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The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
Open accessAbstract
Summary: Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation datasets, such as reference gene annotations. The Integrated Genome Browser (IGB) aims to meet this need. IGB is an open source, desktop graphical display tool implemented in Java that supports real-time zooming and panning through a genome; layout of genomic features and datasets in moveable, adjustable tiers; incremental or genome-scale data loading from remote web servers or local files; and dynamic manipulation of quantitative data via genome graphs. Availability: The application and source code are available from http://igb.bioviz.org and http://genoviz.sourceforge.net. Contact: aloraine@uncc.edu
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Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells
Zheng, Y., Josefowicz, S. Z., Kas, A., Chu, T.-T., Gavin, M. A., & Rudensky, A. Y. (2007) · Nature · doi:10.1038/nature05563 · Cited by 835
Integrating biological data – the Distributed Annotation System
Jenkinson, A. M., Albrecht, M., Birney, E., Blankenburg, H., Down, T., Finn, R. D., Hermjakob, H., Hubbard, T. J., Jimenez, R. C., Jones, P., et al. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-s8-s3 · Cited by 100 · cited 1×
“Quickload offers a simple way to load an entire data to establish, consisting of web accessible or local directories simple genome descriptor and annotation files.”
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Cited by
Robinson, J. T., Thorvaldsdóttir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G., & Mesirov, J. P. (2011) · Nature Biotechnology · doi:10.1038/nbt.1754 · Cited by 15,390
MYC regulates the antitumor immune response through CD47 and PD-L1
Casey, S. C., Tong, L., Li, Y., Do, R., Walz, S., Fitzgerald, K. N., Gouw, A. M., Baylot, V., Gütgemann, I., Eilers, M., et al. (2016) · Science · doi:10.1126/science.aac9935 · Cited by 1,403
Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome
Illingworth, R. S., Gruenewald-Schneider, U., Webb, S., Kerr, A. R. W., James, K. D., Turner, D. J., Smith, C., Harrison, D. J., Andrews, R., & Bird, A. P. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1001134 · Cited by 550
Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq
Marchal, C., Sasaki, T., Vera, D., Wilson, K., Sima, J., Rivera-Mulia, J. C., Trevilla-García, C., Nogues, C., Nafie, E., & Gilbert, D. M. (2018) · Nature Protocols · doi:10.1038/nprot.2017.148 · Cited by 209
Cronk, J. C., Derecki, N. C., Ji, E., Xu, Y., Lampano, A. E., Smirnov, I., Baker, W., Norris, G. T., Marin, I., Coddington, N., et al. (2015) · Immunity · doi:10.1016/j.immuni.2015.03.013 · Cited by 199
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piRNA-mediated transgenerational inheritance of an acquired trait
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Gacek-Matthews, A., Berger, H., Sasaki, T., Wittstein, K., Gruber, C., Lewis, Z. A., & Strauss, J. (2016) · PLOS Genetics · doi:10.1371/journal.pgen.1006222 · Cited by 105
Allhorn, M., Arve, S., Brüggemann, H., & Lood, R. (2016) · Scientific Reports · doi:10.1038/srep36412 · Cited by 90
Kosmidis, S., Polyzos, A., Harvey, L., Youssef, M., Denny, C. A., Dranovsky, A., & Kandel, E. R. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.09.077 · Cited by 74
Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses
Berghoff, B. A., Konzer, A., Mank, N. N., Looso, M., Rische, T., Förstner, K. U., Krüger, M., & Klug, G. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003576 · Cited by 54
Induction of a Unique Isoform of the NCOA7 Oxidation Resistance Gene by Interferon β-1b
Yu, L., Croze, E., Yamaguchi, K. D., Tran, T., Reder, A. T., Litvak, V., & Volkert, M. R. (2015) · Journal of Interferon & Cytokine Research · doi:10.1089/jir.2014.0115 · Cited by 41
Dubois-Chevalier, J., Dubois, V., Dehondt, H., Mazrooei, P., Mazuy, C., Sérandour, A. A., Gheeraert, C., Guillaume, P., Baugé, E., Derudas, B., et al. (2017) · Genome Research · doi:10.1101/gr.217075.116 · Cited by 29
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Metadata
- Authors
- Nicol, J. W., Helt, G. A., Blanchard, S. G., Raja, A., & Loraine, A. E.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-08-04
- Volume
- 25
- Issue
- 20
- Pages
- 2730-2731
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2152710395
- Cited by
- 624
- References
- 2
- FWCI
- 16.92
- Type
- journal article
- Language
- en
- Open access
- hybrid
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