Rodent reservoirs of future zoonotic diseases
Open accessAbstract
Significance: Forecasting reservoirs of zoonotic disease is a pressing public health priority. We apply machine learning to datasets describing the biological, ecological, and life history traits of rodents, which collectively carry a disproportionate number of zoonotic pathogens. We identify particular rodent species predicted to be novel zoonotic reservoirs and geographic regions from which new emerging pathogens are most likely to arise. We also describe trait profiles—complexes of biological features—that distinguish reservoirs from nonreservoirs. Generally, the most permissive rodent reservoirs display a fast-paced life history strategy, maximizing near-term fitness by having many altricial young that begin reproduction early and reproduce frequently. These findings may constitute an important lead in guiding the search for novel disease reservoirs in the wild.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Han et al. found a similar pattern in rodents using host-pathogen associations for zoonotic diseases.
“Han et al. (22) found a similar pattern in rodents using host-pathogen associations for zoonotic diseases.”
From Impacts of biodiversity and biodiversity loss on zoonotic diseases (2021) · cites this paper as [22]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
R: A Language and Environment for Statistical Computing
R Core Team (2000) · doi:10.32614/r.manuals · Cited by 355,706 · see citing works
Terrestrial ecoregions of the world: a new map of life on Earth
Olson, D. M., Dinerstein, E., Wikramanayake, E. D., Burgess, N. D., Powell, G. V. N., Underwood, E. C., D'amico, J. A., Itoua, I., Strand, H. E., Morrison, J. C., et al. (2001) · BioScience · doi:10.1641/0006-3568(2001)051[0933:teotwa]2.0.co;2 · Cited by 8,488 · see citing works
Global trends in emerging infectious diseases
Jones, K. E., Patel, N. G., Levy, M. A., Storeygard, A., Balk, D., Gittleman, J. L., & Daszak, P. (2008) · Nature · doi:10.1038/nature06536 · Cited by 8,338 · see citing works
A working guide to boosted regression trees
Elith, J., Leathwick, J. R., & Hastie, T. (2008) · Journal of Animal Ecology · doi:10.1111/j.1365-2656.2008.01390.x · Cited by 6,484 · see citing works
Mammal Species of the World: A Taxonomic and Geographic Reference
Schmid, R., Wilson, D. E., & Reeder, D. M. (1993) · Taxon · doi:10.2307/1223169 · Cited by 5,384 · see citing works
Statistical Modeling: The Two Cultures (with comments and a rejoinder by the author)
Breiman, L. (2001) · Statistical Science · doi:10.1214/ss/1009213726 · Cited by 4,340 · see citing works
CLASSIFICATION AND REGRESSION TREES: A POWERFUL YET SIMPLE TECHNIQUE FOR ECOLOGICAL DATA ANALYSIS
De’ath, G., & Fabricius, K. (2000) · Ecology · doi:10.1890/0012-9658(2000)081[3178:cartap]2.0.co;2 · Cited by 3,125 · see citing works
Risk factors for human disease emergence
Taylor, L. H., Latham, S. M., & woolhouse, M. E. J. (2001) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2001.0888 · Cited by 2,835 · see citing works
Origins of major human infectious diseases
Wolfe, N. D., Dunavan, C. P., & Diamond, J. (2007) · Nature · doi:10.1038/nature05775 · Cited by 1,867 · see citing works
Wilson, D. E. (2005) · Johns Hopkins University Press eBooks · doi:10.56021/9780801882210 · Cited by 1,704 · see citing works
Jones, K. E., Bielby, J., Cardillo, M., Fritz, S. A., O'Dell, J., Orme, C. D. L., Safi, K., Sechrest, W., Boakes, E. H., Carbone, C., et al. (2009) · Ecology · doi:10.1890/08-1494.1 · Cited by 1,662 · see citing works
Host Range and Emerging and Reemerging Pathogens
Woolhouse, M. E. J., & Gowtage-Sequeria, S. (2005) · Emerging Infectious Diseases · doi:10.3201/eid1112.050997 · Cited by 1,586 · see citing works
Statistical modeling: The two cultures
Breiman, L. (2001) · Cited by 1,314 · see citing works
Climate Change and Infectious Diseases: From Evidence to a Predictive Framework
Altizer, S., Ostfeld, R. S., Johnson, P. T. J., Kutz, S. J., & Harvell, C. D. (2013) · Science · doi:10.1126/science.1239401 · Cited by 1,293 · see citing works
Global patterns of terrestrial vertebrate diversity and conservation
Jenkins, C. N., Pimm, S. L., & Joppa, L. N. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1302251110 · Cited by 1,093 · see citing works
Prediction and prevention of the next pandemic zoonosis.
Morse, S. S., Mazet, J. A., Woolhouse, M., Parrish, C. R., Carroll, D., Karesh, W. B., Zambrana-Torrelio, C., Lipkin, W. I., & Daszak, P. (2012) · The Lancet · doi:10.1016/s0140-6736(12)61684-5 · Cited by 1,070 · see citing works
Unhealthy Landscapes: Policy Recommendations on Land Use Change and Infectious Disease Emergence
Patz, J. A., Daszak, P., Tabor, G. M., Aguirre, A. A., Pearl, M., Epstein, J., Wolfe, N. D., Kilpatrick, A. M., Foufopoulos, J., Molyneux, D., et al. (2004) · Environmental Health Perspectives · doi:10.1289/ehp.6877 · Cited by 975 · see citing works
Ecology of zoonoses: natural and unnatural histories
Karesh, W. B., Dobson, A., Lloyd‐Smith, J. O., Lubroth, J., Dixon, M. A., Bennett, M. J., Aldrich, S., Harrington, T., Formenty, P., Loh, E. H., et al. (2012) · The Lancet · doi:10.1016/s0140-6736(12)61678-x · Cited by 950 · see citing works
Identifying Reservoirs of Infection: A Conceptual and Practical Challenge
Haydon, D. T., Cleaveland, S., Taylor, L. H., & Laurenson, M. K. (2002) · Emerging infectious diseases · doi:10.3201/eid0812.010317 · Cited by 879 · see citing works
A comparison of bats and rodents as reservoirs of zoonotic viruses: are bats special?
Luis, A. D., Hayman, D. T. S., O’Shea, T. J., Cryan, P. M., Gilbert, A. T., Pulliam, J. R. C., Mills, J. N., Timonin, M. E., Willis, C. K. R., Cunningham, A. A., et al. (2013) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2012.2753 · Cited by 710 · see citing works
Epidemic Dynamics at the Human-Animal Interface
Lloyd‐Smith, J. O., George, D. B., Pepin, K. M., Pitzer, V. E., Pulliam, J. R. C., Dobson, A. P., Hudson, P. J., & Grenfell, B. T. (2009) · Science · doi:10.1126/science.1177345 · Cited by 688 · see citing works
Seasonal changes in vertebrate immune activity: mediation by physiological trade-offs
Martin, L. B., Weil, Z. M., & Nelson, R. J. (2007) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2007.2142 · Cited by 575 · see citing works
Ecological Origins of Novel Human Pathogens
Woolhouse, M. E. J., & Gaunt, E. R. (2007) · Critical Reviews in Microbiology · doi:10.1080/10408410701647560 · Cited by 396 · see citing works
Multiple ecological pathways to extinction in mammals
Davidson, A. D., Hamilton, M. J., Boyer, A. G., Brown, J. H., & Ceballos, G. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0901956106 · Cited by 380 · see citing works
Assembling evidence for identifying reservoirs of infection
Viana, M. S., Mancy, R., Biek, R., Cleaveland, S., Cross, P. C., Lloyd‐Smith, J. O., & Haydon, D. T. (2014) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2014.03.002 · Cited by 318 · see citing works
Effects of environmental change on zoonotic disease risk: an ecological primer
Estrada‐Peña, A., Ostfeld, R. S., Peterson, A. T., Poulin, R., & de la Fuente, J. (2014) · Trends in Parasitology · doi:10.1016/j.pt.2014.02.003 · Cited by 280 · see citing works
Johnson, P. T. J., Rohr, J. R., Hoverman, J. T., Kellermanns, E., Bowerman, J., & Lunde, K. B. (2012) · Ecology Letters · doi:10.1111/j.1461-0248.2011.01730.x · Cited by 272 · see citing works
Infectious Diseases: Preparing for the Future
King, D. A., Peckham, C. S., Waage, J. K., Brownlie, J., & Woolhouse, M. E. J. (2006) · Science · doi:10.1126/science.1129134 · Cited by 252 · see citing works
IMMUNE DEFENSE AND REPRODUCTIVE PACE OF LIFE IN PEROMYSCUS MICE
Martin, L. B., Weil, Z. M., & Nelson, R. J. (2007) · Ecology · doi:10.1890/07-0060.1 · Cited by 151 · see citing works
Disease Ecology, Biodiversity, and the Latitudinal Gradient in Income
Bonds, M. H., Dobson, A. P., & Keenan, D. C. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001456 · Cited by 140 · see citing works
McFarlane, R. A., Sleigh, A. C., & McMichael, T. (2012) · EcoHealth · doi:10.1007/s10393-012-0763-9 · Cited by 130 · see citing works
Gottdenker, N. L., Chaves, L. F., Calzada, J. E., Saldaña, A., & Carroll, C. R. (2012) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0001884 · Cited by 128 · see citing works
Links Among Human Health, Animal Health, and Ecosystem Health
Rabinowitz, P. M., & Conti, L. (2013) · Annual Review of Public Health · doi:10.1146/annurev-publhealth-031912-114426 · Cited by 128 · see citing works
Life History and Demographic Drivers of Reservoir Competence for Three Tick-Borne Zoonotic Pathogens
Ostfeld, R. S., Levi, T., Jolles, A. E., Martin, L. B., Hosseini, P. R., & Keesing, F. (2014) · PLoS ONE · doi:10.1371/journal.pone.0107387 · Cited by 125 · see citing works
Universal scaling of production rates across mammalian lineages
Hamilton, M. J., Davidson, A. D., Sibly, R. M., & Brown, J. H. (2010) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2010.1056 · Cited by 80 · see citing works
Poverty, Disease, and the Ecology of Complex Systems
Ngonghala, C. N., Pluciński, M. M., Murray, M. B., Farmer, P. E., Barrett, C. B., Keenan, D. C., & Bonds, M. H. (2014) · PLoS Biology · doi:10.1371/journal.pbio.1001827 · Cited by 79 · see citing works
GIDEON: a comprehensive Web-based resource for geographic medicine
Berger, S. A. (2005) · International Journal of Health Geographics · doi:10.1186/1476-072x-4-10 · Cited by 43 · see citing works
Analysing Extinction Risk in Parrots using Decision Trees
Jones, M., Fielding, A. H., & Sullivan, M. (2006) · Biodiversity and Conservation · doi:10.1007/s10531-005-4316-1 · Cited by 42 · see citing works
Bordes, F., Herbreteau, V., Dupuy, S., Chaval, Y., Tran, A., & Morand, S. (2013) · Infection Ecology & Epidemiology · doi:10.3402/iee.v3i0.20178 · Cited by 40 · see citing works
Schwanz, L. E. (2008) · Functional Ecology · doi:10.1111/j.1365-2435.2008.01397.x · Cited by 27 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Host and viral traits predict zoonotic spillover from mammals
Olival, K. J., Hosseini, P. R., Zambrana-Torrelio, C., Ross, N., Bogich, T. L., & Daszak, P. (2017) · Nature · doi:10.1038/nature22975 · Cited by 1,130 · see citing works
Zoonotic host diversity increases in human-dominated ecosystems
Gibb, R., Redding, D. W., Chin, K. Q., Donnelly, C. A., Blackburn, T. M., Newbold, T., & Jones, K. E. (2020) · Nature · doi:10.1038/s41586-020-2562-8 · Cited by 880 · see citing works
Machine Learning for Healthcare: On the Verge of a Major Shift in Healthcare Epidemiology
Wiens, J., & Shenoy, E. S. (2018) · Clinical Infectious Diseases · doi:10.1093/cid/cix731 · Cited by 574 · see citing works
Global Patterns of Zoonotic Disease in Mammals
Han, B. A., Kramer, A. M., & Drake, J. M. (2016) · Trends in Parasitology · doi:10.1016/j.pt.2016.04.007 · Cited by 508 · see citing works
Self-citationGlobal shifts in mammalian population trends reveal key predictors of virus spillover risk
Johnson, C. K., Hitchens, P. L., Pandit, P. S., Rushmore, J., Evans, T. S., Young, C. C. W., & Doyle, M. M. (2020) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2019.2736 · Cited by 511 · see citing works
Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts
Mollentze, N., & Streicker, D. G. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1919176117 · Cited by 387 · see citing works
Impacts of biodiversity and biodiversity loss on zoonotic diseases
Keesing, F., & Ostfeld, R. S. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2023540118 · Cited by 367 · see citing works
Towards common ground in the biodiversity–disease debate
Rohr, J. R., Civitello, D. J., Halliday, F. W., Hudson, P. J., Lafferty, K. D., Wood, C. L., & Mordecai, E. A. (2019) · Nature Ecology & Evolution · doi:10.1038/s41559-019-1060-6 · Cited by 270 · see citing works
Biodiversity loss underlies the dilution effect of biodiversity
Halliday, F. W., Rohr, J. R., & Laine, A. (2020) · Ecology Letters · doi:10.1111/ele.13590 · Cited by 153 · see citing works
Are disease reservoirs special? Taxonomic and life history characteristics
Plourde, B. T., Burgess, T. L., Eskew, E. A., Roth, T. M., Stephenson, N., & Foley, J. E. (2017) · PLOS ONE · doi:10.1371/journal.pone.0180716 · Cited by 95 · see citing works
Wu, Z., Han, Y., Liu, B., Li, H., Zhu, G., Latinne, A., Dong, J., Sun, L., Su, H., Liu, L., et al. (2021) · Microbiome · doi:10.1186/s40168-020-00965-z · Cited by 92 · see citing works
Does land-use change increase the abundance of zoonotic reservoirs? Rodents say yes
Mendoza, H., Rubio, A. V., García-Peña, G. E., Suzán, G., & Simonetti, J. A. (2020) · European Journal of Wildlife Research · doi:10.1007/s10344-019-1344-9 · Cited by 74 · see citing works
Distinct spread of DNA and RNA viruses among mammals amid prominent role of domestic species
Wells, K., Morand, S., Wardeh, M., & Baylis, M. (2020) · Global Ecology and Biogeography · doi:10.1111/geb.13045 · Cited by 65 · see citing works
Wardeh, M., Sharkey, K. J., & Baylis, M. (2020) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2019.2882 · Cited by 36 · see citing works
- Authors
- Han, B. A., Schmidt, J. P., Bowden, S. E., & Drake, J. M.
- Affiliations
- Cary Institute of Ecosystem Studies (US)
- University of Georgia (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2015-05-18
- Volume
- 112
- Issue
- 22
- Pages
- 7039-7044
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC4460448
- OpenAlex
- W1917173555
- Semantic Scholar
- 553b4ddcc723c58bc88dd20730120991d0fa8c5e
- Cited by
- 629
- References
- 40
- Citations by year
- 2026: 48 · 2025: 66 · 2024: 88 · 2023: 72 · 2022: 65 · 2021: 81 · 2020: 61 · 2019: 47 · 2018: 34 · 2017: 34 · 2016: 21 · 2015: 11
- FWCI
- 35.75
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Zenodo (CERN European Organization for Nuclear Research)
- Funders
- Office of Extramural Research, National Institutes of Health (Postdoctoral Research Fellowship)
- Topics
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Zoonotic diseases and public health
- Health Sciences › Medicine › Infectious Diseases › Viral Infections and Outbreaks Research
- Physical Sciences › Environmental Science › Ecological Modeling › Species Distribution and Climate Change
- Keywords
- rodent reservoirs, zoonoses, host traits, range size, lifetime reproductive output, biogeography, emerging infectious diseases, disease prediction, machine learning prediction
- MeSH terms
- Age Factors, Animals, Artificial Intelligence, Disease Reservoirs, Forecasting, Geography, Humans, Population Density, Public Health, Regression Analysis, Reproduction, Rodentia, Sexual Maturation, Species Specificity, Zoonoses, Computational Biology, Geographic Mapping
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review