonic CNS, mDA originate from the midbrain floor plate, a ventral midline structure that is operationally defined by the expression of the molecule Shh. Here, we develop these findings to reveal that in the embryonic midbrain, the spatiotemporally dynamic Shh domain defines multiple progenitor pools. We deduce 3 distinct progenitor pools, medial, intermediate, and lateral, which contribute to different mDA clusters. The earliest progenitors to express Shh, here referred to as the medial pool, contributes neurons to the rostral linear nucleus and mDA of the ventral tegmental area/interfascicular regions, but remarkably, little to the substantia nigra pars compacta. The intermediate Shh+ progenitors give rise to neurons of all dopaminergic nuclei, including the SNpc. The last and lateral pool of Shh+ progenitors generates a cohort that populates the red nucleus, Edinger Westphal nucleus, and supraoculomotor nucleus and cap. Subsequently, these lateral Shh+ progenitors produce mDA. This refined ontogenetic definition will expand understanding of dopamine neuron biology and selective susceptibility, and will impact stem cell-derived therapies and models for PD.
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Midbrain dopamine neurons originate from the mesodiencephalic floorplate, a region at the ventral midline defined by Shh+ and Foxa2+ expression.
“These neurons originate from the mesodiencephalic floorplate (FP), a region at the ventral midline defined by the mRNA expression of Shh+ and Foxa2+ [67–73].”
From Classification of midbrain dopamine neurons using single-cell gene expression profiling approaches (2020) · cites this paper as [67]
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Cites
AGEING AND PARKINSON'S DISEASE: SUBSTANTIA NIGRA REGIONAL SELECTIVITY
FEARNLEY, J. M., & LEES, A. J. (1991) · Brain · doi:10.1093/brain/114.5.2283 · Cited by 3,529 · see citing works
Echelard, Y., Epstein, D. J., St-Jacques, B., Shen, L., Mohler, J., McMahon, J. A., & McMahon, A. P. (1993) · Cell · doi:10.1016/0092-8674(93)90627-3 · Cited by 2,154 · see citing works
Dopamine neuron systems in the brain: An update
Björklund, A., & Dunnett, S. B. (2007) · Trends in Neurosciences · doi:10.1016/j.tins.2007.03.006 · Cited by 1,777 · see citing works
The substantia nigra of the human brain
Damier, P., Hirsch, É. C., Agid, Y., & Graybiel, A. M. (1999) · Brain · doi:10.1093/brain/122.8.1437 · Cited by 1,772 · see citing works
Soldner, F., Hockemeyer, D., Beard, C., Gao, Q., Bell, G. W., Cook, E. G., Hargus, G., Blak, A., Cooper, O., Mitalipova, M., et al. (2009) · Cell · doi:10.1016/j.cell.2009.02.013 · Cited by 1,615 · see citing works
Kim, J., Auerbach, J. M., Rodríguez‐Gómez, J. A., Velasco, I., Gavin, D. K., Lumelsky, N. L., Lee, S., Nguyen, J., Sánchez‐Pernaute, R., Bankiewicz, K. S., et al. (2002) · Nature · doi:10.1038/nature00900 · Cited by 1,598 · see citing works
Self-citationEvidence for an Expansion-Based Temporal Shh Gradient in Specifying Vertebrate Digit Identities
Harfe, B. D., Scherz, P., Nissim, S., Tian, H., McMahon, A. P., & Tabin, C. J. (2004) · Cell · doi:10.1016/j.cell.2004.07.024 · Cited by 970 · see citing works
Identification of intrinsic determinants of midbrain dopamine neurons
Andersson, E., Tryggvason, U., Deng, Q., Friling, S., Alekseenko, Z., Robert, B., Perlmann, T., & Ericson, J. (2006) · Cell · doi:10.1016/j.cell.2005.10.037 · Cited by 587 · see citing works
Mendez, I. M., Sánchez‐Pernaute, R., Cooper, O., Viñuela, Á., Ferrari, D., Björklund, L., Dagher, A., & Ole Isacson, A. (2005) · Brain · doi:10.1093/brain/awh510 · Cited by 438 · see citing works
A second independent pathway for development of mesencephalic dopaminergic neurons requires Lmx1b
Smidt, M. P., Asbreuk, C. H. J., Cox, J. J., Chen, H., Johnson, R. L., & Burbach, J. P. H. (2000) · Nature Neuroscience · doi:10.1038/73902 · Cited by 394 · see citing works
How to make a mesodiencephalic dopaminergic neuron
Smidt, M. P., & Burbach, J. P. H. (2006) · Nature reviews. Neuroscience · doi:10.1038/nrn2039 · Cited by 356 · see citing works
<i>Sonic hedgehog</i> is not required for the induction of medial floor plate cells in the zebrafish
Schauerte, H. E., Eeden, F. J. M. V., Fricke, C., Odenthal, J., Strähle, U., & Haffter, P. (1998) · Development · doi:10.1242/dev.125.15.2983 · Cited by 349 · see citing works
Gerfen, C. R., Baimbridge, K. G., & Thibault, J. (1987) · Journal of Neuroscience · doi:10.1523/jneurosci.07-12-03935.1987 · Cited by 340 · see citing works
Ono, Y., Nakatani, T., Sakamoto, Y., Mizuhara, E., Minaki, Y., Kumai, M., Hamaguchi, A., Nishimura, M., Inoue, Y., Hayashi, H., et al. (2007) · Development · doi:10.1242/dev.02879 · Cited by 331 · see citing works
Smidt, M. P., Smits, S. M., Bouwmeester, H., Hamers, F. P. T., van der Linden, A. J. A., Hellemons, A. J. C. G. M., Graw, J., & Burbach, J. P. H. (2004) · Development · doi:10.1242/dev.01022 · Cited by 317 · see citing works
Cell Behaviors and Genetic Lineages of the Mesencephalon and Rhombomere 1
Zervas, M., Millet, S., Ahn, S., & Joyner, A. L. (2004) · Neuron · doi:10.1016/j.neuron.2004.07.010 · Cited by 292 · see citing works
Selective loss of dopaminergic neurons in the substantia nigra of Pitx3-deficient aphakia mice
Hwang, D. (2003) · Molecular Brain Research · doi:10.1016/s0169-328x(03)00162-1 · Cited by 257 · see citing works
The foxa2 gene controls the birth and spontaneous degeneration of dopamine neurons in old age
Kittappa, R., Chang, W. W., Awatramani, R. B., & McKay, R. D. G. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050325 · Cited by 251 · see citing works
Pattyn, A., Vallstedt, A., Dias, J. M., Samad, O. A., Krumlauf, R., Rijli, F., Brunet, J., & Ericson, J. (2003) · Genes & Development · doi:10.1101/gad.255803 · Cited by 247 · see citing works
Redefining the serotonergic system by genetic lineage
Jensen, P., Farago, A. F., Awatramani, R. B., Scott, M. M., Deneris, E. S., & Dymecki, S. M. (2008) · Nature Neuroscience · doi:10.1038/nn2050 · Cited by 244 · see citing works
Fate of Mesencephalic AHD2-Expressing Dopamine Progenitor Cells in Nurr1 Mutant Mice
Wallén, Å., Zetterström, R. H., Solomin, L., Arvidsson, M., Olson, L., & Perlmann, T. (1999) · Experimental Cell Research · doi:10.1006/excr.1999.4691 · Cited by 232 · see citing works
Brn-3.0 expression identifies early post-mitotic CNS neurons and sensory neural precursors
Fedtsova, N. G., & Turner, E. E. (1995) · Mechanisms of Development · doi:10.1016/0925-4773(95)00435-1 · Cited by 226 · see citing works
Efficient production of mesencephalic dopamine neurons by Lmx1a expression in embryonic stem cells
Friling, S., Andersson, E., Thompson, L. H., Jönsson, M. E., Hebsgaard, J. B., Nanou, E., Alekseenko, Z., Marklund, U., Kjellander, S., Volakakis, N., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902396106 · Cited by 225 · see citing works
Cryptic boundaries in roof plate and choroid plexus identified by intersectional gene activation
Awatramani, R., Soriano, P., Rodriguez, C., Mai, J. J., & Dymecki, S. M. (2003) · Nature Genetics · doi:10.1038/ng1228 · Cited by 215 · see citing works
Self-citationWnt antagonism of Shh facilitates midbrain floor plate neurogenesis
Joksimovic, M., Yun, B. A., Kittappa, R., Anderegg, A. M., Chang, W. W., Taketo, M. M., McKay, R. D. G., & Awatramani, R. B. (2009) · Nature Neuroscience · doi:10.1038/nn.2243 · Cited by 213 · see citing works
Self-citationTranscriptional control of midbrain dopaminergic neuron development
Ang, S. (2006) · Development · doi:10.1242/dev.02501 · Cited by 175 · see citing works
Joyner, A. L., & Zervas, M. (2006) · Developmental Dynamics · doi:10.1002/dvdy.20884 · Cited by 174 · see citing works
Otx dose-dependent integrated control of antero-posterior and dorso-ventral patterning of midbrain
Puelles, E., Acampora, D., Lacroix, E., Signore, M., Annino, A., Tuorto, F., Filosa, S., Corte, G., Wurst, W., Ang, S., et al. (2003) · Nature Neuroscience · doi:10.1038/nn1037 · Cited by 157 · see citing works
Molecular basis for catecholaminergic neuron diversity
Grimm, J., Mueller, A., Hefti, F., & Rosenthal, A. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0405340101 · Cited by 150 · see citing works
Identification of midbrain floor plate radial glia-like cells as dopaminergic progenitors
Bonilla, S., Hall, A. C., Pinto, L., Attardo, A., Götz, M., Huttner, W. B., & Arenas, E. (2008) · Glia · doi:10.1002/glia.20654 · Cited by 136 · see citing works
Slow progressive degeneration of nigral dopaminergic neurons in postnatal Engrailed mutant mice
Sgadó, P., Alberi, L. A., Gherbassi, D., Galasso, S. L., Ramakers, G. M. J., Alavian, K. N., Smidt, M. P., Dyck, R. H., & Simon, H. H. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602116103 · Cited by 134 · see citing works
Therapeutic cloning in individual parkinsonian mice
Tabar, V. S., Tomishima, M. J., Panagiotakos, G., Wakayama, S., Menon, J., Chan, B., Mizutani, E., Al-Shamy, G., Ohta, H., Wakayama, T., et al. (2008) · Nature Medicine · doi:10.1038/nm1732 · Cited by 118 · see citing works
Nakatani, T., Minaki, Y., Kumai, M., & Ono, Y. (2007) · Development · doi:10.1242/dev.02870 · Cited by 108 · see citing works
Transcriptional repression coordinates the temporal switch from motor to serotonergic neurogenesis
Jacob, J., Ferri, L., Milton, C. I., Prin, F., Pla, P., Lin, W., Gavalas, A., Ang, S., & Briscoe, J. (2007) · Nature Neuroscience · doi:10.1038/nn1985 · Cited by 90 · see citing works
Nkx6-1 controls the identity and fate of red nucleus and oculomotor neurons in the mouse midbrain
Prakash, N., Puelles, E., Freude, K., Trümbach, D., Omodei, D., Salvio, M. D., Sussel, L., Ericson, J., Sander, M., Simeone, A., et al. (2009) · Development · doi:10.1242/dev.031781 · Cited by 80 · see citing works
Jönsson, M. E., Ono, Y., Björklund, A., & Thompson, L. H. (2009) · Experimental Neurology · doi:10.1016/j.expneurol.2009.06.006 · Cited by 70 · see citing works
A role for midbrain arcs in nucleogenesis
Agarwala, S., & Ragsdale, C. W. (2002) · Development · doi:10.1242/dev.00179 · Cited by 68 · see citing works
Ligand-activated Flpe for temporally regulated gene modifications
Hunter, N. L., Awatramani, R. B., Farley, F. W., & Dymecki, S. M. (2005) · genesis · doi:10.1002/gene.20101 · Cited by 59 · see citing works
Self-citationFuture of Cell and Gene Therapies for Parkinson’s Disease
Isacson, O., & Kordower, J. (2008) · Annals of Neurology · doi:10.1002/ana.21473 · Cited by 52 · see citing works
Will Stem Cell Biology Generate New Therapies for Parkinson's Disease?
McKay, R. D. G., & Kittappa, R. (2008) · Neuron · doi:10.1016/j.neuron.2008.05.016 · Cited by 30 · see citing works
Self-citation
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Poulin, J.-F., Caronia, G., Hofer, C., Cui, Q., Helm, B., Ramakrishnan, C., Chan, C. S., Dombeck, D. A., Deisseroth, K., & Awatramani, R. (2018) · Nature Neuroscience · doi:10.1038/s41593-018-0203-4 · Cited by 423 · see citing works
Self-citationDefining midbrain dopaminergic neuron diversity by single-cell gene expression profiling
Poulin, J.-F., Zou, J., Drouin-Ouellet, J., Kim, K.-Y. A., Cicchetti, F., & Awatramani, R. B. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.008 · Cited by 352 · see citing works
Self-citationClassification of midbrain dopamine neurons using single-cell gene expression profiling approaches
Poulin, J.-F., Gaertner, Z., Moreno-Ramos, O. A., & Awatramani, R. (2020) · Trends in Neurosciences · doi:10.1016/j.tins.2020.01.004 · Cited by 238 · see citing works
Self-citationYan, C. H., Levesque, M., Claxton, S., Johnson, R. L., & Ang, S.-L. (2011) · The Journal of Neuroscience · doi:10.1523/jneurosci.1077-11.2011 · Cited by 144 · see citing works
Panman, L., Papathanou, M., Laguna, A., Oosterveen, T., Volakakis, N., Acampora, D., Kurtsdotter, I., Yoshitake, T., Kehr, J., Joodmardi, E., et al. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.07.016 · Cited by 143 · see citing works
Blaess, S., Bodea, G. O., Kabanova, A., Chanet, S., Mugniery, E., Derouiche, A., Stephen, D., & Joyner, A. L. (2011) · Neural Development · doi:10.1186/1749-8104-6-29 · Cited by 133 · see citing works
Development, wiring and function of dopamine neuron subtypes
Garritsen, O., van Battum, E. Y., Grossouw, L. M., & Pasterkamp, R. J. (2023) · Nature reviews. Neuroscience · doi:10.1038/s41583-022-00669-3 · Cited by 128 · see citing works
Anderegg, A., Lin, H.-P., Chen, J.-A., Caronia-Brown, G., Cherepanova, N., Yun, B., Joksimovic, M., Rock, J., Harfe, B. D., Johnson, R., et al. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003973 · Cited by 57 · see citing works
Self-citationLahti, L., Peltopuro, P., Piepponen, T. P., & Partanen, J. (2012) · Development · doi:10.1242/dev.071936 · Cited by 34 · see citing works
Smits, S. M., von Oerthel, L., Hoekstra, E. J., Burbach, J. P. H., & Smidt, M. P. (2013) · PLoS ONE · doi:10.1371/journal.pone.0076037 · Cited by 31 · see citing works
- Authors
- Joksimovic, M., Anderegg, A., Roy, A., Campochiaro, L., Yun, B., Kittappa, R., McKay, R., & Awatramani, R.
- Affiliations
- Northwestern University (US)
- National Institutes of Health (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2009-11-10
- Volume
- 106
- Issue
- 45
- Pages
- 19185-19190
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2776440
- OpenAlex
- W2027969818
- Cited by
- 121
- References
- 40
- Citations by year
- 2026: 3 · 2025: 5 · 2024: 5 · 2023: 5 · 2022: 4 · 2021: 9 · 2020: 6 · 2019: 6 · 2018: 1 · 2017: 6 · 2016: 2 · 2015: 15 · 2014: 10 · 2013: 11 · 2012: 17
- FWCI
- 3.33
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Hedgehog Signaling Pathway Studies
- Keywords
- midbrain dopaminergic neurons, Sonic hedgehog, Sonic hedgehog signaling, substantia nigra pars compacta, ventral tegmental area, red nucleus, Edinger-Westphal nucleus, Parkinson's disease
- MeSH terms
- Animals, Dopamine, Galactosides, Histocytochemistry, Indoles, Mesencephalon, Mice, Transgenic, Microscopy, Fluorescence, Models, Neurological, Neurons, Stem Cells, In Situ Hybridization, Protein Structure, Tertiary, Mice, Hedgehog Proteins
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