Innate immune sensing of adeno-associated virus vectors
Open accessAbstract
Adeno-associated virus (AAV) based viral vectors are widely used in human gene therapy and form the basis of approved treatments for several genetic diseases. Immune responses to vector and transgene products, however, substantially complicate these applications in clinical practice. The role of innate immune recognition of AAV vectors was initially unclear, given that inflammatory responses early after vector administration were typically mild in animal models. However, more recent research continues to identify innate immune pathways that are triggered by AAV vectors and that serve to provide activation signals for antigen-presenting cells and initiation of adaptive immune responses. Sensing of the AAV genome by the endosomal DNA receptor toll-like receptor 9 (TLR9) promotes early inflammatory response and interferon expression. Thus, activation of the TLR9>MyD88 pathway in plasmacytoid dendritic cells (pDCs) leads to the conditioning of antigen cross-presenting DCs through type I interferon (IFN-I) and ultimately CD8 + T cell activation. Alternatively, pDCs may also promote CD8 + T cell responses in a TLR9-independent manner by the production of IL-1 cytokines, thereby activating the IL-1R1>MyD88 signaling pathway. AAV can induce cytokine expression in monocyte-derived DCs, which in turn increases antibody formation. Binding of AAV capsid to complement components likely further elevates B cell activation. At high systemic vector doses in humans and in non-human primates, AAV vectors can trigger complement activation, with contributions by classical and alternative pathways, leading to severe toxicities. Finally, evidence for activation of TLR2 by the capsid and of additional innate receptors for nucleic acids has been presented. These observations show that AAV vectors can initiate several and likely redundant innate immune pathways resulting in an exaggerated adaptive immune response.
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- Premisecitation
Chandler et al. found significant upregulation of mRNA transcripts of multiple innate sensors, including TLR9, cGAS, and STING, 7 days after subretinal AAV administration in mice.
“Chandler et al. found significant upregulation of mRNA transcripts of multiple innate sensors, including TLR9, cGAS, and STING, 7 days postsubretinal administration of AAV in mice.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [47] source
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- Premisecitation
Muscle gene transfer studies in mice showed vector dose-dependent effects on cellular immune responses to the transgene product, likely reflecting activation of multiple innate pathways.
“This conclusion is supported by muscle gene transfer studies in mice, which showed vector dose-dependent effects on cellular immune responses to the transgene product, likely reflecting activation of multiple innate pathways.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [34]
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- cites [35]
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- Interpretationcitation
A strong dependency of immune responses to AAV gene transfer on TLR2 has not been documented.
“Thus far, a strong dependency of immune responses to AAV gene transfer on TLR2 has not been documented.”
Quote in the paperNot a substantial claim0 of 3 sources checked - Interpretationcitation
Additional pathways likely mediate immune responses to AAV when TLR9 is inhibited.
“Chan et al. concluded that there might be additional pathways mediating these immune responses.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [33] source
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- Premisecitation
The complement arm of the immune system has been implicated in recent fatalities from high-dose systemic AAV administration in patients.
“Furthermore, the complement arm of the immune system has been implemented in recent fatalities in high-dose systemic AAV administration in patients.”
Quote in the paperNot a substantial claim0 of 3 sources checked
- Premisecitation
Incorporating a TLR9 inhibitory sequence in the AAV expression cassette reduced immune responses in murine and swine models.
“Furthermore, by incorporating a TLR9 inhibitory sequence in AAV expression cassette, Chan et al. have shown a reduced immune response in murine and swine models, representing an alternative strategy to the CpG depletion approach.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [33] source
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- Premisecitation
In a murine model of AAV liver gene transfer, Martino et al. showed increased TLR2 expression soon after administration of scAAV vector.
“In a murine model of AAV liver gene transfer, Martino et al. showed increased TLR2 expression soon after administration with scAAV vector.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [23] source
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- Interpretationreasoning
The negative charge and large surface area of AAV may contribute to immediate platelet activation following systemic infusion.
“The negative charge and large surface area of AAV may contribute to the immediate activation of platelets following systemic infusion.”
Quote in the paperNot a substantial claim - Premisecitation
CpG motifs in the vector genome promoted the emergence of a pDC-like myeloid cell population in mice that directly bound an antibody transgene product through Fc-FcγR interactions, reducing early expression of vector-encoded immunoglobulin.
“A recent study found that CpG motifs in the vector genome promoted the emergence of a pDC-like myeloid cell population in mice, which directly bound an antibody transgene product through Fc-FccR interactions, thereby reducing early expression of vector-encoded immunoglobulin.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [27] source
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- Interpretationnone given
Immune responses against AAV vectors and their transgene products substantially complicate clinical gene therapy applications.
“Immune responses to vector and transgene products, however, substantially complicate these applications in clinical practice.”
Quote in the paperSubstantial claim - Premisecitation
The configuration of the vector genome, in addition to CpG content, determines the magnitude of TLR9 signaling.
“Besides CpG contents, the configuration of the vector genome has been identified as a factor that determines the magnitude of TLR9 signaling.”
Quote in the paperSubstantial claim0 of 2 sources checked - Premisecitation
TLR9 was the first innate sensor identified as critical for AAV innate sensing.
“TLR9 was the first innate sensor that was identified to be critical for AAV innate sensing (Fig. 1).”
Quote in the paperNot a substantial claim - Premisecitation
TLR9-mediated innate immune responses appear largely independent of AAV capsid.
“TLR9-mediated innate immune responses appear largely independent of AAV capsid.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [23] source
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- Interpretationreasoning
Minimizing unmethylated CpG motifs in the AAV expression cassette would reduce TLR9 activation and related immune responses.
“Since unmethylated CpG motifs are the primary ligand for TLR9, minimizing the number of such motifs in the AAV expression cassette would reduce TLR9 activation and related immune responses.”
Quote in the paperSubstantial claim - Interpretationreasoning
AAV vectors can initiate several and likely redundant innate immune pathways that result in an exaggerated adaptive immune response.
“These observations show that AAV vectors can initiate several and likely redundant innate immune pathways resulting in an exaggerated adaptive immune response.”
Quote in the paperSubstantial claim - Interpretationreasoning
Activation of the TLR9>MyD88 pathway in plasmacytoid dendritic cells conditions antigen cross-presenting dendritic cells through type I interferon and ultimately leads to CD8+ T cell activation.
“Thus, activation of the TLR9>MyD88 pathway in plasmacytoid dendritic cells (pDCs) leads to the conditioning of antigen cross-presenting DCs through type I interferon (IFN-I) and ultimately CD8 + T cell activation.”
Quote in the paperSubstantial claim - Interpretationreasoning
Immunogenicity remains a major hurdle for the safety, durability, and efficacy of AAV gene therapy.
“Despite tremendous advancement and a bright future, AAV vectors are not yet a”
Quote in the paperSubstantial claim - Interpretationnone given
The extent to which these two pathways are activated and contribute to the response depends on target tissue and vector dose.
“The extent to which these are activated and contribute to the response depends on target tissue and vector dose.”
Quote in the paperSubstantial claim - Premisecitation
Adaptive immune responses to AAV capsid were independent of TLR2 in a murine model of muscle gene transfer.
“However, adaptive immune responses to the capsid were found to be independent of TLR2 in a murine model of muscle gene transfer.”
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- Premisecitation
Self-complementary AAV vectors may be more potent activators of TLR9-MyD88-mediated immune responses than single-stranded DNA genome vectors.
“However, these vectors may also be more potent in the activation of TLR9-MyD88 mediated immune responses than AAV vectors containing the ss-DNA genome.”
Quote in the paperSubstantial claim0 of 2 sources checked - Premiseown data
In a murine model of liver gene transfer, CD8+ T cell responses against a transgene product expressed in the liver can occur independently of TLR9 or IFN I and instead rely on IL-1R1>MyD88 signaling.
“In a murine model of liver gene transfer, we found that CD8 + T cell responses against a transgene product expressed in the liver can occur independent of TLR9 or IFN I and instead rely on IL-1R1>MyD88 signaling (Fig. 2).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] source
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- Premisecitation
Preclinical and clinical studies have shown that AAV-associated cellular responses to both capsid and transgene product are inversely related to the number of CpG motifs.
“Indeed, preclinical and clinical studies have demonstrated that AAV-associated cellular responses to both AAV capsid and transgene product are inversely related to the number of CpG motifs, thereby further consolidating the role of TLR9 innate sensing of AAV.”
Quote in the paperSubstantial claim0 of 3 sources checked - Interpretationnone given
In the context of AAV gene therapy, the AAV capsid is a potential PAMP that could activate the host innate immune system.
“In the context of AAV gene therapy, the AAV capsid is a potential PAMP that could activate the host innate immune system (Fig. 1).”
Quote in the paperSubstantial claim - Premisecitation
Various studies have reported upregulation and secretion of IL-1α and IL-1β cytokines in different disease models in the context of AAV gene therapy.
“In the context of AAV gene therapy, various studies have reported the upregulation and secretion of both IL-1a and IL-1b cytokines in different disease models.”
Quote in the paperNot a substantial claim0 of 3 sources checked - Premisecitation
Complement activation in that setting could be inhibited by the second-generation C3 modulator APL-9.
“Complement activation could be inhibited using a second-generation C3 modulator, APL-9.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [86] source
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- Premisecitation
Shao et al. provided in vitro evidence for transcription of the opposing strand, albeit at lower frequency than transgene mRNA.
“Shao et al. provided in vitro evidence for transcription of the opposing strand, albeit at lower frequency compared to the transgene mRNA.”
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- Interpretationreasoning
This pathway may partly explain why AAV vector administration tends to induce long-lived plasma cells that produce sustained high-titer anti-capsid antibodies.
“This pathway may explain, at least in part, why AAV vector administration tends to induce long-lived plasma cells, which produce sustained high-titer antibodies against capsid.”
Quote in the paperSubstantial claim - Interpretationcitation
Recombination between plus and minus strands during AAV replication may form genomes that may express dsRNA upon transduction and second-strand formation.
“Recombination between plus and minus strands during AAV replication may also form genomes that may express dsRNA upon transduction and second-strand formation.”
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- Premisecitation
Enzymatic degradation of IgG using IdeS significantly reduced complement activation.
“Enzymatic degradation of IgG (using IdeS enzyme from Streptococcus pyogenes) significantly reduced complement activation.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [87] source
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- Premisecitation
Mass spectrometry comparison of seropositive and seronegative samples showed that anti-AAV antibodies increased binding of viral particles to classical pathway complement proteins.
“Comparative analysis of mass spectrometry data from seropositive and seronegative samples showed that anti-AAV antibodies enhanced the binding of viral particles with complement proteins associated with the classical pathway.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [87] source
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- Premisecitation
Patients who received only corticosteroids had increased IgM and IgG levels on days 5 and 7, respectively.
“Patients receiving only corticosteroids had increased levels of IgM and IgG on days 5 and 7, respectively.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [89] source
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- Premisecitation
Emerging data from human iPSC-derived 2D and 3D CNS cultures point toward cGAS-STING pathway-mediated upregulation of pro-inflammatory cytokines.
“Although a wider role for the cGAS-STING pathway in the innate response to AAV or links to adaptive responses has not yet been established, emerging data from human induced pluripotent stem cell-derived 2-and 3-dimensional cultures of central nervous system cells point toward cGAS-STING pathway mediated upregulation of pro-inflammatory cytokines.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [48] source
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- Premisecitation
HeLa and hepatocyte-derived cell lines had upregulated MDA5 and IFN-β expression 6 days following AAV transduction.
“HeLa and hepatocyte-derived cell lines had upregulated MDA5 and IFN-b expression 6 days following AAV transduction.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [55] source
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- Premisenone given
AAV vector administration induces potent de novo IgM and IgG antibodies.
“In addition, administration of AAV vectors induces highly potent de novo IgM and IgG antibodies.”
Quote in the paperSubstantial claim - Interpretationreasoning
Immune complexes formed with AAV capsid would create targets for C3b deposition and complement activation.
“Formation of immune complexes with AAV capsid would generate potential targets for C3b deposition and therefore complement activation.”
Quote in the paperSubstantial claim - Premisecitation
Smith et al. and West et al. further consolidated evidence that preexisting anti-AAV antibodies contribute to complement activation.
“More recent studies by Smith et al. and West et al. further consolidated a contribution of preexisting anti-AAV antibodies in mediating complement activation.86,87”
Quote in the paperNot a substantial claim0 of 2 sources checked - Premiseown data
Classical pathway complement proteins C3a, C4a, and C5a, alternative pathway proteins Ba and Bb, and terminal complement complex SC5b-9 were elevated in patients who received only corticosteroids.
“Indeed, levels of complement proteins associated with classical (C3a, C4a, C5a) and alternative (Ba, Bb) pathways along with terminal complement complex SC5b-9 were found to be elevated in patients who only received corticosteroids.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [89] source
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- Interpretationreasoning
An IdeS-based strategy may help prevent complement-related immunotoxicities in clinical settings.
“This strategy may be helpful in preventing complement-related immunotoxicities in clinical settings.”
Quote in the paperSubstantial claim - Premisecitation
Thrombotic microangiopathy typically occurs 1 to 2 weeks after vector administration.
“TMA has typically occurred 1-2 weeks after vector administration.16”
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- Premisecitation
Using mouse embryonic fibroblasts, Chandler et al. showed improved AAV transduction in cGAS-/- fibroblasts.
“Furthermore, using mouse embryonic fibroblasts, the authors showed improved AAV transduction in fibroblasts derived from cGAS -/-mice.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [47] source
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- Interpretationreasoning
Complement-mediated immunotoxicities could be minimized in clinical settings by depleting B cells.
“Thus, complement-mediated immunotoxicities could be minimized in clinical settings using B cell depletion.”
Quote in the paperSubstantial claim - Premisecitation
In chimeric mice with mouse livers partially (~70%) reconstituted with human hepatocytes, Shao et al. showed about a 2-fold increase in gene expression of MDA5 and RIG-I.
“Furthermore, using chimeric mice in which mouse livers were partially (*70%) reconstituted with human hepatocytes, the authors showed about a 2-fold increase in gene expression of MDA5 and RIG-I.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [55] source
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- Premisecitation
AAV seropositivity is high worldwide, ranging from 40% to 70% depending on serotype, geography, or ethnicity.
“Worldwide, a high level of AAV seropositivity is observed (40-70% depending on the serotype, geographical location, or ethnicity).[83][84][85]”
Quote in the paperNot a substantial claim0 of 3 sources checked - Premisecitation
A clinical study of AAV gene transfer in Fabry disease reported atypical hemolytic uremic syndrome and thrombotic microangiopathy with elevated classical and alternative pathway complement proteins.
“For example, a clinical study on AAV gene transfer to patients with Fabry disease reported atypical hemolytic uremic syndrome and TMA associated with elevated levels of complement proteins of both classical and alternative pathways.93”
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- Premiseown data
Some patients in the corticosteroid-only group experienced thrombocytopenia, likely linked to complement activation.
“Some patients in this group experienced thrombocytopenia, likely linked to complement activation.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [89] source
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- Premisecitation
Salabarria et al. evaluated the kinetics and effects of immune modulation on complement activation in patients who received high systemic AAV doses.
“Salabarria et al. evaluated the kinetics and effects of immune modulation on complement activation in groups of patients who received high systemic doses of AAV989.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [89] source
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- Premisecitation
Clinical studies in Duchenne muscular dystrophy, in which seronegative patients received high-dose AAV, suggest that IgM formation could still cause significant immunotoxicities.
“Clinical studies in patients with Duchenne muscular dystrophy (DMD), where seronegative patients were administered with high dose AAV, suggest that IgM formation could still cause significant immunotoxicities.88,89”
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- cites [89] source
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- Premisecitation
Unlike the human experience, primates showed a wider spectrum of coagulation dysregulation, ranging from disseminated intravascular coagulation to thrombotic microangiopathy.
“In contrast to the human experience, the primates exhibited a wider spectrum of dysregulation of coagulation, ranging from disseminated intravascular coagulation to TMA.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [96] source
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- Premisenone given
Within hours of AAV administration, endosomal TLR9 in plasmacytoid dendritic cells recognizes the AAV genome and drives transient IFN-I and pro-inflammatory cytokine expression such as TNF-a and IL-6.
“Within hours of AAV administration, endosomal TLR9 in pDCs recognize the AAV genome and drive the transient expression of IFN I and pro-inflammatory cytokines such as TNF-a and IL-6.”
Quote in the paperNot a substantial claim - Premisenone given
Kupffer cell numbers start to increase around day 7.
“Number of KCs start to increase around day 7.”
Quote in the paperNot a substantial claim - Premisereasoning
These peptides are loaded onto MHC molecules and presented to T cells to initiate adaptive immune responses against capsid.
“These peptides are loaded onto MHC molecules and transported to the plasma membrane, where they are presented to T cells in order to initiate adaptive immune responses against the capsid.”
Quote in the paperSubstantial claim - Premisenone given
Other cell types, including Kupffer cells, conventional dendritic cells, and T cells, also play important roles in mediating these cellular responses.
“Other cell types, including KCs, cDCs, and T cells, also play an important role in mediating these cellular responses.”
Quote in the paperSubstantial claim - Interpretationreasoning
The primate study shows that the alternative pathway can contribute to severe toxicities, including liver injury.
“Nonetheless, this study shows the potential for the alternative pathway to contribute to severe toxicities, including liver injury.”
Quote in the paperSubstantial claim - Premisereasoning
Cellular clusters involving plasmacytoid dendritic cells, Kupffer cells, XCR1+ conventional dendritic cells, and T cells form between days 7 and 14 and lead to T cell priming.
“Cellular clusters involving pDCs, KCs, XCR1 + cDCs, and T cells are formed between days 7 and 14, leading to the priming of T cells (D).”
Quote in the paperSubstantial claim - Premisereasoning
AAVs opsonized with C3b are recognized by complement receptors on various antigen-presenting cells, including dendritic cells, macrophages, and B cells.
“AAVs opsonized with C3b are also recognized by various complement receptors present on the surface of a variety of APCs (including DCs, macrophages, and B cells).”
Quote in the paperSubstantial claim - Interpretationreasoning
Blocking innate signaling may not be able to prevent adaptive responses completely.
“It may not be possible to prevent adaptive responses entirely by blocking innate signaling.”
Quote in the paperSubstantial claim - Premisenone given
TLR2 and TLR9 recruit MyD88, which promotes IFN-I and pro-inflammatory cytokine secretion.
“TLR2 and 9 recruit the downstream adaptor molecule MyD88, which promotes the secretion of IFN-I and pro-inflammatory cytokines.”
Quote in the paperNot a substantial claim - Premisenone given
Plasmacytoid dendritic cells, Kupffer cells, XCR1+ conventional dendritic cells, and T cells respond to increased IL-1 by transiently upregulating IL-1R1.
“Along with pDCs, KCs, XCR1 + cDCs, and T cells respond to increased IL-1 levels by transiently upregulating the surface expression IL-1R1.”
Quote in the paperSubstantial claim - Premisenone given
Plasmacytoid dendritic cells are central to activating both TLR9 and IL-1R1 signaling after AAV liver gene transfer.
“pDCs are central to the activation of both TLR9 and IL-1R1 signaling upon AAV liver gene transfer.”
Quote in the paperSubstantial claim - Premisecitation
Hordeaux et al. reported high-dose-related immunotoxicities in nonhuman primates within 3 days of systemic vector administration.
“A recent study by Hordeaux et al. reported high-dose related immunotoxicities in nonhuman primates within 3 days of systemic vector administration.96”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [96] source
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- May combine two claims. 55
- Classified as probably not a substantial claim. 20
- The quote only partly states this claim. 1
May combine two claims.
PremisecitationDampening IL-1R1 signaling had a mild effect on transgene-specific antibodies but not on capsid-specific antibodies.
“Interestingly, dampening IL-1R1 signaling had a mild effect on transgene-specific antibodies but not on capsid-specific antibodies.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [38] source
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InterpretationcitationAAV capsids undergo proteosome-mediated degradation in the cytoplasm, which may expose packaged genomes to cytoplasmic DNA sensors.
“AAV capsids undergo proteosome-mediated degradation in the cytoplasm, which may expose the packaged genomes to cytoplasmic DNA sensors.”
Quote in the paperSubstantial claim0 of 3 sources checkedMay combine two claims.
InterpretationreasoningAt high doses, host antiviral factors such as innate sensors would detect AAV-associated molecular signatures, initiating immunological reactions that may cause immunotoxicity and render gene transfer ineffective.
“At such high doses, host antiviral factors such as innate sensors would readily detect molecular signatures associated with AAV or the infection process, thereby initiating a cascade of immunological reactions that may cause immunotoxicity and ultimately render gene transfer ineffective.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationTLR2 deficiency had a modest effect on CD8+ T cell and antibody formation against the transgene product in hepatic gene transfer in mice, resulting in somewhat elevated circulating transgene product.
“A recent study found that TLR2 deficiency had a modest effect on CD8 + T cell and antibody formation against the transgene product in hepatic gene transfer in mice, resulting in somewhat elevated levels of circulating transgene product.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [38] source
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Premisenone givenThe endosomal DNA sensor TLR9 recognizes the AAV genome and promotes early inflammatory responses and interferon expression.
“Sensing of the AAV genome by the endosomal DNA receptor toll-like receptor 9 (TLR9) promotes early inflammatory response and interferon expression.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Interpretationnone givenBinding of AAV capsid to complement components likely further elevates B cell activation.
“Binding of AAV capsid to complement components likely further elevates B cell activation.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningUpregulation of innate sensors and cytokines can be mediated by cytokines such as IFN I, so mere upregulation may not indicate direct involvement.
“It should be emphasized that upregulation of various innate sensors and cytokines is mediated by cytokines such as IFN I, and therefore, a mere upregulation might not be indicative of direct involvement.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningAt least two innate signaling pathways promote CD8+ T cell activation in AAV gene transfer: TLR9>MyD88>IFN I>IFNαR and IL-1α/β>IL-1R1>MyD88.
“In summary, at least two innate signaling pathways exist that promote the activation of CD8 + T cell responses in AAV gene transfer, namely TLR9>MyD88>IFN I>IFNaR and IL-1a/b>IL-1R1>MyD88.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenEvidence has been presented for activation of TLR2 by AAV capsid and for additional innate receptors for nucleic acids.
“Finally, evidence for activation of TLR2 by the capsid and of additional innate receptors for nucleic acids has been presented.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenAt high systemic vector doses in humans and non-human primates, AAV vectors can trigger complement activation through classical and alternative pathways, leading to severe toxicities.
“At high systemic vector doses in humans and in non-human primates, AAV vectors can trigger complement activation, with contributions by classical and alternative pathways, leading to severe toxicities.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningActivated platelets subsequently contribute to the innate response and endothelial injury.
“The activated platelets subsequently contribute to the innate response and endothelial injury.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationKuranda et al. showed induction of pro-inflammatory cytokines IL-6 and IL-1β upon exposure of human PBMCs to empty AAV capsid, but did not directly implicate TLR2.
“Although Kuranda et al. showed induction of pro-inflammatory cytokines IL-6 and IL-1b upon exposure of human PBMCs with empty AAV capsid, they did not directly implicate TLR2 for this pro-inflammatory milieu.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [37] source
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Premisenone givenAAV can induce cytokine expression in monocyte-derived dendritic cells, which in turn increases antibody formation.
“AAV can induce cytokine expression in monocyte-derived DCs, which in turn increases antibody formation.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAlthough AAV is substantially less inflammatory than many other viral vectors, treatments may require high vector doses up to 10^14 vg/kg, particularly for systemic administration.
“Although AAV is substantially less inflammatory compared with many other viral vectors, treatments may require administration of high vector doses of up to 10 14 vg/ kg, in particular for applications that depend on systemic vector administration.”
Quote in the paperSubstantial claim0 of 3 sources checkedMay combine two claims.
PremisecitationAt high vector doses, immune responses still occurred despite TLR9 inhibition; in macaques injected intravitreally, TLR9 inhibition merely delayed immune-mediated clinical uveitis.
“However, immune responses were still observed at high vector doses, for instance, in macaques injected through intravitreal route.TLR9 inhibition merely delayed immune-mediated clinical uveitis in these experimental animals.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [33] source
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PremisecitationBoth IL-1α and IL-1β contribute to this IL-1R1-dependent CD8+ T cell response, with IL-1α perhaps having a greater contribution, and the response can be blunted by blocking IL-1 signaling.
“Both IL-1a and IL-1b contribute to this response (with IL-1a having a perhaps greater contribution), which can be blunted by blocking IL-1 signaling.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [38] source
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PremisecitationThese IL-1R1-dependent responses did not require inflammasomes, consistent with earlier observations that AAV vectors are ineffective in activating inflammasomes.
“Interestingly, these responses did not require inflammasomes, consistent with earlier observations that AAV vectors are ineffective in activating inflammasomes.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [23] source
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PremisecitationTLR9-dependent reduction of dendritic length and complexity and disruption of synaptic transmission occurred in mouse somatosensory cortex after AAV gene transfer, accompanied by changes in AMPA receptor subunit composition and prevented by TLR9 blockade.
“Another recent investigation reports TLR9-dependent reduction of dendritic length and complexity and disruption of synaptic transmission in mouse somatosensory cortex in response to AAV gene transfer, which was accompanied by changes in AMPA receptor subunit composition but could be prevented by TLR9 blockade.”
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PremisecitationIn murine models and human PBMC cultures, plasmacytoid dendritic cells but not conventional dendritic cells or macrophages respond to the AAV genome through the TLR9-MyD88 pathway, producing IFN I that promotes adaptive immune responses against AAV capsid and transgene products.
“Zhu et al., using murine model and in vitro cultures of human peripheral blood mononuclear cells (PBMCs) demonstrated that pDCs but not conventional DCs (cDCs) or macrophages respond to the AAV genome through TLR9-MyD88 pathway leading to production of IFN I, which promotes adaptive immune responses against AAV capsid, as well as AAV encoded transgene products.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [22] source
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InterpretationcitationThe TLR9-MyD88 pathway is an important component of innate immune sensing of AAV, driving early innate inflammation and IFN I production in tissue, promoting CD8+ T cell activation, and modifying antibody responses.
“Since this initial discovery, the TLR9-MyD88 pathway has been consolidated as an important component of innate immune sensing of AAV, driving early innate inflammation and IFN I production in the tissue, promoting CD8 + T cell activation, and modifying antibody responses.”
Quote in the paperSubstantial claim0 of 3 sources checkedProbably not a substantial claim: may not pass S4 (based).
Interpretationnone givenPlasmacytoid dendritic cells can promote CD8+ T cell responses independently of TLR9 by producing IL-1 cytokines that activate IL-1R1>MyD88 signaling.
“Alternatively, pDCs may also promote CD8 + T cell responses in a TLR9-independent manner by the production of IL-1 cytokines, thereby activating the IL-1R1>MyD88 signaling pathway.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAAV ITRs have intrinsic low-level transcriptional activity and therefore could potentially generate complementary RNA strands.
“AAV ITRs are known to have intrinsic low-level transcriptional activity, 52,53 therefore could potentially generate complementary strands of RNAs.”
Quote in the paperSubstantial claim0 of 2 sources checkedMay combine two claims.
PremisecitationTransient inhibition of MDA5 and its downstream adaptor MAVS in HeLa cells increased transgene expression, presumably by preventing IFN-β expression.
“Transient inhibition of MDA5 and its downstream adaptor mitochondrial antiviral signaling (MAVS) in HeLa cells was able to increase the transgene expression, presumably by preventing IFN-b expression.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [55] source
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Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Interpretationnone givenWhether dsRNA expression plays a significant role in AAV gene transfer is not yet clear, and no links to adaptive immune responses or tissue inflammation have been established.
“Whether dsRNA expression plays a significant role in AAV gene transfer is not yet clear, and no links to adaptive immune responses or tissue inflammation have been established.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningComplement activation in tissue may raise interstitial fluid and lead to organ dysfunction, particularly in the heart.
“Tissue level complement activation may increase interstitial fluid and lead to organ dysfunction, especially in the heart.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Premisenone givenC3b binding to C3 convertase forms C5 convertase, which cleaves C5 into C5a and C5b.
“Association of C3b to C3 convertase leads to the formation of C5 convertase (C4b2a3b for classical and lectin pathways; C3bBb3b for the alternative pathway), which cleaves C5 to anaphylatoxin C5a and opsonin C5b.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSeveral other studies showed no effect of STING deficiency on B or T cell responses.
“Several other studies showed no effect of STING deficiency on B or T cell responses.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [26] source
Not checked in the free run.
- cites [35]
Not checked in the free run.
May combine two claims.
Premiseown dataIn humans, the classical pathway is critical for initiating complement activation and associated pathologies after high-dose systemic AAV, while the alternative pathway may serve as an amplification loop.
“Based on these findings, the authors proposed that in humans, the classical pathway is critical for the initiation of complement activation and the occurrence of associated pathologies/toxicities following high-dose systemic delivery of AAV, whereas the alternative pathway may serve as an amplification loop.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [89] source
Not checked in the free run.
May combine two claims.
Premisenone givenClinical symptoms possibly related to complement activation include thrombotic microangiopathy, acute kidney injury involving atypical hemolytic uremic syndrome, thrombocytopenia, elevated transaminases, and endothelial injury.
“Clinical symptoms that may be related to complement activation included thrombotic microangiopathy (TMA), acute kidney injury involving atypical hemolytic uremic syndrome, thrombocytopenia, elevated transaminases, and endothelial injury.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationSmith et al. found that preexisting anti-AAV antibody titers of at least 1:100 efficiently activated complement and increased proinflammatory cytokine secretion and cDC activation, independently of whether vector genomes were empty or full.
“Smith et al. found that higher titers of preexisting anti-AAV antibodies ( ‡1:100) were highly efficient in activation of the complement system and increased secretion of proinflammatory cytokines and activation of cDCs, independent of the vector genome (i.e., empty vs. full particles).86”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [86] source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisereasoningC5b recruits C6 through C9 to form the lytic membrane attack complex on the pathogen surface.
“C5b then recruits other complement proteins, C6-C9, to form the lytic membrane attack complex on the surface of the pathogen.”
Quote in the paperNot a substantial claimMay combine two claims.
Premiseown dataAAV capsid lacks cofactor activity for factor I-mediated conversion of C3b to iC3b and instead binds complement regulatory protein factor H.
“AAV capsid lacked cofactor activity for factor I-mediated degradation of C3b to iC3b and instead also bound complement regulatory protein, factor H.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAll three complement activation pathways converge at the C3 convertase step, which then cleaves C3 into C3a and C3b.
“Despite different means of activation, all three pathways converge at the C3 convertase stage (C4b2a for classical and lectin pathways; C3bBb for the alternative pathway), which subsequently catalyzes C3 to anaphylatoxin C3a and opsonin C3b.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [78] source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationZaiss et al. first reported in 2008 that AAV can interact with complement proteins.
“In 2008, Zaiss et al. first reported that AAV could interact with complement proteins.82”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [82] source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationComplement activity is tightly controlled by soluble and surface-bound regulatory proteins to avoid unnecessary damage to host tissues and organs.
“Because the complement cascade leads to generation of highly potent inflammatory molecules, its activity is tightly regulated by a variety of soluble and surface-bound regulatory proteins, thus preventing unnecessary damage to host tissues and organs.80,81”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
PremisecitationComplement may mediate AAV vector uptake and trigger pro-inflammatory cytokines in primary murine macrophages and a human monocytic cell line.
“The authors found that complement may mediate the uptake of AAV vector and trigger pro-inflammatory cytokines in primary murine macrophages and a human monocytic cell line.82”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [82] source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationC3a and C5a are pro-inflammatory anaphylatoxins that drive chemotaxis and activation of granulocytes, mast cells, and macrophages and open endothelial tight junctions, causing tissue edema.
“Anaphylatoxins (C3a, C5a) generated during complement cascade are generally pro-inflammatory and are responsible for chemotaxis and activation of granulocytes, mast cells, and macrophages to the site of infection 79 through opening of endothelial tight junctions leading to tissue edema.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [79] source
Not checked in the free run.
May combine two claims.
InterpretationreasoningFactor H may restrain alternative pathway complement activation but can enhance B cell activation through C3d generation and engagement of complement receptors on B cells and dendritic cells.
“The latter may limit complement activation through the alternative pathway but enhances B cell activation through generation of C3d, resulting in engagement of complement receptors on B cells and DCs.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationWest et al. observed complement activation when serum had higher preexisting anti-AAV IgG1 antibodies, and this activation was significantly reduced after immunoglobulin depletion.
“Similarly, West et al. also observed activation of the complement system when serum samples had higher levels of preexisting anti-AAV antibodies (IgG1), which were significantly reduced when immunoglobulins were depleted.87”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [87] source
Not checked in the free run.
May combine two claims.
PremisecitationEmerging data from Verdera et al. demonstrate that RNA sensing through MAVS may drive AAV-induced antiviral responses in certain cell types, as MAVS inhibition in human iPSC-derived astrocytes comprehensively reduced interferon-stimulated gene expression.
“Furthermore, emerging data from Verdera et al. demonstrate that RNA sensing through MAVS may drive AAV-induced antiviral responses in certain cell types, as inhibition of MAVS in cultures of human induced pluripotent stem cell-derived astrocytes comprehensively reduced expression of interferon stimulated genes.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [48] source
Not checked in the free run.
May combine two claims.
PremisecitationActivation of the cGAS-STING pathway in these CNS cultures was downstream of p53 upregulation, and STING inhibition with H151 abrogated the pro-inflammatory response.
“Interestingly, authors found that activation of cGAS-STING pathway is downstream of p53 (a tumor suppressor gene) upregulation, and inhibition of STING with an antagonist (H151) abrogated the pro-inflammatory response.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [48] source
Not checked in the free run.
May combine two claims.
PremisecitationPatients treated with rituximab and sirolimus in addition to corticosteroids had no IgM or IgG elevations and lacked activated complement proteins.
“Patients treated with rituximab and sirolimus in addition to corticosteroid had no elevations of IgM or IgG and lacked activated complement proteins.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [89] source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe monoclonal antibody eculizumab, a C5 inhibitor, is currently used in attempts to reduce complement-related immunotoxicities.
“Currently, monoclonal antibody eculizumab (an inhibitor of C5) is being used in an attempt to lessen complementrelated immunotoxicities.13,95”
Quote in the paperNot a substantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
InterpretationreasoningActivation of the cGAS-STING pathway may impact gene editing applications that use AAV vectors to deliver DNA templates, such as ex vivo editing of hematopoietic cells.
“However, activation of this pathway may impact gene editing applications that use AAV vectors to deliver DNA templates, for example, in ex vivo editing of hematopoietic cells.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
InterpretationcitationAn alternative protocol targeting CD20 and the B cell survival factor BAFF may also be useful.
“An alternative protocol targeting CD20 and the B cell survival factor BAFF may also be useful in this regard.94”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [94] source
Not checked in the free run.
May combine two claims.
InterpretationcitationC3 binds directly to AAV capsid, but later work suggests that AAV complement activation is antibody dependent and proceeds through the classical pathway.
“Although C3 was found to bind directly to AAV capsid, further studies suggested that complement activation by AAV is antibody dependent and follows the classical pathway.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationComplement activation after AAV administration was not seen in clinical trials until very high systemic doses were used, which may now be known to trigger life-threatening immunotoxicities.
“Complement activation following AAV administration had not been observed in clinical trials until very high doses were used for systemic delivery, which we now know may trigger life-threatening immunotoxicities.12,13,88,[90][91][92]”
Quote in the paperSubstantial claim0 of 3 sources checkedMay combine two claims.
Premisenone givenIdeS does not affect IgM, which can activate complement and forms within days after AAV infusion.
“However, IdeS does not impact IgM, which is equally capable of activating complement system and readily forms within days after AAV infusion.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S4 (based). May combine two claims.
Interpretationnone givenMost capsids can activate complement in in vitro assays with antibodies, but differences in biodistribution and half-life could possibly matter in vivo.
“While most capsids are able to activate complement in in vitro assays in the presence of antibodies, differences in their biodistribution and half-life in circulation could possibly make a difference in vivo.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenTLR9>MyD88 and IL-1R1>MyD88 signaling is critical for cellular responses to the AAV-encoded transgene product in liver.
“TLR9>MyD88 and IL-1R1>MyD88 mediated signaling is critical for cellular responses to the AAV-encoded transgene product in liver.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenSome internalized AAV capsids are degraded into peptides in endosomes, while those escaping endosomes are degraded in the cytoplasm by proteasomes.
“Some of the internalized AAV capsids are proteolytically degraded into smaller peptides in endosomes, whereas some of those that manage to escape endosomes are degraded in the cytoplasm (by proteasomes).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationFurther complement analysis in primates indicated alternative pathway activation, with elevated Bb and SC5b-9 but not C4a.
“Further analysis of complement proteins indicated alternative pathway activation, as elevated levels of Bb (complement protein associated with alternative pathway) and terminal complement complex SC5b-9 but not C4a were observed.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [96] source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenThe signaling requirements for reactivating memory responses are usually lower than those for primary responses.
“For example, the signaling requirements for reactivation of memory responses are usually lower than for primary responses.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationnone givenAAV vectors carry weaker inflammatory signals than many other viruses or vector systems, but they still elicit innate responses that can substantially affect gene therapy.
“Although AAV vectors contain weaker inflammatory signals than many other viruses or vector systems, they nonetheless elicit innate responses that can have a significant impact on gene therapy.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisereasoningC1 inhibitor is being evaluated in clinical trials to block the classical pathway, while a C3 inhibitor could theoretically block all three complement pathways.
“For instance, C1 inhibitor for blocking of classical pathway is being evaluated in clinical trial, whereas C3 inhibitor theoretically could block the activation of all three complement pathways.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenAntigen-primed and activated T cells leave the liver to survey other organs and can be detected in the circulation.
“Antigen primed and activated T cells egress from the liver to survey other organs and can be detected in the circulation (E).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Premisenone givenAlthough these pathways use different C3 convertases, they follow the same subsequent steps to form the membrane attack complex.
“Although these pathways utilize different C3 convertases, they follow the same subsequent steps leading up to the formation of the membrane attack complex.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S4 (based).
Premisenone givenAAV inverted terminal repeats have inherent transcriptional activity that could produce double-stranded RNA.
“AAV ITRs have inherent transcriptional activity, which could lead to the formation of dsRNA.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenThe classical complement pathway is activated when C1q recognizes AAV-antibody complexes, while binding of hydrolyzed C3b on AAV activates the alternative pathway.
“The classical pathway of complement is activated upon recognition of AAV-antibody complexes by C1q, whereas binding of hydrolyzed C3b on AAV activates the alternative pathway.”
Quote in the paperSubstantial claimMay combine two claims.
Premiseown dataThis transient antiviral environment depends on Kupffer cells and involves infiltration of innate cells including neutrophils and natural killer cells.
“This transient antiviral environment is dependent on KCs and involves infiltration of innate cells, including neutrophils and NK cells (B).”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningThis process facilitates AAV uptake, processing, and presentation of AAV-derived antigens to T cells, leading to an effective humoral and cellular response to AAV.
“This process facilitates AAV uptake, processing, and presentation of AAV-derived antigens to T cells leading to the generation of an effective humoral and cellular response to AAV.”
Quote in the paperSubstantial claimThe quote only partly states this claim.
PremisereasoningCytoplasmic double-stranded RNA sensors such as RIG-I and MDA5 may recognize AAV-derived RNA and drive IFN-I secretion.
“Cytoplasmic dsRNA sensors such as RIG-I and MDA5 may recognize and drive the secretion of IFN-I.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationnone givenA deeper understanding of innate immune mechanisms against AAV has enabled engineering of less immunogenic vectors and better immune suppression protocols.
“A deeper understanding of innate immune response mechanisms against AAV has led to the engineering of vectors with reduced immunogenicity and the development of superior immune suppression protocols.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenTLR2 recognizes AAV capsid, while TLR9 detects unmethylated CpG motifs in the AAV genome.
“TLR2 mediates recognition of AAV capsid, whereas TLR9 recognizes unmethylated CpG motifs in the AAV genome.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationVector-related severe adverse events in primates included severe thrombocytopenia, transaminase elevations, edema, acute endothelial injury, cholestatic effects, and hepatotoxicity, with similarities to clinical studies in DMD, spinal muscular atrophy, and X-linked myotubular myopathy.
“Vector-related severe adverse events included severe thrombocytopenia, transaminase elevations, edema, acute endothelial injury, cholestatic, and hepatotoxicity, among others, and showed some similarities to the ones observed in clinical studies of DMD, spinal muscular atrophy, and Xlinked myotubular myopathy.12,13,17,97,98”
Quote in the paperSubstantial claim0 of 3 sources checkedProbably not a substantial claim: may not pass S4 (based). May combine two claims.
Interpretationnone givenInnate immunity is connected to adaptive responses and to immunotoxicities.
“Innate immunity links to adaptive responses and to immunotoxicities.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningThe early time point of these primate toxicities would be during IgM formation and may therefore not reflect classical pathway activation.
“This time point would be early during IgM formation and may therefore not reflect classical pathway activation.”
Quote in the paperSubstantial claimMay combine two claims.
Premisenone givenIL-1-producing plasmacytoid dendritic cells begin to infiltrate the liver 3 days after AAV administration and peak around day 7.
“IL-1 producing pDCs begin to infiltrate the liver 3 days after AAV administration and peak around day 7.”
Quote in the paperSubstantial claimMay combine two claims.
PremisereasoningThese events lead to neutrophil extracellular trap formation and platelet aggregation.
“These events lead to the formation of neutrophil extracellular traps and platelet aggregation (C).”
Quote in the paperNot a substantial claim
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Viral vector components are detected by pattern-recognition receptors (PRRs) that are present across several retinal cell types and activate proinflammatory signalling cascades.
“For instance, viral vector components are detected by pattern-recognition receptors (PRRs) that are present across several retinal cell types and activate proinflammatory signalling cascades (H ¨ osel et al., 2012; Cao et al., 2024).”
From Gene Therapy-Associated Uveitis (GTAU): Understanding and mitigating the adverse immune response in retinal gene therapy (2025) · cites this paper as Cao et al., 2024
The Figure 1 caption in CONCLUSIONS (page unavailable) says TLR2 recognizes the AAV capsid and TLR9 recognizes motifs in its genome; both signal through MyD88 to promote proinflammatory cytokines. The paper does not establish that these receptors are present across several retinal cell types, so the retinal-specific part of the claim is unsupported. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Cites
The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors
Kawai, T., & Akira, S. (2010) · Nature Immunology · doi:10.1038/ni.1863 · Cited by 9,304 · see citing works
Toll-like receptors: critical proteins linking innate and acquired immunity
Akira, S., Takeda, K., & Kaisho, T. (2001) · Nature Immunology · doi:10.1038/90609 · Cited by 4,777 · see citing works
Toll-like receptors and their crosstalk with other innate receptors in infection and immunity
Kawai, T., & Akira, S. (2011) · Immunity · doi:10.1016/j.immuni.2011.05.006 · Cited by 3,658 · see citing works
Approaching the asymptote? Evolution and revolution in immunology.Preprint
Janeway, C. (1989) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.1989.054.01.003 · Cited by 3,396 · see citing works
Immune Signaling by RIG-I-like Receptors
Loo, Y.-M., & Gale, M. (2011) · Immunity · doi:10.1016/j.immuni.2011.05.003 · Cited by 1,875 · see citing works
Complement System Part I – Molecular Mechanisms of Activation and Regulation
Merle, N. S., Church, S. E., Fremeaux-Bacchi, V., & Roumenina, L. T. (2015) · Frontiers in Immunology · doi:10.3389/fimmu.2015.00262 · Cited by 1,620 · see citing works
Adeno-Associated Virus (AAV) as a Vector for Gene Therapy
Naso, M. F., Tomkowicz, B., Perry, W. L., & Strohl, W. R. (2017) · BioDrugs · doi:10.1007/s40259-017-0234-5 · Cited by 1,362 · see citing works
Complement System Part II: Role in Immunity
Merle, N. S., Noé, R., Halbwachs‐Mecarelli, L., Frémeaux‐Bacchi, V., & Roumenina, L. T. (2015) · Frontiers in Immunology · doi:10.3389/fimmu.2015.00257 · Cited by 1,054 · see citing works
Boutin, S., Monteilhet, V., Veron, P., Leborgne, C., Benveniste, O., Montus, M. F., & Masurier, C. (2010) · Human Gene Therapy · doi:10.1089/hum.2009.182 · Cited by 970 · see citing works
Emerging issues in AAV-mediated in vivo gene therapy
Colella, P., Ronzitti, G., & Mingozzi, F. (2018) · Molecular Therapy - Methods & Clinical Development · doi:10.1016/j.omtm.2017.11.007 · Cited by 881 · see citing works
Worldwide epidemiology of neutralizing antibodies to adeno-associated viruses
Calcedo, R., Vandenberghe, L. H., Gao, G., Lin, J., & Wilson, J. M. (2009) · The Journal of Infectious Diseases · doi:10.1086/595830 · Cited by 808 · see citing works
Immune Responses to Viral Gene Therapy Vectors
Shirley, J. L., de Jong, Y. P., Terhorst, C., & Herzog, R. W. (2020) · Molecular Therapy · doi:10.1016/j.ymthe.2020.01.001 · Cited by 788 · see citing works
Self-citationCurrent clinical applications of in vivo gene therapy with AAVs
Mendell, J. R., Al-Zaidy, S. A., Rodino-Klapac, L. R., Goodspeed, K., Gray, S. J., Kay, C. N., Boye, S. L., Boye, S. E., George, L. A., Salabarria, S., et al. (2021) · Molecular Therapy · doi:10.1016/j.ymthe.2020.12.007 · Cited by 743 · see citing works
Self-citationThe role of the anaphylatoxins in health and disease
Klos, A., Tenner, A. J., Johswich, K.-O., Ager, R. R., Reis, E. S., & Köhl, J. (2009) · Molecular Immunology · doi:10.1016/j.molimm.2009.04.027 · Cited by 730 · see citing works
AAV Vector Immunogenicity in Humans: A Long Journey to Successful Gene Transfer
Costa Verdera, H., Kuranda, K., & Mingozzi, F. (2020) · Molecular Therapy · doi:10.1016/j.ymthe.2019.12.010 · Cited by 641 · see citing works
MDA5/RIG-I and virus recognition
Takeuchi, O., & Akira, S. (2008) · Current Opinion in Immunology · doi:10.1016/j.coi.2008.01.002 · Cited by 567 · see citing works
Nathwani, A. C., Gray, J. T., Ng, C. Y., Zhou, J., Spence, Y., Waddington, S. N., Tuddenham, E. G. D., Kemball‐Cook, G., McIntosh, J., Boon‐Spijker, M., et al. (2005) · Blood · doi:10.1182/blood-2005-10-4035 · Cited by 421 · see citing works
Differential activation of innate immune responses by adenovirus and adeno-associated virus vectors
Zaiss, A.-K., Liu, Q., Bowen, G. P., Wong, N. C. W., Bartlett, J. S., & Muruve, D. A. (2002) · Journal of Virology · doi:10.1128/jvi.76.9.4580-4590.2002 · Cited by 394 · see citing works
Endosomal processing limits gene transfer to polarized airway epithelia by adeno-associated virus
Duan, D., Yue, Y., Yan, Z., Yang, J., & Engelhardt, J. F. (2000) · Journal of Clinical Investigation · doi:10.1172/jci8317 · Cited by 391 · see citing works
Self-citationComplement activation and inhibition: a delicate balance
Sjöberg, A. P., Trouw, L. A., & Blom, A. M. (2009) · Trends in Immunology · doi:10.1016/j.it.2008.11.003 · Cited by 364 · see citing works
AAV vectors: The Rubik’s cube of human gene therapy
Pupo, A., Fernández, A., Low, S. H., François, A., Suárez-Amarán, L., & Samulski, R. J. (2022) · Molecular Therapy · doi:10.1016/j.ymthe.2022.09.015 · Cited by 361 · see citing works
Adeno-Associated Virus Antibody Profiles in Newborns, Children, and Adolescents
Calcedo, R., Morizono, H., Wang, L., McCarter, R., He, J., Jones, D., Batshaw, M. L., & Wilson, J. M. (2011) · Clinical and Vaccine Immunology · doi:10.1128/cvi.05107-11 · Cited by 345 · see citing works
Zhu, J., Huang, X., & Yang, Y. (2009) · Journal of Clinical Investigation · doi:10.1172/jci37607 · Cited by 330 · see citing works
Various AAV Serotypes and Their Applications in Gene Therapy: An Overview
Issa, S. S., Shaimardanova, A. A., Solovyeva, V. V., & Rizvanov, A. A. (2023) · Cells · doi:10.3390/cells12050785 · Cited by 319 · see citing works
Death after High-Dose rAAV9 Gene Therapy in a Patient with Duchenne’s Muscular Dystrophy
Lek, A., Wong, B., Keeler, A., Blackwood, M., Ma, K., Huang, S., Sylvia, K., Batista, A. R., Artinian, R., Kokoski, D., et al. (2023) · New England Journal of Medicine · doi:10.1056/nejmoa2307798 · Cited by 319 · see citing works
Structural Basis of IL-1 Family Cytokine Signaling
Fields, J. K., Günther, S., & Sundberg, E. J. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.01412 · Cited by 302 · see citing works
CpG-depleted adeno-associated virus vectors evade immune detection
Faust, S. M., Bell, P., Cutler, B. J., Ashley, S. N., Zhu, Y., Rabinowitz, J. E., & Wilson, J. M. (2013) · Journal of Clinical Investigation · doi:10.1172/jci68205 · Cited by 254 · see citing works
Martino, A. T., Suzuki, M., Markusic, D. M., Zolotukhin, I., Ryals, R. C., Moghimi, B., Ertl, H. C. J., Muruve, D. A., Lee, B., & Herzog, R. W. (2011) · Blood · doi:10.1182/blood-2010-10-314518 · Cited by 246 · see citing works
Self-citationLethal immunotoxicity in high-dose systemic AAV therapy
Duan, D. (2023) · Molecular Therapy · doi:10.1016/j.ymthe.2023.10.015 · Cited by 240 · see citing works
Self-citationBreous, E., Somanathan, S., Vandenberghe, L. H., & Wilson, J. M. (2009) · Hepatology · doi:10.1002/hep.23043 · Cited by 237 · see citing works
Zhong, L., Li, B., Jayandharan, G., Mah, C. S., Govindasamy, L., Agbandje-McKenna, M., Herzog, R. W., Weigel-Van Aken, K. A., Hobbs, J. A., Zolotukhin, S., et al. (2008) · Virology · doi:10.1016/j.virol.2008.08.027 · Cited by 232 · see citing works
Self-citationYan, Z., Zak, R., Luxton, G. W. G., Ritchie, T. C., Bantel-Schaal, U., & Engelhardt, J. F. (2002) · Journal of Virology · doi:10.1128/jvi.76.5.2043-2053.2002 · Cited by 222 · see citing works
Hösel, M., Broxtermann, M., Janicki, H., Esser, K., Arzberger, S., Hartmann, P., Gillen, S., Kleeff, J., Stabenow, D., Odenthal, M., et al. (2012) · Hepatology · doi:10.1002/hep.24625 · Cited by 219 · see citing works
Engineering adeno-associated viral vectors to evade innate immune and inflammatory responses
Chan, Y. K., Wang, S. K., Chu, C. J., Copland, D. A., Letizia, A. J., Costa Verdera, H., Chiang, J. J., Sethi, M., Wang, M. K., Neidermyer, W. J., et al. (2021) · Science Translational Medicine · doi:10.1126/scitranslmed.abd3438 · Cited by 215 · cited 5× · see citing works
“23,33 Depending on vector design and dose, a spike in systemic IL-6 may be observed, which is TLR9 dependent in the mouse and has also occurred in a patient that received AAV liver gene transfer.”
InfluentialChand, D. H., Zaidman, C., Arya, K., Millner, R., Farrar, M. A., Mackie, F. E., Goedeker, N. L., Dharnidharka, V. R., Dandamudi, R., & Reyna, S. P. (2021) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2020.11.054 · Cited by 210 · see citing works
Konkle, B. A., Walsh, C. E., Escobar, M. A., Josephson, N. C., Young, G., von Drygalski, A., McPhee, S. W. J., Samulski, R. J., Bilic, I., de la Rosa, M., et al. (2021) · Blood · doi:10.1182/blood.2019004625 · Cited by 189 · see citing works
Delandistrogene Moxeparvovec: First Approval
Hoy, S. M. (2023) · Drugs · doi:10.1007/s40265-023-01929-x · Cited by 178 · see citing works
Complement Is an Essential Component of the Immune Response to Adeno-Associated Virus Vectors
Zaiss, A. K., Cotter, M. J., White, L. R., Clark, S. A., Wong, N. C. W., Holers, V. M., Bartlett, J. S., & Muruve, D. A. (2008) · Journal of Virology · doi:10.1128/jvi.01990-07 · Cited by 177 · see citing works
Gene Expression from Adeno-associated Virus Vectors in Airway Epithelial Cells
Flotte, T. R., Solow, R., Owens, R. A., Afione, S., Zeitlin, P. L., & Carter, B. J. (1992) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/ajrcmb/7.3.349 · Cited by 167 · see citing works
Fatal thrombotic microangiopathy case following adeno-associated viral <i>SMN</i> gene therapy
Guillou, J., de Pellegars, A., Porcheret, F., Frémeaux-Bacchi, V., Allain-Launay, E., Debord, C., Denis, M., Péréon, Y., Barnérias, C., Desguerre, I., et al. (2022) · Blood Advances · doi:10.1182/bloodadvances.2021006419 · Cited by 166 · see citing works
Salabarria, S. M., Corti, M., Coleman, K. E., Wichman, M. B., Berthy, J. A., D’Souza, P., Tifft, C. J., Herzog, R. W., Elder, M. E., Shoemaker, L. R., et al. (2024) · Journal of Clinical Investigation · doi:10.1172/jci173510 · Cited by 159 · see citing works
Self-citationAddressing high dose AAV toxicity – ‘one and done’ or ‘slower and lower’
Kishimoto, T. K., & Samulski, R. J. (2022) · Expert Opinion on Biological Therapy · doi:10.1080/14712598.2022.2060737 · Cited by 152 · see citing works
The state of cell and gene therapy in 2023
Chancellor, D., Barrett, D., Nguyen-Jatkoe, L., Millington, S., & Eckhardt, F. (2023) · Molecular Therapy · doi:10.1016/j.ymthe.2023.11.001 · Cited by 149 · see citing works
AAV8 Can Induce Innate and Adaptive Immune Response in the Primate Eye
Reichel, F. F., Dauletbekov, D. L., Klein, R., Peters, T., Ochakovski, G. A., Seitz, I. P., Wilhelm, B., Ueffing, M., Biel, M., Wissinger, B., et al. (2017) · Molecular Therapy · doi:10.1016/j.ymthe.2017.08.018 · Cited by 145 · see citing works
Nathwani, A. C. (2019) · Hematology · doi:10.1182/hematology.2019000007 · Cited by 140 · see citing works
Rogers, G. L., Shirley, J. L., Zolotukhin, I., Kumar, S. R. P., Sherman, A., Perrin, G. Q., Hoffman, B. E., Srivastava, A., Basner-Tschakarjan, E., Wallet, M. A., et al. (2017) · Blood · doi:10.1182/blood-2016-11-751040 · Cited by 131 · see citing works
Self-citationRegulation of regulators: Role of the complement factor H-related proteins
Cserhalmi, M., Papp, A., Brandus, B., Uzonyi, B., & Józsi, M. (2019) · Seminars in Immunology · doi:10.1016/j.smim.2019.101341 · Cited by 131 · cited 1× · see citing works
“78 Despite different means of activation, all three pathways converge at the C3 convertase stage (C4b2a for classical and lectin pathways; C3bBb for the alternative pathway), which subsequently catalyzes C3 to anaphylatoxin C3a and opsonin C3b.”
Shao, W., Earley, L. F., Chai, Z., Chen, X., Sun, J., He, T., Deng, M., Hirsch, M. L., Ting, J., Samulski, R. J., et al. (2018) · JCI Insight · doi:10.1172/jci.insight.120474 · Cited by 119 · see citing works
Basit, A., Cho, M.-G., Kim, E.-Y., Kwon, D., Kang, S., & Lee, J. (2020) · Experimental & Molecular Medicine · doi:10.1038/s12276-020-0416-y · Cited by 119 · see citing works
Interpretation of Serological Complement Biomarkers in Disease
Ekdahl, K. N., Persson, B., Mohlin, C., Sandholm, K., Skattum, L., & Nilsson, B. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.02237 · Cited by 117 · see citing works
Effective gene therapy for haemophilic mice with pathogenic factor IX antibodies
Markusic, D. M., Hoffman, B. E., Perrin, G. Q., Nayak, S., Wang, X., LoDuca, P. A., High, K. A., & Herzog, R. W. (2013) · EMBO Molecular Medicine · doi:10.1002/emmm.201302859 · Cited by 116 · see citing works
Self-citationEarley, L. F., Conatser, L. M., Lue, V. M., Dobbins, A. L., Li, C., Hirsch, M. L., & Samulski, R. J. (2020) · Human Gene Therapy · doi:10.1089/hum.2019.274 · Cited by 116 · see citing works
Intracellular trafficking of adeno-associated virus (AAV) vectors: challenges and future directions
Riyad, J. M., & Weber, T. (2021) · Gene Therapy · doi:10.1038/s41434-021-00243-z · Cited by 116 · see citing works
Dobrzynski, E., Fitzgerald, J. C., Cao, O., Mingozzi, F., Wang, L., & Herzog, R. W. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508685103 · Cited by 105 · see citing works
Self-citationExposure to wild-type AAV drives distinct capsid immunity profiles in humans
Kuranda, K., Jean-Alphonse, P., Leborgne, C., Hardet, R., Collaud, F., Marmier, S., Costa Verdera, H., Ronzitti, G., Veron, P., & Mingozzi, F. (2018) · Journal of Clinical Investigation · doi:10.1172/jci122372 · Cited by 104 · see citing works
Shieh, P. B., Bönnemann, C. G., Müller-Felber, W., Blaschek, A., Dowling, J. J., Kuntz, N. L., & Seferian, A. M. (2020) · Human Gene Therapy · doi:10.1089/hum.2020.217 · Cited by 91 · see citing works
Self‐nonself discrimination by the complement system
Meri, S. (2016) · FEBS Letters · doi:10.1002/1873-3468.12284 · Cited by 87 · see citing works
Smith, C. J., Ross, N., Kamal, A., Kim, K. Y., Kropf, E., Deschatelets, P., Francois, C., Quinn, W. J., Singh, I., Majowicz, A., et al. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.999021 · Cited by 86 · see citing works
Rogers, G. L., Suzuki, M., Zolotukhin, I., Markusic, D. M., Morel, L. M., Lee, B., Ertl, H. C. J., & Herzog, R. W. (2015) · Journal of Innate Immunity · doi:10.1159/000369273 · Cited by 85 · see citing works
Self-citationKumar, S. R. P., Hoffman, B. E., Terhorst, C., de Jong, Y. P., & Herzog, R. W. (2017) · Molecular Therapy · doi:10.1016/j.ymthe.2017.02.014 · Cited by 83 · see citing works
Self-citationHordeaux, J., Lamontagne, R. J., Song, C., Buchlis, G., Dyer, C., Buza, E. L., Ramezani, A., Wielechowski, E., Greig, J. A., Chichester, J. A., et al. (2024) · Molecular Therapy · doi:10.1016/j.ymthe.2024.02.002 · Cited by 81 · see citing works
Effect of CpG Depletion of Vector Genome on CD8+ T Cell Responses in AAV Gene Therapy
Bertolini, T. B., Shirley, J. L., Zolotukhin, I., Li, X., Kaisho, T., Xiao, W., Kumar, S. R. P., & Herzog, R. W. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.672449 · Cited by 80 · cited 2× · see citing works
“24,33,57 ,58,59 Interestingly, a hemophilia B patient, who — unlike other study participants — showed sustained therapeutic factor IX expression after having received a CpG-rich vector construct, had a mutation in one allele of IL-6R likely resulting in a lack of functionality of this receptor…”
Self-citationCodon Modification and PAMPs in Clinical AAV Vectors: The Tortoise or the Hare?
Wright, J. F. (2020) · Molecular Therapy · doi:10.1016/j.ymthe.2020.01.026 · Cited by 80 · see citing works
Shirley, J. L., Keeler, G. D., Sherman, A., Zolotukhin, I., Markusic, D. M., Hoffman, B. E., Morel, L. M., Wallet, M. A., Terhorst, C., & Herzog, R. W. (2020) · Molecular Therapy · doi:10.1016/j.ymthe.2019.11.011 · Cited by 79 · see citing works
Self-citationHoffman, B. E., Martino, A. T., Sack, B. K., Cao, O., Liao, G., Terhorst, C., & Herzog, R. W. (2011) · Molecular Therapy · doi:10.1038/mt.2011.33 · Cited by 72 · see citing works
Self-citationWu, T., Töpfer, K., Lin, S.-W., Li, H., Bian, A., Zhou, X. Y., High, K. A., & Ertl, H. C. (2012) · Molecular Therapy · doi:10.1038/mt.2011.280 · Cited by 66 · see citing works
The IL-1 cytokine family as custodians of barrier immunity
Matarazzo, L., Hernandez-Santana, Y., Walsh, P. T., & Fallon, P. G. (2022) · Cytokine · doi:10.1016/j.cyto.2022.155890 · Cited by 66 · see citing works
Quantification of CpG motifs in rAAV genomes: Avoiding the toll
Wright, J. F. (2020) · Molecular Therapy · doi:10.1016/j.ymthe.2020.07.006 · Cited by 65 · see citing works
MyD88 Signaling in B Cells Regulates the Production of Th1-dependent Antibodies to AAV
Sudres, M., Ciré, S., Vasseur, V., Brault, L., Da Rocha, S., Boisgérault, F., Le Bec, C., Gross, D. A., Blouin, V., Ryffel, B., et al. (2012) · Molecular Therapy · doi:10.1038/mt.2012.101 · Cited by 59 · see citing works
Fourth Boy Dies in Clinical Trial of Astellas' AT132
Philippidis, A. (2021) · Human Gene Therapy · doi:10.1089/hum.2021.29182.bfs · Cited by 59 · see citing works
Chandler, L. C., Barnard, A. R., Caddy, S. L., Patrício, M. I., McClements, M. E., Fu, H., Rada, C., MacLaren, R. E., & Xue, K. (2019) · Molecular Therapy - Methods & Clinical Development · doi:10.1016/j.omtm.2019.05.012 · Cited by 50 · see citing works
Suzuki, M., Bertin, T., Rogers, G. L., Cela, R. G., Zolotukhin, I., Palmer, D. J., Ng, P., Herzog, R. W., & Lee, B. (2013) · Molecular Therapy · doi:10.1038/mt.2012.277 · Cited by 49 · see citing works
Self-citationFu, H., Meadows, A. S., Pineda, R. J., Kunkler, K. L., Truxal, K. V., McBride, K. L., Flanigan, K. M., & McCarty, D. M. (2017) · Human Gene Therapy Clinical Development · doi:10.1089/humc.2017.109 · Cited by 44 · see citing works
Herzog, R. W., Cooper, M., Perrin, G. Q., Biswas, M., Martino, A. T., Morel, L., Terhorst, C., & Hoffman, B. E. (2019) · Cellular Immunology · doi:10.1016/j.cellimm.2017.07.012 · Cited by 39 · see citing works
Self-citationComplement Activation by Adeno-Associated Virus-Neutralizing Antibody Complexes
West, C., Federspiel, J. D., Rogers, K., Khatri, A., Rao-Dayton, S., Ocana, M. F., Lim, S., D'Antona, A. M., Casinghino, S., & Somanathan, S. (2023) · Human Gene Therapy · doi:10.1089/hum.2023.018 · Cited by 39 · see citing works
Butterfield, J. S. S., Yamada, K., Bertolini, T. B., Syed, F., Kumar, S. R. P., Li, X., Arisa, S., Piñeros, A. R., Tapia, A., Rogers, C. A., et al. (2022) · Molecular Therapy · doi:10.1016/j.ymthe.2022.07.005 · Cited by 36 · see citing works
Self-citationButterfield, J. S. S., Biswas, M., Shirley, J. L., Kumar, S. R. P., Sherman, A., Terhorst, C., Ling, C., & Herzog, R. W. (2019) · Human Gene Therapy Methods · doi:10.1089/hgtb.2019.013 · Cited by 35 · see citing works
Self-citationAAV vectors trigger DNA damage responses and STING-dependent inflammation in human CNS cells
Costa-Verdera, H., Meneghini, V., Fitzpatrick, Z., Alezz, M. A., Fabyanic, E., Huang, X., Dzhashiashvili, Y., Ahiya, A., Mangiameli, E., Valeri, E., et al. (2024) · doi:10.21203/rs.3.rs-4171795/v1 · Cited by 32 · see citing works
Costa-Verdera, H., Meneghini, V., Fitzpatrick, Z., Abou Alezz, M., Fabyanic, E., Huang, X., Dzhashiashvili, Y., Ahiya, A., Mangiameli, E., Valeri, E., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-58778-3 · Cited by 32 · see citing works
Yazaki, K., Sakuma, S., Hikita, N., Fujimaru, R., & Hamazaki, T. (2022) · Neurology · doi:10.1212/wnl.0000000000200676 · Cited by 31 · see citing works
TLR9-independent CD8+ T cell responses in hepatic AAV gene transfer through IL-1R1-MyD88 signaling
Kumar, S. R. P., Biswas, M., Cao, D., Arisa, S., Muñoz-Melero, M., Lam, A. K., Piñeros, A. R., Kapur, R., Kaisho, T., Kaufman, R. J., et al. (2024) · Molecular Therapy · doi:10.1016/j.ymthe.2023.11.029 · Cited by 31 · see citing works
Self-citationDudek, A. M., & Porteus, M. H. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.660302 · Cited by 29 · see citing works
Immune Responses to Muscle-Directed Adeno-Associated Viral Gene Transfer in Clinical Studies
Kumar, S. R. P., Duan, D., & Herzog, R. W. (2023) · Human Gene Therapy · doi:10.1089/hum.2023.056 · Cited by 28 · see citing works
Self-citationB cell focused transient immune suppression protocol for efficient AAV readministration to the liver
Rana, J., Herzog, R. W., Muñoz-Melero, M., Yamada, K., Kumar, S. R. P., Lam, A. K., Markusic, D. M., Duan, D., Terhorst, C., Byrne, B. J., et al. (2024) · Molecular Therapy - Methods & Clinical Development · doi:10.1016/j.omtm.2024.101216 · Cited by 26 · see citing works
Self-citationCarestia, A., Kim, S.-J., Horling, F., Rottensteiner, H., Lubich, C., Reipert, B. M., Crowe, B. A., & Jenne, C. N. (2021) · Molecular Therapy - Methods & Clinical Development · doi:10.1016/j.omtm.2020.10.023 · Cited by 24 · see citing works
Suriano, C. M., Kumar, N., Verpeut, J. L., Ma, J., Jung, C., Dunn, C. E., Carvajal, B. V., Nguyen, A. V., & Boulanger, L. M. (2024) · Molecular Therapy · doi:10.1016/j.ymthe.2024.03.036 · Cited by 21 · see citing works
Kaczmarek, R., Piñeros, A. R., Patterson, P. E., Bertolini, T. B., Perrin, G. Q., Sherman, A., Born, J., Arisa, S., Arvin, M. C., Kamocka, M. M., et al. (2023) · Blood · doi:10.1182/blood.2022018937 · Cited by 19 · see citing works
Self-citationSatellite Subgenomic Particles Are Key Regulators of Adeno-Associated Virus Life Cycle
Zhang, J., Yu, X., Guo, P., Firrman, J., Pouchnik, D., Diao, Y., Samulski, R. J., & Xiao, W. (2021) · Viruses · doi:10.3390/v13061185 · Cited by 15 · see citing works
Death after High-Dose rAAV9 Gene Therapy in a Patient with Duchenne’s Muscular Dystrophy
(2023) · New England Journal of Medicine · doi:10.1056/nejmc2312288 · Cited by 12 · see citing works
Glenn, J. D., Negash, H., Henry, W., Qian, R., Liu, Y., Danos, O., Bruder, J. T., & Karumuthil-Melethil, S. (2024) · Cellular Immunology · doi:10.1016/j.cellimm.2024.104823 · Cited by 6 · see citing works
Flanigan, K. M., Smith, N. J. C., Couce, M. L., et al. (2022) · Neurology · doi:10.1212/wnl.98.18_supplement.213 · Cited by 5 · see citing works
Flagged first, then by citations
Research works printed but not linked: 3
- Li N, , Herzog RW. AAV vector dose dependent redundant and non-redundant roles of TLR9 and IL-1R signaling in CD8+ T cell activation upon muscle gene transfer. Mol Ther, 2021; 29:35.
- Kumar SRP, , Ln, , Herzog RW. Effectiveness of engineering AAV vector genomes to evade TLR9 signaling for prevention of CD8+ T Cell responses in muscle gene transfer is vector dose Dependent. Mol Ther, 2023; 31:4S1(73).
- Biosciences S. Solid Biosciences. Solid Biosciences Provides SGT-001 Program Update. 2019. Available from: https://www.solidbio.com/about/media/press-releases/solid-biosciences-provides-sgt-001-program-update [Last Accessed;02 15].
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Sorted by citations
Purdy, R., John, M., Bray, A., Clare, A. J., Copland, D. A., Chan, Y. K., Henderson, R. H., Nerinckx, F., Leroy, B. P., Yang, P., et al. (2025) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2025.101354 · Cited by 24 · see citing works
- Authors
- Cao, D., Byrne, B. J., de Jong, Y. P., Terhorst, C., Duan, D., Herzog, R. W., & Kumar, S. R. P.
- Affiliations
- Indiana University Indianapolis (US)
- University of Florida Health (US)
- Division of Gastroenterology & Hepatology, Weill Cornell Medicine, New York, New York, USA
- Beth Israel Deaconess Medical Center (US)
- University of Missouri (US)
- Corresponding author
- Herzog, Roland W.
- Kumar, Sandeep R.P.
- Venue
- Human Gene Therapy
- Publisher
- SAGE Publications
- Published
- 2024-07
- Volume
- 35
- Issue
- 13-14
- Pages
- 451-463
- ISSN
- 1043-0342 (ISSN-L)
- 1557-7422
- PMC
- PMC11310564
- OpenAlex
- W4399783060
- Semantic Scholar
- dff3bdbdef968167fe513700bc38c71327efabf3
- Cited by
- 50
- References
- 91
- Citations by year
- 2026: 28 · 2025: 15 · 2024: 7
- FWCI
- 13.27
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Human Gene Therapy (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- IUScholarWorks (Indiana University) (submittedVersion)
- Funders
- Riley Children's Foundation
- National Institutes of Health
- National Heart, Lung, and Blood Institute (R01HL139708, P01HL160472, R01HL131093)
- National Institute of Allergy and Infectious Diseases (R01AI051390, R01AI177600)
- National Institute of Neurological Disorders and Stroke (R01NS090634, U01NS116752, R01NS131416)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Keywords
- adeno-associated virus vectors, innate immune recognition, TLR9, plasmacytoid dendritic cells, type I interferon, MyD88 signaling, CD8+ T cell activation, complement activation, TLR2, antigen-presenting cells, immunotoxicity, gene therapy
- MeSH terms
- Dependovirus, Animals, Dendritic Cells, Genetic Vectors, Humans, Immunity, Innate, Genetic Therapy, Signal Transduction, Toll-Like Receptor 9
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