Highlighting of quorum sensing lux genes and their expression in the hydrothermal vent shrimp Rimicaris exoculata ectosymbiontic community. Possible use as biogeographic markers
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Rimicaris exoculata is a caridean shrimp that dominates the fauna at several hydrothermal vent sites of the Mid-Atlantic Ridge. It has two distinct and stable microbial communities. One of these epibiontic bacterial communities is located in the shrimp gut and has a distribution and role that are poorly understood. The second colonizes its enlarged gill chamber and is involved in host nutrition. It is eliminated after each molt, and has colonization processes reminiscent of those of a biofilm. The presence and expression of genes usually involved in quorum sensing (QS) were then studied. At four sites, Rainbow, TAG, Snake Pit and Logatchev, two lux genes were identified in the R. exoculata epibiontic community at different shrimp molt stages and life stages. RT-PCR experiments highlighted lux gene expression activity at TAG, Snake Pit and Rainbow vent sites. Their potential QS activity and their possible roles in epibiont colonization processes are discussed. Moreover, phylogenetic analysis has shown the presence of three clades for luxS (Epsilonproteobacteria) and four clades for luxR (Gammaproteobacteria) genes, each clade being restricted to a single site. These genes are more divergent than the 16S rRNA one. They could therefore be used as biogeographical genetic markers.
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Every 10 days, the microbial community of the cephalothoracic cavity, but not the gut, is eliminated during the molt of the adult, and ectosymbionts rapidly re-colonize the host cephalothoracic cavity.
“Interestingly, every 10 days, the microbial community of the cephalothoracic cavity, but not of the gut, is eliminated during the molt of the adult and ectosymbionts rapidly re-colonize the host cephalothoracic cavity (39, 40).”
From Antimicrobial Peptides and Ectosymbiotic Relationships: Involvement of a Novel Type IIa Crustin in the Life Cycle of a Deep-Sea Vent Shrimp (2020) · cites this paper as [40]
This machinery, in addition to LuxR genes for Gammaproteobacteria, has furthermore been found in Rimicaris exoculata cephalothorax epibionts lineages.
“This machinery, in addition to LuxR genes for the Gammaproteobacteria, has furthermore been found in Rimicaris exoculata cephalothorax epibionts lineages (Le Bloa et al., 2017).”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Le Bloa et al., 2017
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“Such chemical communication molecules, the luxS and luxR genes, were already reported for Epsilonbacteraeota and Gammaproteobacteria symbionts of R. exoculata and are likely to be involved in the regulation of the symbiont population (Le Bloa et al., 2017).”
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“, the one of the cephalothoracic cavity identified in surrounding adults (40).”
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- Authors
- Le Bloa, S., Durand, L., Cueff- Gauchard, V., Le Bars, J., Taupin, L., Marteau, C., Bazire, A., & Cambon-Bonavita, M.-A.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Université de Bretagne Sud (FR)
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2017-03-22
- Volume
- 12
- Issue
- 3
- Pages
- e0174338
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC5362221
- OpenAlex
- W2602374743
- Cited by
- 12
- References
- 81
- Citations by year
- 2022: 3 · 2021: 2 · 2020: 4 · 2019: 2 · 2018: 1
- FWCI
- 0.78
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- PLoS ONE (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea) (submittedVersion, other-oa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Figshare (submittedVersion, cc-by)
- Funders
- Agence Nationale de la Recherche (ANR-10-LABX-19-01, 018-01, ANR-10-LABX-19, ANR-10-LABX-0019, 10-LABX-19-01, ANR-10, ANR-10-LABX)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › bioluminescence and chemiluminescence research
- Keywords
- Rimicaris exoculata, quorum sensing, lux genes, LuxS, LuxR, hydrothermal vent shrimp, gill symbionts, gene expression, molt stage, Epsilonproteobacteria, Gammaproteobacteria, Mid-Atlantic Ridge, TAG hydrothermal field, Rainbow hydrothermal field, Logatchev hydrothermal field
- MeSH terms
- Animals, DNA, Bacterial, Genes, Bacterial, Genetic Markers, Gills, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Gammaproteobacteria, Epsilonproteobacteria, Decapoda, Quorum Sensing, Hydrothermal Vents
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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