Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites
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Rimicaris exoculata is a deep-sea hydrothermal vent shrimp whose enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystem megafauna along the Mid-Atlantic Ridge, regardless of contrasting geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow, TAG, Logatchev and Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (transmission electron microscopy, scanning electron microscopy and fluorescence in situ hybridization analyses). Filamentous epibionts inserted between the epithelial cell microvilli were observed on all examined samples. Results confirmed resident gut community affiliation to Deferribacteres, Mollicutes, Epsilonproteobacteria and to a lesser extent Gammaproteobacteria lineages. Still a single Deferribacteres phylotype was retrieved at all sites. Four Mollicutes-related operational taxonomic units were distinguished, one being only identified on Rainbow specimens. The topology of ribotype median-joining networks illustrated a community diversification possibly following demographic expansions, suggesting a more ancient evolutionary history and/or a larger effective population size at Rainbow. Finally, the gill chamber community distribution was also analysed through ribotype networks based on sequences from R. exoculata collected at the Rainbow, Snake Pit, TAG, Logatchev and Ashadze sites. Results allow the refining of hypotheses on the epibiont role and transmission pathways.
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R. exoculata hosts a distinct epibiotic microbial community in their gut.
“Moreover, shrimps host a distinct epibiotic microbial community in their gut (Zbinden and Cambon-Bonavita, 2003; Durand et al., 2010, 2015).”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Durand et al., 2015
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- Authors
- Durand, L., Roumagnac, M., Cueff-Gauchard, V., Jan, C., Guri, M., Tessier, C., Haond, M., Crassous, P., Zbinden, M., Arnaud-Haond, S., & Cambon-Bonavita, M.-A.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Ifremer (FR)
- Venue
- FEMS Microbiology Ecology
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-08-30
- Volume
- 91
- Issue
- 10
- Pages
- fiv101
- ISSN
- 0168-6496 (ISSN-L)
- 1574-6941
- OpenAlex
- W2165177732
- Cited by
- 32
- References
- 79
- Citations by year
- 2025: 1 · 2024: 2 · 2023: 2 · 2022: 5 · 2021: 4 · 2020: 5 · 2019: 3 · 2018: 4 · 2017: 3 · 2016: 2 · 2015: 1
- FWCI
- 3.02
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- FEMS Microbiology Ecology (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea) (submittedVersion)
- Funders
- Agence Nationale de la Recherche
- Centre National de la Recherche Scientifique
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
- Keywords
- Rimicaris exoculata, hydrothermal vent shrimp, biogeographic distribution, Mid-Atlantic Ridge, Deferribacteres, Mollicutes, Epsilonproteobacteria, Gammaproteobacteria, microbial community diversity
- MeSH terms
- Gastrointestinal Microbiome, Animals, Atlantic Ocean, Gills, Mycoplasma, RNA, Ribosomal, 16S, Symbiosis, In Situ Hybridization, Fluorescence, Ecosystem, Gammaproteobacteria, Epsilonproteobacteria, Decapoda, Biodiversity, Phylogeography, Hydrothermal Vents
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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