pegas: an R package for population genetics with an integrated–modular approach

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature · doi:10.1038/nature13408 · Cited by 1,208

Insights into human genetic variation and population history from 929 diverse genomes

Bergström, A., McCarthy, S. A., Hui, R., Almarri, M. A., Ayub, Q., Danecek, P., Chen, Y., Felkel, S., Hallast, P., Kamm, J., et al. (2020) · Science · doi:10.1126/science.aay5012 · Cited by 1,020

Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors

Dannemann, M., Andrés, A. M., & Kelso, J. (2016) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2015.11.015 · Cited by 249

The origin of domestication genes in goats

Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., et al. (2020) · Science Advances · doi:10.1126/sciadv.aaz5216 · Cited by 184

Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens

Kaya, C., Generalovic, T. N., Ståhls, G., Hauser, M., Samayoa, A. C., Nunes-Silva, C. G., Roxburgh, H., Wohlfahrt, J., Ewusie, E. A., Kenis, M., et al. (2021) · BMC Biology · doi:10.1186/s12915-021-01029-w · Cited by 149

Hanseniaspora uvarum from Winemaking Environments Show Spatial and Temporal Genetic Clustering

Albertin, W., Setati, M. E., Miot-Sertier, C., Mostert, T. T., Colonna-Ceccaldi, B., Coulon, J., Girard, P., Moine, V., Pillet, M., Salin, F., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01569 · Cited by 124

Archaic adaptive introgression in TBX15/WARS2

Racimo, F., Gokhman, D., Fumagalli, M., Ko, A., Hansen, T., Moltke, I., Albrechtsen, A., Carmel, L., Huerta-Sánchez, E., & Nielsen, R. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw283 · Cited by 101

The complex geography of domestication of the African rice Oryza glaberrima

Choi, J. Y., Zaidem, M., Gutaker, R., Dorph, K., Singh, R. K., & Purugganan, M. D. (2019) · PLoS Genetics · doi:10.1371/journal.pgen.1007414 · Cited by 66

Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds

Alhaddad, H., Khan, R., Grahn, R. A., Gandolfi, B., Mullikin, J. C., Cole, S. A., Gruffydd-Jones, T. J., Häggström, J., Lohi, H., Longeri, M., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0053537 · Cited by 62

A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species

Dai, X., Bian, P., Hu, D., Luo, F., Huang, Y., Jiao, S., Wang, X., Gong, M., Li, R., Cai, Y., et al. (2023) · Genome Research · doi:10.1101/gr.277481.122 · Cited by 43

High frequency of an otherwise rare phenotype in a small and isolated tiger population

Sagar, V., Kaelin, C. B., Natesh, M., Reddy, P. A., Mohapatra, R. K., Chhattani, H., Thatte, P., Vaidyanathan, S., Biswas, S., Bhatt, S., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2025273118 · Cited by 41

Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement

Wales, N., Akman, M., Watson, R. H. B., Sánchez Barreiro, F., Smith, B. D., Gremillion, K. J., Gilbert, M. T. P., & Blackman, B. K. (2019) · Evolutionary Applications · doi:10.1111/eva.12594 · Cited by 35

Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4 + T Cell Subsets during Long-Term Combination Antiretroviral Therapy

Jones, B. R., Miller, R. L., Kinloch, N. N., Tsai, O., Rigsby, H., Sudderuddin, H., Shahid, A., Ganase, B., Brumme, C. J., Harris, M., et al. (2020) · Journal of Virology · doi:10.1128/jvi.01786-19 · Cited by 29

The fine-scale genetic structure and evolution of the Japanese population

Takeuchi, F., Katsuya, T., Kimura, R., Nabika, T., Isomura, M., Ohkubo, T., Tabara, Y., Yamamoto, K., Yokota, M., Liu, X., et al. (2017) · PLOS ONE · doi:10.1371/journal.pone.0185487 · Cited by 28

Invasive Californian death caps develop mushrooms unisexually and bisexually

Wang, Y.-W., McKeon, M. C., Elmore, H., Hess, J., Golan, J., Gage, H., Mao, W., Harrow, E., Gonçalves, S. C., Hull, C. M., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-42317-z · Cited by 20

Oxytocin receptor gene sequences in owl monkeys and other primates show remarkable interspecific regulatory and protein coding variation

Babb, P. L., Fernandez-Duque, E., & Schurr, T. G. (2015) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2015.05.006 · Cited by 16

Effects of habitat fragment size and isolation on the density and genetics of urban red-backed salamanders (Plethodon cinereus)

Wilk, A. J., Donlon, K. C., & Peterman, W. E. (2020) · Urban Ecosystems · doi:10.1007/s11252-020-00958-8 · Cited by 14

Systematics and conservation of an endemic radiation of Accipiter hawks in the Caribbean islands

Catanach, T. A., Halley, M. R., Allen, J. M., Johnson, J. A., Thorstrom, R., Palhano, S., Poor Thunder, C., Gallardo, J. C., & Weckstein, J. D. (2021) · Ornithology · doi:10.1093/ornithology/ukab041 · Cited by 12

Genetic Relationship Among the Kazakh People Based on Y-STR Markers Reveals Evidence of Genetic Variation Among Tribes and Zhuz.

Khussainova, E., Kisselev, I., Iksan, O., Bekmanov, B., Skvortsova, L., Garshin, A., Kuzovleva, E., Zhaniyazov, Z., Zhunussova, G., Musralina, L., et al. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2021.801295 · Cited by 12

Phylogenomics of a Saccharomyces cerevisiae cocoa strain reveals adaptation to a West African fermented food population

Díaz-Muñoz, C., Verce, M., De Vuyst, L., & Weckx, S. (2022) · iScience · doi:10.1016/j.isci.2022.105309 · Cited by 10

Human genetic adaptation related to cellular zinc homeostasis

Roca-Umbert, A., Garcia-Calleja, J., Vogel-González, M., Fierro-Villegas, A., Ill-Raga, G., Herrera-Fernández, V., Bosnjak, A., Muntané, G., Gutiérrez, E., Campelo, F., et al. (2023) · PLoS Genetics · doi:10.1371/journal.pgen.1010950 · Cited by 8