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Atg17 Functions in Cooperation with Atg1 and Atg13 in Yeast Autophagy
Abstract
In eukaryotic cells, nutrient starvation induces the bulk degradation of cellular materials; this process is called autophagy. In the yeast Saccharomyces cerevisiae, most of the ATG (autophagy) genes are involved in not only the process of degradative autophagy, but also a biosynthetic process, the cytoplasm to vacuole (Cvt) pathway. In contrast, the ATG17 gene is required specifically in autophagy. To better understand the function of Atg17, we have performed a biochemical characterization of the Atg17 protein. We found that the atg17Δ mutant under starvation condition was largely impaired in autophagosome formation and only rarely contained small autophagosomes, whose size was less than one-half of normal autophagosomes in diameter. Two-hybrid analyses and coimmunoprecipitation experiments demonstrated that Atg17 physically associates with Atg1-Atg13 complex, and this binding was enhanced under starvation conditions. Atg17-Atg1 binding was not detected in atg13Δ mutant cells, suggesting that Atg17 interacts with Atg1 through Atg13. A point mutant of Atg17, Atg17 C24R, showed reduced affinity for Atg13, resulting in impaired Atg1 kinase activity and significant defects in autophagy. Taken together, these results indicate that Atg17-Atg13 complex formation plays an important role in normal autophagosome formation via binding to and activating the Atg1 kinase.
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The autophosphorylation of Atg1 at Thr226 is required for its kinase activity and for autophagy induction.
“the autophosphorylation of Atg1 at Thr226 is required for its kinase activity and for autophagy induction”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [743]
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Cites
Formation Process of Autophagosome Is Traced with Apg8/Aut7p in Yeast
Kirisako, T., Baba, M., Ishihara, N., Miyazawa, K., Ohsumi, M., Yoshimori, T., Noda, T., & Ohsumi, Y. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.147.2.435 · Cited by 881 · cited 1×
“However, when atg17 pep4 double mutant cells were incubated under nitrogen starvation conditions for 4 h, there was no substantial accumulation of autophagic bodies inside the vacuole, like other autophagy defective mutants, such as atg8 (unpublished data; Kirisako et al., 1999).”
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Research works printed but not linked: 29
- 10.1091/mbc.e02-07-0413 · DOI
- Baba, M., Osumi, M., Scott, S. V., Klionsky, D. J., and Ohsumi, Y. (1997). Two distinct pathways for targeting proteins from the cytoplasm to the vacuole/lysosome.J. Cell Biol.139, 1687-1695. · DOI · Paper page
- Baba, M., Takeshige, K., Baba, N., and Ohsumi, Y. (1994). Ultrastructural analysis of the autophagic process in yeast: detection of autophagosomes and their characterization.J. Cell Biol.124, 903-913. · DOI
- Bishop, A. C., Kung, C.y., Shah, K., Witucki, L., Shokat, K. M., and Liu, Y. (1999). Generation of monospecific nanomolar tyrosine kinase inhibitors via a chemical genetic approach.J. Am. Chem. Soc.121, 627-631. · DOI
- Dieffenbach, C. W., and Dveksler, G. S. (1995).PCR Primer: A Laboratory Manual, Plainview, NY: Cold Spring Harbor Laboratory Press.
- Drees, B. L.et al.(2001). A protein interaction map for cell polarity development.J. Cell Biol.154, 549-571. · DOI
- Funakoshi, T., Matsuura, A., Noda, T., and Ohsumi, Y. (1997). Analyses ofAPG13gene involved in autophagy in yeast,Saccharomyces cerevisiae.Gene192, 207-213. · DOI
- Giaever, G.et al.(2002). Functional profiling of theSaccharomyces cerevisiaegenome.Nature418, 387-391. · DOI · Paper page
- Hanafeld, U., Rees, C. W., White, A.J.P., and Williams, D. J. (1996). One-pot synthesis of tetrasubstituted pyrazoles-proofs of regiochemistry.J. Chem. Soc. Perkin1, 1545-1552. · DOI
- Hutchins, M. U., Veenhuis, M., and Klionsky, D. J. (1999). Peroxisome degradation bySaccharomyces cerevisiaeis dependent on machinery of macroautophagy and the Cvt pathway.J. Cell Sci.112, 4079-4087. · DOI
- Irie, K., Takase, M., Lee, K. S., Levin, D. E., Araki, H., Matsumoto, K., and Oshima, Y. (1993).MKK1andMKK2, which encodeSaccharomyces cerevisiaemitogen-activated protein Kinase-kinase homologs, function in the pathway mediated by protein kinase C.Mol. Cell Biol.13, 3076-3083. · DOI
- James, P., Halladay, J., and Craig, E. A. (1996). Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast.Genetics144, 1425-1436. · DOI
- Kaiser, C., Michaelis, S., and Mitchell, A. (1994).Methods in Yeast Genetics, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
- Kamada, Y., Funakoshi, T., Shintani, T., Nagano, K., Ohsumi, M., and Ohsumi, Y. (2000). Tor-mediated induction of autophagy via an Apg1 protein kinase complex.J. Cell Biol.1507-1513. · DOI · Paper page
- Klionsky, D. J., and Ohsumi, Y. (1999). Vacuolar import of proteins and organelles from the cytoplasm.Annu. Rev. Cell Dev. Biol.15, 1-32. · DOI
- Matsuura, A., Tsukada, M., Wada, Y., and Ohsumi, Y. (1997). Apg1p, a novel protein kinase required for the autophagic process inSaccharomyces cerevisiae.Gene192, 245-250. · DOI
- Nice, D. C., Sato, T. K., Stromhaug, P. E., Emr, S. D., and Klionsky, D. J. (2002). Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy.J. Biol. Chem.277, 30198-30207. · DOI
- Noda, T., Kim, J., Huang, W. P., Baba, M., Tokunaga, C., Ohsumi, Y., and Klionsky, D. J. (2000). Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the cvt and autophagy pathways.J. Cell Biol.148, 465-479. · DOI
- Noda, T., Matsuura, A., Wada, Y., and Ohsumi, Y. (1995). Novel system for monitoring autophagy in the yeastSaccharomyces cerevisiae.Biochem. Biophys. Res. Commun.210, 126-132. · DOI
- Noda, T., and Ohsumi, Y. (1998). Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast.J. Biol. Chem.273, 3963-3966. · DOI
- Robinson, J. S., Klionsky, D. J., Banta, L. M., and Emr, S. D. (1988). Protein sorting inSaccharomyces cerevisiae: isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases.Mol. Cell. Biol.8, 4936-4948. · DOI
- Scott, S. V., Hefner-Gravink, A., Morano, K.A., Noda, T., Ohsumi, Y., and Klionsky, D. J. (1996). Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole.Proc. Natl. Acad. Sci. USA93, 12304-12308. · DOI
- Straub, M., Bredschneider, M., and Thumm, M. (1997). AUT3, a serine/threonine kinase gene, is essential for autophagocytosis inSaccharomyces cerevisiae.J. Bacteriol.179, 3875-3883. · DOI
- Suzuki, K., Kirisako, T., Kamada, Y., Mizushima, N., Noda, T., and Ohsumi, Y. (2001). The pre-autophagosomal structure organized by concerted functions ofAPGgenes is essential for autophagosome formation.EMBO J.20, 5971-5981. · DOI
- Suzuki, K., Noda, T., and Ohsumi, Y. (2004). Interrelationships among Atg proteins during autophagy inSaccharomyces cerevisiae.Yeast21, 1057-1065. · DOI
- Takeshige, K., Baba, M., Tsuboi, S., Noda, T., and Ohsumi, Y. (1992). Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction.J. Cell Biol.119, 301-311. · DOI
- Thumm, M., Egner, R., Koch, B., Schlumpberger, M., Straub, M., Veenhuis, M., and Wolf, D. H. (1994). Isolation of autophagocytosis mutants ofSaccharomyces cerevisiae.FEBS Lett.349, 275-280. · DOI
- Tsukada, M., and Ohsumi, Y. (1993). Isolation and characterization of autophagy-defective mutants ofSaccharomyces cerevisiae.FEBS Lett.333, 169-174. · DOI
- Uetz, P.et al.(2000). A comprehensive analysis of protein-protein interactions inSaccharomyces cerevisiae.Nature403, 623-627. · DOI · Paper page
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Self-citationRegulation mechanisms and signaling pathways of autophagy
He, C., & Klionsky, D. J. (2009) · Annual Review of Genetics · doi:10.1146/annurev-genet-102808-114910 · Cited by 3,609
The Role of Atg Proteins in Autophagosome Formation
Mizushima, N., Yoshimori, T., & Ohsumi, Y. (2011) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-092910-154005 · Cited by 2,978
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Self-citationJung, C. H., Ro, S.-H., Cao, J., Otto, N. M., & Kim, D.-H. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.01.017 · Cited by 2,090
The machinery of macroautophagy
Feng, Y., He, D., Yao, Z., & Klionsky, D. J. (2014) · Cell Research · doi:10.1038/cr.2013.168 · Cited by 2,083
Nutrient-dependent mTORC1 Association with the ULK1–Atg13–FIP200 Complex Required for Autophagy
Hosokawa, N., Hara, T., Kaizuka, T., Kishi, C., Takamura, A., Miura, Y., Iemura, S.-I., Natsume, T., Takehana, K., Yamada, N., et al. (2009) · Molecular Biology of the Cell · doi:10.1091/mbc.e08-12-1248 · Cited by 2,076
Network organization of the human autophagy system
Behrends, C., Sowa, M. E., Gygi, S. P., & Harper, J. W. (2010) · Nature · doi:10.1038/nature09204 · Cited by 1,554
Role of AMPK-mTOR-Ulk1/2 in the regulation of autophagy: cross talk, shortcuts, and feedbacks
Alers, S., Löffler, A. S., Wesselborg, S., & Stork, B. (2012) · Molecular and Cellular Biology · doi:10.1128/mcb.06159-11 · Cited by 1,483
The role of the Atg1/ULK1 complex in autophagy regulation
Mizushima, N. (2010) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.12.004 · Cited by 1,062
Autophagy and apoptosis dysfunction in neurodegenerative disorders
Ghavami, S., Shojaei, S., Yeganeh, B., Ande, S. R., Jangamreddy, J. R., Mehrpour, M., Christoffersson, J., Chaabane, W., Moghadam, A. R., Kashani, H. H., et al. (2014) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2013.10.004 · Cited by 1,039
The Association of AMPK with ULK1 Regulates Autophagy
Lee, J. W., Park, S., Takahashi, Y., & Wang, H.-G. (2010) · PLoS ONE · doi:10.1371/journal.pone.0015394 · Cited by 482
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Burman, C., & Ktistakis, N. T. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.01.011 · Cited by 234
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Chan, E. Y. (2009) · Science Signaling · doi:10.1126/scisignal.284pe51 · Cited by 214
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Metadata
- Authors
- Kabeya, Y., Kamada, Y., Baba, M., Takikawa, H., Sasaki, M., & Ohsumi, Y.
- Venue
- Molecular Biology of the Cell
- Published
- 2005-05
- Volume
- 16
- Issue
- 5
- Pages
- 2544-2553
- ISSN
- 1059-1524
- 1939-4586
- Cited by
- 304
- References
- 1
- Language
- en
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