Fast and accurate short read alignment with Burrows-Wheeler transform

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11. Assessment of global health risk of antibiotic resistance genes
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12. The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome
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13. Commensal Microbiota Promote Lung Cancer Development via γδ T Cells
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17. A framework for the interpretation of de novo mutation in human disease
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18. Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction
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19. Sensitive tumour detection and classification using plasma cell-free DNA methylomes
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20. Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma
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22. Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing
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23. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
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24. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
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25. RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself
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26. Rewiring of the Fruit Metabolome in Tomato Breeding
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27. Genomic analyses provide insights into the history of tomato breeding
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28. Genomic insights into the origin of farming in the ancient Near East
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29. Whole-genome sequencing of multiple Arabidopsis thaliana populations
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30. Efficient introduction of specific homozygous and heterozygous mutations using CRISPR/Cas9
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31. Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma
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32. RNA Sequencing and Analysis
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33. Oxford Nanopore MinION Sequencing and Genome Assembly
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34. Tissue-specific mutation accumulation in human adult stem cells during life
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35. Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms
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36. Actively personalized vaccination trial for newly diagnosed glioblastoma
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37. Meta-analysis of tumor- and T cell-intrinsic mechanisms of sensitization to checkpoint inhibition
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38. Integrated molecular analysis of tumor biopsies on sequential CTLA-4 and PD-1 blockade reveals markers of response and resistance
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39. nhmmer: DNA homology search with profile HMMs
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40. Reference genome sequence of the model plant Setaria
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41. Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations
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42. Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer
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43. The cohesin release factor WAPL restricts chromatin loop extension
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44. The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia
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45. Recovery of gut microbiota of healthy adults following antibiotic exposure
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46. Genomic Analysis of Non- NF2 Meningiomas Reveals Mutations in TRAF7 , KLF4 , AKT1 , and SMO
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47. R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters
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48. Insertion-and-deletion-derived tumour-specific neoantigens and the immunogenic phenotype: a pan-cancer analysis
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50. Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
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51. Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma
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52. ipyrad: Interactive assembly and analysis of RADseq datasets
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53. Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk
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54. Genomics of the origin and evolution of Citrus
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55. Toward better understanding of artifacts in variant calling from high-coverage samples
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57. Lactic acid promotes PD-1 expression in regulatory T cells in highly glycolytic tumor microenvironments
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58. Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants.
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60. Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
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61. Role of TP53 mutations in the origin and evolution of therapy-related acute myeloid leukaemia
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62. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma
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63. Viral and host factors related to the clinical outcome of COVID-19
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64. Recalibrating equus evolution using the genome sequence of an early middle pleistocene horse
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65. A major chromatin regulator determines resistance of tumor cells to T cell–mediated killing
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66. A genomic catalog of Earth’s microbiomes
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67. Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis
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68. Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation
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69. Heterogeneity of genomic evolution and mutational profiles in multiple myeloma
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70. Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions
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73. Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
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74. Landscape of genomic alterations in cervical carcinomas
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75. A chemical genetic roadmap to improved tomato flavor
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76. Therapy-related clonal hematopoiesis in patients with non-hematologic cancers is common and associated with adverse clinical outcomes
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77. Cerebrospinal fluid-derived circulating tumour DNA better represents the genomic alterations of brain tumours than plasma
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78. An organoid platform for ovarian cancer captures intra- and interpatient heterogeneity
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79. Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR
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80. Population genomic and genome-wide association studies of agroclimatic traits in sorghum
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81. Telomeric DNA damage is irreparable and causes persistent DNA-damage-response activation
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82. De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies
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83. The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
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84. Patient-derived lung cancer organoids as in vitro cancer models for therapeutic screening
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85. HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
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86. Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity
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87. Prediction of acute myeloid leukaemia risk in healthy individuals
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88. M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity
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89. Enhancer Evolution across 20 Mammalian Species
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90. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
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91. G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
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92. Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations
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93. Patient-Customized Oligonucleotide Therapy for a Rare Genetic Disease
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94. Neoadjuvant immune checkpoint blockade in high-risk resectable melanoma
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