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Histone H2B lysine 122 and lysine 130, as the putative targets of Penicillium oxalicum LaeA, play important roles in asexual development, expression of secondary metabolite gene clusters, and extracellular glycoside hydrolase synthesis

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Genome-Wide Mapping of Histone Modifications in Two Species of Leptosphaeria Maculans Showing Contrasting Genomic Organization and Host SpecializationPreprint

Soyer, J. L., Clairet, C., Gay, E. J., Lapalu, N., Rouxel, T., Stukenbrock, E. H., & Fudal, I. (2020) · Research Square · doi:10.21203/rs.3.rs-73550/v1 · Cited by 4 · see citing works

Epigenetic regulation of pathogenicity in fungi

Hardin, A. M., Hardin, C. M., Isaacs, G. D., & Price, M. S. (2025) · Current Genetics · doi:10.1007/s00294-025-01329-6 · Cited by 3 · see citing works

Hybrid CNN and multi-head attention model for analyzing epigenetic mechanisms and gene expression across fungal phylogenetic distances

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1 Chromatin Structure and Function in Neurospora crassa

Courtney, A. J., Ferraro, A. R., Klocko, A. D., & Lewis, Z. (2020) · Springer eBooks · doi:10.1007/978-3-030-49924-2_1 · Cited by 3 · see citing works

Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Fungal Biology and Biotechnology · doi:10.1186/s40694-023-00158-x · Cited by 3 · see citing works

Cross-kingdom microRNA transfer for the control of the anthracnose disease in cassava

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Histone Methyltransferases AcDot1 and AcRmtA Are Involved in Growth Regulation, Secondary Metabolism, and Stress Response in Aspergillus carbonarius

Agnusdei, A., González-García, A., Gerin, D., Pollastro, S., Faretra, F., González-Candelas, L., & Ballester, A. (2025) · Toxins · doi:10.3390/toxins17040196 · Cited by 2 · see citing works

Unconventional approaches for the induction of microbial natural products

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Bacterium-triggered remodeling of chromatin identifies BasR, a novel regulator of fungal natural product biosynthesis

Fischer, J., Müller, S., Gacek‐Matthews, A., Netzker, T., Jäger, N., Scherlach, K., Stroe, M. C., García‐Altares, M., Pezzini, F., Schoeler, H., et al. (2017) · MPG.PuRe (Max Planck Society) · Cited by 2 · see citing works

A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi

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Toward Understanding the Role of Chromatin in Secondary Metabolite Gene Regulation in the Rice Pathogen Fusarium fujikuroi

Studt, L. (2022) · The mycota · doi:10.1007/978-3-031-16503-0_12 · Cited by 2 · see citing works

Annotation of the 12th Chromosome of the Forest Pathogen Fusarium circinatum

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Activation of silent secondary metabolite gene clusters by nucleosome map-guided positioning of the synthetic transcription factor VPR-dCas9Preprint

Schüller, A., Wolansky, L., Berger, H., Studt, L., Gacek‐Matthews, A., Sulyok, M., & Strauss, J. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.02.022053 · Cited by 2 · see citing works

The study of iron‐ and copper‐binding proteome of Fusarium oxysporum and its effector candidates

Kushwah, A. S., Dixit, H., UPADHYAY, V. K., Verma, S. K., & Prasad, R. (2024) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.26696 · Cited by 1 · see citing works

Locus-specific chromatin proteomics using dCas-guided proximity labelling in Aspergillus nidulans

Svoboda, T., Niederdöckl-Loibl, D., Schüller, A., Hummel, K., Schlosser, S., Razzazi‐Fazeli, E., & Strauss, J. (2025) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2025.103973 · Cited by 1 · see citing works

Biosynthetic potential of endophytic fungi from tropical medicinal plants: genomic and metabolomic perspectives

Wulandari, A. P., Lestari, E. N., Wandira, A., Pitaloka, R. P., Nurjannah, L., & Azhari, A. (2026) · Mycology&#58 An International Journal on Fungal Biology · doi:10.1080/21501203.2026.2646460 · Cited by 1 · see citing works

Transcriptional memory drives accelerated re-activation of several biosynthetic gene clusters in Aspergillus nidulans.

Zehetbauer, F., Berger, H., Kastner, F., & Strauss, J. (2024) · Microbiological Research · doi:10.1016/j.micres.2024.127981 · Cited by 1 · see citing works

Detection and quantification of the histone code in the fungal genus AspergillusPreprint

Zhang, X., Noberini, R., Vai, A., Bonaldi, T., Seidl, M. F., & Collemare, J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.01.31.526455

Additional file 6 of Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23575476

Additional file 14 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576050

Additional file 3 of Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23575467

Additional file 2 of Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23575461

Additional file 3 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576059

Additional file 4 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576062

Additional file 6 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576068

Additional file 4 of Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23575470

Additional file 5 of Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23575473

Additional file 5 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576065

Additional file 10 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576038

Additional file 13 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576047

Additional file 7 of Genome analysis of Cephalotrichum gorgonifer and identification of the biosynthetic pathway for rasfonin, an inhibitor of KRAS dependent cancer

Schüller, A., Studt, L., Berger, H., Silvestrini, L., Labuda, R., Güldener, U., Gorfer, M., Bacher, M., Doppler, M., Gasparotto, E., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23575479

Additional file 9 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576077

Additional file 2 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576056

Additional file 7 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576071

Additional file 8 of Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Huang, L., Li, X., Dong, L., Wang, B., & Pan, L. (2021) · Figshare · doi:10.6084/m9.figshare.16576074

Locus-specific chromatin proteomics using dCas-guided proximity labelling in Aspergillus nidulansPreprint

Svoboda, T., Niederdöckl-Loibl, D., Schüller, A., Hummel, K., Schlosser, S., Razzazi‐Fazeli, E., & Strauss, J. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.15.618449

Locus-Specific Chromatin Proteomics Using Dcas-Guided Proximity Labelling in Aspergillus NidulansPreprint

Svoboda, T., Niederdöckl-Loibl, D., Schüller, A., Hummel, K., Schlosser, S., Razzazi‐Fazeli, E., & Strauss, J. (2024) · SSRN Electronic Journal · doi:10.2139/ssrn.5036922

Additional file 14 of Chromatin accessibility profiling in Neurospora crassa reveals molecular features associated with accessible and inaccessible chromatin

Ferraro, A. R., Ameri, A. J., Lu, Z., Kamei, M., Schmitz, R. J., & Lewis, Z. A. (2021) · Figshare · doi:10.6084/m9.figshare.14812398

Evidence of a Demethylase-Independent Role for the H3K4-Specific Histone Demethylases in Aspergillus nidulans and Fusarium graminearum Secondary Metabolism

Bachleitner, S., Sørensen, J. L., Gacek‐Matthews, A., Sulyok, M., Studt, L., & Strauss, J. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01759 · Cited by 26 · see citing works

K dm A , a histone H 3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in A spergillus nidulans

Gacek‐Matthews, A., Noble, L. M., Grünwald‐Gruber, C., Berger, H., Sulyok, M., Marcos, A. T., Strauss, J., & Andrianopoulos, A. (2015) · Molecular Microbiology · doi:10.1111/mmi.12977 · Cited by 53 · see citing works

The role of KdmB, a lysine- dependent histone demethylase in secondary metabolism of Aspergillus nidulans

Bachleitner, S. (2016) · BOK:ePub (Universitätsbibliothek der Universität f Bodenkultur Wien)

Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans

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Molecular Functions of Histone Demethylase MERCK complex on Fungal Development and Secondary Metabolism in Filamentous Fungus Aspergillus nidulans and Aspergillus flavus

Ulaş, M. (2018) · Maynooth University ePrints and eTheses Archive (Maynooth University)