DNA Polymerases: Structural Diversity and Common Mechanisms

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Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA

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Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

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STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP

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An attempt to unify the structure of polymerases

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FUNCTION AND STRUCTURE RELATIONSHIPS IN DNA POLYMERASES

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Deciphering enzymatic potential in metagenomic reads through DNA language models

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Zebrafish Polymerase Theta and human Polymerase Theta: Orthologues with homologous function

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A single nucleotide mutation of BnaC05.POLIB creates yellow-white chimeric flower in Brassica napus

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DNA polymerase λ autoinhibition is relieved via Ku interaction during non-homologous end joining

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Magnesium cations assist with unpairing hydrogen-bonded 2-deoxyribose trinucleotides

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Fidelity of base-pair recognition by a 3′–5′ polymerase: mechanism of the Saccharomyces cerevisiae tRNAHis guanylyltransferase

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A Single Nonsynonymous Substitution in the RNA-Dependent RNA Polymerase of Potato virus Y Allows the Simultaneous Breakdown of Two Different Forms of Antiviral Resistance in Capsicum annuum

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In crystallo observation of active site dynamics and transient metal ion binding within DNA polymerases

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Non‐canonical amino acids uncover the significant impact of Tyr671 on Taq DNA polymerase catalytic activity

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Analysis and control of untemplated DNA polymerase activity for guided synthesis of kilobase-scale DNA sequences

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Purification of M-MLVH- RT on a 9-Aminoethyladenine-(1,6-diamine-hexane)-triazine Selected from a Combinatorial Library of dNTP-Mimetic Ligands

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DNA Polymerases: An Insight into Their Active Sites and Catalytic Mechanism

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Look Ma, no PCNA: how DNA polymerase ε synthesizes long stretches of DNA without a processivity factor

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Polymer dynamics: from synthetic polymers to proteins

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Crystal structure of a reverse polymerase

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Crucial role of a dicarboxylic motif in the catalytic center of yeast RNA polymerases

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AZT resistance alters enzymatic properties and creates an ATP-binding site in SFVmac reverse transcriptase

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Engineering Escherichia coli DNA polymerase III alpha for translesion synthesis

Sharma, R. (2010) · Cited by 2

Intrinsic Motions of DNA Polymerases Underlie Their Remarkable Specificity and Selectivity and Suggest a Hybrid Substrate Binding Mechanism

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An intermediate state of T7 RNA polymerase provides another pathway of nucleotide selection

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Non-Covalent Interactions between dUTP C5-Substituents and DNA Polymerase Decrease PCR Efficiency

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Three-way junction structure-mediated reverse transcription-free exponential amplification reaction for pathogen RNA detection

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Elvitegravir, A New HIV‐1 Integrase Inhibitor for Antiretroviral Therapy

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TERT Structure, Function, and Molecular Mechanisms

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Comparative Motile Mechanisms in Cells

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Elvitegravir: A Novel Monoketo Acid HIV‐1 Integrase Strand Transfer Inhibitor

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THE EFFECT OF MECHANICAL TENSION ON DNA POLYMERASE ACTIVITY STUDIED WITH A TWO-STATE MODEL

Shu, Y.-G., & Shi, H. (2007) · Modern Physics Letters B · doi:10.1142/s0217984907013468 · Cited by 2

From Sequence to Function

Sundström, M., Norin, M., & Edwards, A. M. (2005) · doi:10.1201/9780849361432-9 · Cited by 2

Eukaryotic DNA Polymerases

Cotterill, S., & Kearsey, S. E. (2009) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0001045.pub2 · Cited by 2

DNA polymerase I is an efficient reverse transcriptase that mediates RNA-templated DNA repair synthesisPreprint

Lowder, F. C., Kendal, A. H., & Simmons, L. A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.22.696026 · Cited by 2

Structural and Evolutionary Analysis of Proteins Endowed with a Nucleotidyltransferase, or Non-canonical Palm, Catalytic Domain

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Force fields matter in DNA pol η mechanistic analysis

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Monovalent ions aid catalysis of two-metal-ion dependent RNA editors

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Machine Learning Techniques for Computational Characterization of Protein-Associated Small Molecules with Therapeutic Relevance

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DNA polymerase I: structure, activity, and function in bacterial DNA replication and repair

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Prebiotic Organic Synthesis and the Emergence of Life: From the Miller Experiment to the Start of Biological Evolution

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Assays for RNA synthesis and replication by the hepatitis C virus

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Liposome mediated drug delivery for leukocyte adhesion deficieny I (LAD I): Targeting the mutated gene ITGB2 and expression of CD18 protein

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Single-molecule bioelectronics

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Transcription by RNA Polymerases: From Initiation to Elongation, Translocation and Strand Separation

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Comparative Analysis of DNA-Polymerases from Family A as a Tool to Search for Enzymes with New Properties

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Thg1 family 3′–5′ RNA polymerases as tools for targeted RNA synthesis

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Thermodynamic inference in molecular motors: A martingale approach

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Xeroderma Pigmentosum and the DNA Damage Response to Ultraviolet Light

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The Role of Telomeres and Telomere-associated Proteins as Components of Interactome in Cell-signaling Pathways

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Nanoscale Molecular Dynamics Simulation and Free Energy Decomposition of Hepatitis C Virus and its Interaction with GTP

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Progress toward an amplifiable metabolic label for DNA: conversion of 4-thiothymidine (4sT) to 5-methyl-2′-deoxycytidine and synthesis of a 4sT phosphorodiamidate prodrug

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Chemotherapeutic Intervention by Inhibiting DNA Polymerases

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Making Mutations is an Active Process: Methods to Examine DNA Polymerase Errors

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Structure and Reaction in the Active Site of Mammalian Adenylyl Cyclase

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The nuclease activity of the endogenous differentiation factor of the HL-60 cell line

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Eukaryotic DNA Polymerases

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Infidelity Out in the Open

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The Biology of Xeroderma Pigmentosum

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Solution Conformations and Structural Thermodynamics of Type I DNA Polymerases from Escherichia coli and Thermus aquaticus

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Structural Basis for DNA Replication and Uracil Repair in Phage A-Family DNA PolymerasesPreprint

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Studies of Proliferating Cell Nuclear Antigen Mutant Proteins Defective in Translesion Synthesis and Mismatch Repair

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Ribonucleotide errors, RNase HII, and ribonucleotide excision repair

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La réplication de l'ADN chez l'euryarchaea Pyrococcus Abyssi : mise en place et dynamique du complexe

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X‐ray Crystallography

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Biomimetic and Nonbiological Dinuclear M x + Complex‐Catalyzed Alcoholysis Reactions of Phosphoryl Transfer Reactions

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Therapie der chronischen Hepatitis B: Resistenzmechanismen gegen Hemmer der HBV-Polymerase

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Two Approaches to the Study of the Mechanism of the Transition Process from Initiation to Elongation in T7 Rna Polymerase

Redhu, S. K. (2023) · ScholarWorks@UMassAmherst (University of Massachusetts Amherst) · doi:10.7275/600269

Elvitegravir: Novel Quinolone HIV‐1 Integrase Strand Transfer Inhibitor

Shinkai, H., Sato, M., & Matsuzaki, Y. (2011) · doi:10.1002/9781118015377.ch15

Targeting RT Translocation

Beilhartz, G. L., Scarth, B. J., & Götte, M. (2013) · Springer eBooks · doi:10.1007/978-1-4614-7291-9_9

A design proposal of the reverse DNA polymerase (3'-5' direction)Preprint

Shi, P. (2013) · arXiv (Cornell University) · doi:10.48550/arxiv.1310.4073

The molecular basis of nucleotide recognition for T7 DNA polymerase

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Bacterial DNA Polymerases, Chemistry of

Pomerantz, R. T., & O’Donnell, M. E. (2008) · Wiley eBooks · doi:10.1002/9780470048672.wecb033

Precision Optical Measurements of DNA Structure and Synthesis

Ma, Z. (2008) · doi:10.7907/vknw-bs41

DNA Polymerases: Eukaryotic

Hübscher, U. (2005) · Encyclopedia of Life Sciences · doi:10.1038/npg.els.0005058

Chromosomal DNA Replication on a Protein “Chip”

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The characterisation of polymicrobial bacterial communities in the lower respiratory tract of individuals with chronic pulmonary disease

Purcell, P. (2013) · Northumbria Research Link (Northumbria University)

Synteza wybranych związków zawierających układ azanaftalenowy jako potencjalnych inhibitorów integrazy HIV oraz środków antyproliferacyjnych

Finster, J. (2007)

Mechanisms controlling DNA damage survival and mutation rates in budding yeast

Viberg, J. (2012) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

DNA POLYMERASE ,T HE MITOCHONDRIAL REPLICASE 1

Kaguni, L. S. (2004)

Exploring the Immunogenicity and Therapeutic Applications of Boranophosphate-modified RNA: siRNA and RNA Aptamers

Sharaf, M. L. (2011) · DukeSpace (Duke University)

MOLECULAR DYNAMIC SIMULATION OF DNA POLYMERASE I ITB-1 DOMAINS

Hertadi, R., & Akhmaloka, A. (2009)

Effec t of DNA Base Modific ation on Polymerase Chain Reaction Effic iency and Fidelity

Sikorsky, J. A. (2005)

REPLICATIVE DNA POLYMERASE ASSOCIATED B-SUBUNITS

Oulu, B. (2004)

GUEST COMMENTARY Ten Commandments: Lessons from the Enzymology of

Kornberg, A. (2000)

Replicative DNA polymerase associated B-subunits

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Mining a Chinese hyperthermophilic metagenome

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Time course analysis of complex enzyme systems

Rentergent, J. (2015) · Research Explorer (The University of Manchester)

Synchronization of DNA array replication kinetics

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Selection of Novel Eukaryotic DNA Polymerases by Mutagenesis and Genetic Complementation of Yeast

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Nucleic Acid Biosynthesis

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Organization, Replication, Transposition, and Repair of DNA

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Developing Engineered Polymerases for Practical Applications in Synthetic Biology

Dunn, M. R. (2015) · doi:10.13140/rg.2.1.1667.1204

Asymmetric Recognition of Nucleobase Features by DNA Polymerases

Lund, T. J. (2013) · CU Scholar (University of Colorado Boulder)

Investigating the role of UmuD in DNA polymerase regulation

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Probing the base stacking contributions during translesion DNA synthesis.

Devadoss, B. (2008) · OhioLink ETD Center (Ohio Library and Information Network)

The ligase detection reaction: the evolution of a mutation detection strategy

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DNA Replication, Repair, and Mutagenesis

Bhagavan, N. V. (2002) · Elsevier eBooks · doi:10.1016/b978-012095440-7/50026-3

Function of damage inducible DNA polymerase IV from Escherichia coli

Walsh, J. M. (2012) · Digital Repository Service (Northeastern University) · doi:10.17760/d20002936

Nucleic Acid Binding Thermodynamics and Functions of DNA Polymerases

Brown, H. S. (2013) · Louisiana State University · doi:10.31390/gradschool_dissertations.2650

DNA structural selectivity of binding by the Pol I DNA polymerases from Escherichia coli and Thermus aquaticus

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Thermodynamics of DNA binding and break repair by the Pol I DNA polymerases from Escherichia coli and Thermus aquaticus

Yang, Y. (2011) · doi:10.31390/gradschool_dissertations.3092

How DNA is Replicated

van Holde, K. E., & Zlatanova, J. S. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-812917-3.00008-5

Synthetic approaches to the understanding of DNA nucleobase methylation

Rana, J. (2015)

TT(N)mGCCTC inhibits archaeal family B DNA polymerases

Sun, S., Guo, W., Yang, J., Qiu, M. S., Zhu, X.-J., & Dai, Z. (2018) · Scientific Reports · doi:10.1038/s41598-018-20127-4

Structural Studies of Klenow Fragment: An Enzyme with Two Active SitesPreprint

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DNA Polymerase Structure and Mechanisms of Action

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DNA Replication Fidelity

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DNA-polimeraza: mehanizami kojima se ostvaruje visoka vjernost replikacije

Poljak, K. (2009)

Getting a grip on how DNA polymerases function.

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