Ruminococcus gnavus : friend or foe for human health

A human gut microbial gene catalogue established by metagenomic sequencing

MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624

Human gut microbiome viewed across age and geography

Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815

Gut microbiota in human metabolic health and disease

Fan, Y., & Pedersen, O. (2021) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0433-9 · Cited by 4,724

Gut microbiota, metabolites and host immunity

Rooks, M. G., & Garrett, W. S. (2016) · Nature reviews. Immunology · doi:10.1038/nri.2016.42 · Cited by 3,409

Microbial tryptophan catabolites in health and disease

Roager, H. M., & Licht, T. R. (2018) · Nature Communications · doi:10.1038/s41467-018-05470-4 · Cited by 2,236

Gut microbiota-derived metabolites as key actors in inflammatory bowel disease

Lavelle, A., & Sokol, H. (2020) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-019-0258-z · Cited by 2,015

Gut microbiome structure and metabolic activity in inflammatory bowel disease

Franzosa, E. A., Sirota-Madi, A., Avila-Pacheco, J., Fornelos, N., Haiser, H. J., Reinker, S., Vatanen, T., Hall, A. B., Mallick, H., McIver, L. J., et al. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0306-4 · Cited by 1,995

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

Kaoutari, A. E., Armougom, F., Gordon, J. I., Raoult, D., & Henrissat, B. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro3050 · Cited by 1,683

The composition of the gut microbiota throughout life, with an emphasis on early life

Rodríguez, J. M., Murphy, K., Stanton, C., Ross, R. P., Kober, O. I., Juge, N., Avershina, E., Rudi, K., Narbad, A., Jenmalm, M. C., et al. (2015) · Microbial Ecology in Health and Disease · doi:10.3402/mehd.v26.26050 · Cited by 1,414

Hylocereus undatus flower suppresses DSS-induced colitis in mice by reducing intestinal inflammation, repairing the intestinal physical barrier, and modulating gut and lung microbiota

Liao, W., Wu, H., Pang, L., He, B., Tong, J., Qin, J., Li, L., Liu, W. Y., Zhou, X., Huang, S., et al. (2023) · Journal of Functional Foods · doi:10.1016/j.jff.2023.105820 · Cited by 10

Effects of bathing in different hot spring types on Japanese gut microbiota

Takeda, M., Choi, J.-M., Maeda, T., & Managi, S. (2024) · Scientific Reports · doi:10.1038/s41598-024-52895-7 · Cited by 9

Microbiome and its relevance to indigenous inflammatory bowel diseases in China

Han, A., Yang, M., Chen, B., Cao, G., Xu, J., Meng, T., Liu, Y., Wang, Z., Zhou, Y., Xu, N., et al. (2024) · Gene · doi:10.1016/j.gene.2024.148257 · Cited by 9

Specific Bacterial Co-abundance Groups Are Associated With Inflammatory Status in Patients With Ulcerative Colitis

Jangi, S., Zhao, N., Hsia, K., Park, Y. S., Michaud, D. S., & Yoon, H. (2024) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjae125 · Cited by 8

Dysbiosis-associated gut bacterium Ruminococcus gnavus varies at the strain level in its ability to utilize key mucin component sialic acid

Sokolovskaya, O. M., Uzunović, J., Peng, Y., Okumura, M., Wang, L. M., Zhou, Y., Lai, Z., Skippington, E., & Tan, M. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.03090-24 · Cited by 10

Comparison of Three Sympatric Desert Lizards: Digestive Tract Structure, Digestive Enzyme Activities, Gut Microbiota, and Metabolites

Yang, Y., Wang, Z., & Wu, R. (2025) · Integrative Zoology · doi:10.1111/1749-4877.70007 · Cited by 8

Gut microbiota in early and established stages of rheumatoid arthritis: from pathogenesis to promising prevention and treatment

Chen, S., Hoàng, M. H., Hu, D., He, Q., & Gao, Y. (2026) · Annals of Medicine · doi:10.1080/07853890.2026.2613484 · Cited by 8

Clinical and microbiological characteristics of Ruminococcus gnavus bacteremia and intra-abdominal infection

Watanabe, N., Watari, T., Otsuka, Y., Hosokawa, N., Yamagata, K., & Fujioka, M. (2024) · Anaerobe · doi:10.1016/j.anaerobe.2024.102818 · Cited by 8

Alterations in the Gut Microbiome Composition of People Living with HIV in the Asia–Pacific Region: A Systematic Review

Salvador, P. B. U., Altavas, P. J. D. R., del Rosario, M. A. S., Ornos, E. D. B., & Dalmacio, L. M. M. (2024) · Clinics and Practice · doi:10.3390/clinpract14030066 · Cited by 8

Study of Microbiota Associated to Early Tumors Can Shed Light on Colon Carcinogenesis

Aspesi, A., Vecchia, M. L., Sala, G., Ghelardi, E., & Dianzani, I. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms252413308 · Cited by 8

Aryl Hydrocarbon Receptor Establishes a Delicate Balance between the Level of the Trace Amine Tryptamine and Monoamine Oxidase Activity in the Brain and Periphery in Health and Conditions such as Neurodegenerative, Neurodevelopmental, and Psychiatric Disorders

Kot, M. (2025) · Current Neuropharmacology · doi:10.2174/011570159x340635241022113450 · Cited by 8

Bicarbonate-Rich Mineral Water Mitigates Hypoxia-Induced Osteoporosis in Mice via Gut Microbiota and Metabolic Pathway Regulation

Ding, Y., Liu, W., Zhang, X., Xue, B., Yang, X., Zhao, C., Li, C., Wang, S., Qiu, Z., Li, C., et al. (2025) · Nutrients · doi:10.3390/nu17060998 · Cited by 7

Why do babies cry? Exploring the role of the gut microbiota in infantile colic, constipation, and cramps in the KOALA birth cohort study

Barnett, D. J. M., Thijs, C. T., Mommers, M., Endika, M. F., Klostermann, C. E., Schols, H. A., Smidt, H., Nauta, A., Arts, I. C. W., & Penders, J. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2485326 · Cited by 7

Development of antibiotic resistome in premature infants

Keshet, A., Hochwald, O., Lavon, A., Borenstein‐Levin, L., Shoer, S., Godneva, A., Glantz-Gashai, Y., Cohen-Dolev, N., Timstut, F., Lotan‐Pompan, M., et al. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.115515 · Cited by 8

Gut-brain axis and vascular dementia: a review on mechanisms and Chinese herbal medicine therapeutics

Wang, D., Yao, H., Wang, L., Lu, B., Liu, W., Li, J., Gong, Y., Cai, Y., Li, Y., Cai, X., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1564928 · Cited by 7

Hematopoietic stem cell transplantation disrupts age-related gut microbiota signatures in pediatric and adult recipients

Leardini, D., Roberto, M., Roggiani, S., Muratore, E., Fabbrini, M., Storci, G., Tomassini, E., Dan, E., Schipani, A., Matteis, S. D., et al. (2025) · Bone Marrow Transplantation · doi:10.1038/s41409-025-02713-z · Cited by 10

Digestive properties in fermentation driven interactions of plant polysaccharides with gut microbiota and their health implications

Jiang, Z., Li, B., Zhao, R., Zhao, X., Zhang, X., & Jiao, L. (2026) · Frontiers in Pharmacology · doi:10.3389/fphar.2026.1733849 · Cited by 7

The genetics of urinary microbiome, an exploration of the trigger in calcium oxalate stone

Yang, Y., Miao, L.-T., Lu, Y., & Wang, S. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1260278 · Cited by 7

Clostridioides difficile infection is associated with differences in transcriptionally active microbial communities

See, J. R. C., Leister, J., Wright, J., Kruse, P. I., Khedekar, M., Besch, C. E., Kumamoto, C. A., Madden, G. R., Stewart, D. B., & Lamendella, R. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1398018 · Cited by 7

Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance

Gorman, E. D., & Lladser, M. E. (2024) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1011543 · Cited by 7

The effects of β-mannanase supplementation on growth performance, digestive enzyme activity, cecal microbial communities, and short-chain fatty acid production in broiler chickens fed diets with different metabolizable energy levels

Zhang, L., Huan, H., Zhang, K., Yuanlu, T., Yan, J., Zhang, H., & Xi, Y. (2024) · Journal of Animal Science · doi:10.1093/jas/skae184 · Cited by 7

Distinct gut microbiomes in Thai patients with colorectal polyps

Intarajak, T., Udomchaiprasertkul, W., Khoiri, A. N., Sutheeworapong, S., Kusonmano, K., Kittichotirat, W., Thammarongtham, C., & Cheevadhanarak, S. (2024) · World Journal of Gastroenterology · doi:10.3748/wjg.v30.i27.3336 · Cited by 8

Nanoplastics exposure simplifies the network structure of sea cucumber (Apostichopus japonicus) gut microbiota and improves cluster randomness

Xia, X., Wang, L., Pei, H., Dong, C., Zhang, Y., & Ding, J. (2024) · Environmental Pollution · doi:10.1016/j.envpol.2024.124663 · Cited by 8

Metagenomics and metabolomics to investigate the effect of Amygdalus mongolica oil on intestinal microbiota and serum metabolites in rats

Wang, R.-X., Zhou, H.-B., Gao, J.-X., Bai, W., Wang, J., Bai, Y., Jiang, S.-Y., Chang, H. H., & Shi, S. (2024) · Phytomedicine · doi:10.1016/j.phymed.2024.156335 · Cited by 7

High-dose thiamine supplementation ameliorates obesity induced by a high-fat and high-fructose diet in mice by reshaping gut microbiota

Xia, Y., Wang, L., Qiu, Y., & Ge, W. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2025.1532581 · Cited by 7

Gut Bacteria Encode Reductases that Biotransform Steroid HormonesPreprint

Arp, G., Jiang, A., Dufault‐Thompson, K., Levy, S., Zhong, A., Wassan, J. T., Grant, M., Li, Y., Hall, B., & Jiang, X. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.04.616736 · Cited by 7

Mapping the geographical distribution of the mucosa-associated gut microbiome in GI-symptomatic children with autism spectrum disorder

Reeves, K. D., Figuereo, Y. F., Weis, V. G., Hsu, F., Engevik, M. A., Krigsman, A., & Walker, S. J. (2024) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00101.2024 · Cited by 6

Exploring the impact of gut microbiota-mediated regulation of exosomal miRNAs from bone marrow mesenchymal stem cells on the regulation of bone metabolism

He, B., Shen, X., Feng, L., Zhou, R., Xue, H., Fan, X., Wang, Z., Guo, X., Yu, F., Luo, G., et al. (2025) · Stem Cell Research & Therapy · doi:10.1186/s13287-025-04256-y · Cited by 8

Gut microbiota and its influence on the Gut-Brain axis in comparison with chemotherapy patients and cancer-free control data in Breast cancer—A computational perspective

Loganathan, T., & Doss, C. G. P. (2025) · PLoS ONE · doi:10.1371/journal.pone.0324742 · Cited by 6

Reciprocal interaction between gut microbiota and aloe-emodin results in altered microbiome composition and metabolism of aloe-emodin

Walia, R., Chaudhuri, S. R., & Dey, P. (2025) · Food Bioscience · doi:10.1016/j.fbio.2025.107061 · Cited by 6

Gut commensal microbiota drive tailored macrophage responses

Jones, J. P., García-Martínez, K. Y., Lee, Y.-Y., Rhee, M. W., Nath, R. R., Takahashi, S., Grodner, B., Vlaminck, I. D., Leifer, C. A., & Brito, I. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116157 · Cited by 7

Gut Dysbiosis and Plasma Trimethylamine Oxide Are Associated with Subclinical Coronary Atherosclerosis in Obese Patients with Metabolic Dysfunction-Associated Steatotic Liver Disease

Islam, K., Kongsomboonchoke, P., Chayanupatkul, M., Tumkosit, M., Chattranukulchai, P., Prombutara, P., & Tangkijvanich, P. (2025) · Nutrients · doi:10.3390/nu17172759 · Cited by 6

Maternal Faecalibacterium pathobionts and low-fiber diets synergize to impact offspring health: implications for atopic dermatitis

Lee, D., Park, J., Park, S., Hwang, J., Kim, S., Kee, S.-H., & Kim, H. S. (2025) · Microbiome · doi:10.1186/s40168-025-02194-8 · Cited by 6

Calculating fast differential genome coverages among metagenomic sources using micov

Weng, Y., Guccione, C., McDonald, D., Oles, R. E., Devkota, S., Kopylova, E., Sepich‐Poore, G. D., Salido, R. A., Din, M. O., Song, S. J., et al. (2025) · Communications Biology · doi:10.1038/s42003-025-09007-6 · Cited by 6

Metabolism and gene expression models for the microbiome reveal how diet and metabolic dysbiosis impact disease

Tibocha‐Bonilla, J. D., Santibáñez, R., Weng, Y., Kumar, M., & Zengler, K. (2025) · Cell Systems · doi:10.1016/j.cels.2025.101451 · Cited by 6

Causal relationship between gut microbiota and gastric cancer: A two‑sample Mendelian randomization analysis

Zhang, J., Dong, C., Lin, Y., Shang, L., Ma, J., Hu, R., & Wang, H. (2024) · Molecular and Clinical Oncology · doi:10.3892/mco.2024.2736 · Cited by 6

Is there a role for intestinal sporobiota in the antimicrobial resistance crisis?

Romero-Rodríguez, A., Ruiz‐Villafán, B., Sánchez, S., & Paredes‐Sabja, D. (2024) · Microbiological Research · doi:10.1016/j.micres.2024.127870 · Cited by 6

Hawthorn pectin plays a protective role in myocardial ischaemia by regulating intestinal flora and short chain fatty acids

Lou, J., Zhang, B., Yu, Z., Liu, M., & Qu, Y. (2024) · Current Research in Food Science · doi:10.1016/j.crfs.2024.100863 · Cited by 6

Metagenomic analysis reveals effects of gut microbiome in response to neoadjuvant chemoradiotherapy in advanced rectal cancer

Chen, H., Zeng, M., Batool, S. S., Zhao, Y., Zheng, Y., Zhou, J., Liu, K., & Huang, J. (2024) · Genomics · doi:10.1016/j.ygeno.2024.110951 · Cited by 6

A Small Intestinal Helminth Infection Alters Colonic Mucus and Shapes the Colonic Mucus Microbiome

Mules, T. C., Vacca, F., Cait, A., Yumnam, B., Schmidt, A., Lavender, B., Maclean, K., Noble, S., Gasser, O., Camberis, M., et al. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms252212015 · Cited by 6

Gut microbiome and clinical and lifestyle host factors associated with recurrent positive RT-PCR for SARS-CoV-2

Jiménez-Arroyo, C., Molinero, N., Sabater, C., Margollés, A., Terron-Camero, L. C., Andrés‐León, E., Ramos, M., Val, M. D., & Moreno-Arribas, M. V. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1494193 · Cited by 6

Machine learning algorithms reveal gut microbiota signatures associated with chronic hepatitis B-related hepatic fibrosis

Zhu, Y., Geng, S.-Y., Chen, Y., Ru, Q., Zheng, Y. Z., Jiang, N., Zhu, F.-Y., & Zhang, Y. (2025) · World Journal of Gastroenterology · doi:10.3748/wjg.v31.i16.105985 · Cited by 6

Microbiota mechanisms in cancer progression and therapy

Zhang, X., Fam, K. T., Dai, T., & Hang, H. C. (2025) · Cell chemical biology · doi:10.1016/j.chembiol.2025.04.005 · Cited by 7

Thomasclavelia ramosa and alcohol-related hepatocellular carcinoma: a microbial culturomics study

Wasfy, R. M., Abdoulaye, A. I., Borentain, P., Mbaye, B., Alou, M. T., Caputo, A., Andrieu, C., Mottola, G., Levasseur, A., Million, M., et al. (2025) · Gut Pathogens · doi:10.1186/s13099-025-00703-6 · Cited by 6

Microbial regulation of stress-associated signaling molecules and its role in health and disease

Sie, C., & Tropini, C. (2026) · npj Biofilms and Microbiomes · doi:10.1038/s41522-026-00932-w · Cited by 7

The Circadian Rhythm of the Behavior and Gut Microbiota in Dybowski’s Frogs (Rana dybowskii) during the Autumn Migration Period

Hu, N., Li, Y., Wang, M., Ji, H., Zhang, X., San, B., & Shi, H. (2024) · Life · doi:10.3390/life14030322 · Cited by 5

Beneficial effects of American ginseng (Panax quinquefolius L.) extract residue as a feed additive on production, health status, and gastrointestinal bacteria in sika deer (Cervus nippon)

Wu, Y., Zhao, S., Zheng, P., Liu, H., Qu, Z., Hou, W., Yuan, W., Feng, T., Zhan, X., Shen, J., et al. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1344905 · Cited by 5

Gut microbiota, circulating inflammatory proteins and sepsis: a bi-directional Mendelian randomization study

Li, Z., Lin, L., Kong, Y., Feng, J., Ren, X., Wang, Y., Chen, X., Wu, S., Yang, R., Li, J., et al. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1398756 · Cited by 5

Human gut microbiota-fermented asparagus powder protects human epithelial cells from injury and inflammation

Rajakaruna, S., Bandow, B., Pérez-Burillo, S., Navajas-Porras, B., Rufián‐Henares, J. Á., Cool, D. R., Cho, K., & Paliy, O. (2025) · Food & Function · doi:10.1039/d4fo03504f · Cited by 5

Beneficial impact of MTGase-modified fish gelatin on collagen supplementation in rats: Insights from serum metabolomics and gut microbiota

Peng, C., Fang, T., Lin, H.-B., Zhang, N., Hu, Z., Wang, H., Su, M.-H., Sha, X., & Tu, Z. (2025) · Food Research International · doi:10.1016/j.foodres.2025.116295 · Cited by 5

The effect of alcohol withdrawal therapy on gut microbiota in alcohol use disorder and its link to inflammation and craving

Proskynitopoulos, P. J., Woltemate, S., Rhein, M., Böke, I., Molks, J., Schröder, S., Schneider, H., Bleich, S., Frieling, H., Geffers, R., et al. (2025) · Alcoholism Clinical and Experimental Research · doi:10.1111/acer.70128 · Cited by 5

Isolation and characterization of strictly anaerobic cellulolytic rumen bacterial species from Sahiwal cattle

Alam, M. A., Hossain, M. J., Sohidullah, M., Khan, M. S. R., & Islam, K. M. S. (2024) · Journal of Advanced Veterinary and Animal Research · doi:10.5455/javar.2024.k740 · Cited by 5

Premodulator microbiome alterations associated with postmodulator growth outcomes in pediatric cystic fibrosis: Can we predict outcomes?

Sanville, J. L., O’Toole, G. A., Madan, J. C., & Coker, M. O. (2024) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1002/jpn3.12350 · Cited by 5

Effects of fecal microbiota transplantation combined with selenium on intestinal microbiota in mice with colorectal cancer

Su, Y., Fan, X., Cai, X., Ning, J., & Shen, M. (2024) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2024.150580 · Cited by 5

Effect of Melatonin on the Production Performance, Blood Biochemical Parameters, Nutrient Digestibility, and Gastrointestinal Microbiome of Liaoning Cashmere Goats

Zheng, Z., Han, D., Su, Z., He, L., & Zhang, W. (2024) · Agriculture · doi:10.3390/agriculture14111983 · Cited by 5

Assessment of Areca Nut Bioactivities in Western Diet-Induced Mice NAFLD Model

Yi, S., Chen, K., Sakao, K., Ikenaga, M., Wang, Y., & Hou, D. (2023) · Nutrients · doi:10.3390/nu15102403 · Cited by 5

Deciphering the Language of Intestinal Microbiota Associated with Sepsis, Organ Failure, and Mortality in Patients with Alcohol-Related Acute-on-Chronic Liver Failure (ACLF): A Pioneer Study in Latin America

Castaño-Jiménez, P. A., Baltazar-Díaz, T. A., González-Hernández, L. A., García-Salcido, R., Klimov‐Kravtchenko, K., Andrade-Villanueva, J. F., Arellano-Arteaga, K. J., Padilla-Sánchez, M. P., del Toro‐Arreola, S., & Bueno‐Topete, M. R. (2025) · Microorganisms · doi:10.3390/microorganisms13051138 · Cited by 4

Ruminococcus gnavus and Biofilm Markers in Feces From Primary Bile Acid Diarrhea Patients Indicate New Disease Mechanisms and Potential for Diagnostic Testing

Hillman, E. B. M., Carson, D., Walters, J. R. F., Fritzsche, M., Mate, R., Chappell, K. E., Chekmeneva, E., Romero, M. G., Lewis, S. J., Rijpkema, S. G. T., et al. (2025) · Gastro Hep Advances · doi:10.1016/j.gastha.2025.100712 · Cited by 5

Altered gut microbial networks and metabolic pathways in multiple system atrophy: a comparative 16S rRNA study

Liu, P.-C., Cheng, S.-Y., Li, C.-C., Wang, Y.-K., Tseng, Y. J., & Kuo, M. (2025) · Frontiers in Neuroscience · doi:10.3389/fnins.2025.1623165 · Cited by 4

Longitudinal multiomics analysis of endocrine therapy effects and gut microbiota in breast cancer recurrence

Hou, M., Li, C.-L., Moi, S., Chen, F.-M., Chen, J.-Y., Shih, S., Kan, J., Yang, S., & Chiang, C.-P. (2026) · Communications Medicine · doi:10.1038/s43856-026-01384-1 · Cited by 5

Exploring the gut microbiota’s effect on temporomandibular joint disorder: a two−sample Mendelian randomization analysis

Zhao, K., Shuaiqi, J. I., Jiang, H., Qian, Y., & Zhang, W. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1361373 · Cited by 4

Integrated gut microbiome and UHPLC-MS metabolomics to reveal the prevention mechanism of pidanjiangtang granules on IGT Rats

Xie, Y., Li, Z., Fan, Y., Liu, X., Yi, R., Gan, Y., Yang, Z., & Liu, S. (2024) · Phytomedicine · doi:10.1016/j.phymed.2024.156201 · Cited by 5

Interrelationship between altered metabolites and the gut microbiota in people living with HIV with different immune responses to antiretroviral therapy

Tian, X., Gao, Z., Xie, Y., Lu, X., Zhao, Y., Yao, P., Dong, M., Yu, L., & Wu, N. (2025) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2025.100340 · Cited by 4

Dysregulated Intestinal Host–Microbe Interactions in Systemic Lupus Erythematosus: Insights from Patients and Mouse Models

Kume, M., Din, J., & Zegarra-Ruiz, D. F. (2025) · Microorganisms · doi:10.3390/microorganisms13030556 · Cited by 5

The human gut microbiome and sleep across adulthood: associations and therapeutic potential

Cavon, J., Basso, M., Kadosh, K. C., & Gibbons, S. M. (2025) · Letters in Applied Microbiology · doi:10.1093/lambio/ovaf043 · Cited by 4

Effects of pumpkin and fermented whey on fecal microbiota profile against AFB1 and OTA exposure in Wistar rats

Lázaro, Á., Gómez‐Ramírez, P., Donat, P. V., Cimbalo, A., & Manyes, L. (2025) · Toxicology Mechanisms and Methods · doi:10.1080/15376516.2025.2484636 · Cited by 4

Impact of maternal obesity and mode of delivery on the newborn skin and oral microbiomes

Seifert, A., Ingram, K., Eko, E. N., Nunziato, J. D., Ahrens, M. L., & Howell, B. (2025) · Journal of Medical Microbiology · doi:10.1099/jmm.0.002000 · Cited by 4

The Role of Beneficial Microbiota in COVID-19: Insights from Key Bacterial Genera

Rampelotto, P. H., Taufer, C. R., & da Silva, J. (2025) · Microorganisms · doi:10.3390/microorganisms13051029 · Cited by 4

The Effect of Chitosan Supplementation on the Gut Microbiota and Various Health Factors in Icelandic Females: A Placebo‐Controlled, Double‐Blind, Randomized Trial

Rúnarsdóttir, T. R., Skírnisdóttir, S., Thors, H., Harðardóttir, H., Corral‐Jara, K. F., Klonowski, A. M., Halldorsson, T. I., Marteinsson, V., & Guðjónsdóttir, M. (2025) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.70137 · Cited by 4

Distinct in vitro utilization and degradation of porcine gastric mucin glycans by human intestinal bacteria

de Ram, C., Berkhout, M. D., Pandeirada, C. O., Vincken, J., Hooiveld, G. J. E. J., Belzer, C., & Schols, H. A. (2025) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiaf066 · Cited by 4

Role of Ruminococcus gnavus in the elderly with cognitive impairment: A case-control study and an animal experiment

Wei, Y., Huang, Y., Wang, S.-A., Liu, K., Zhong, Q., Fan, W., Cao, B., Chen, H.-W., Liang, Y., Li, Q., et al. (2025) · Journal of Alzheimer s Disease · doi:10.1177/13872877251372522 · Cited by 4

Pathobionts in the microbiome: Drivers of disease and targets for treatment

Bharathi, S., Rajan, Y. A. P. A. S., Prakash, S., Immanuel, G., & Ramasubburayan, R. (2025) · Microbial Pathogenesis · doi:10.1016/j.micpath.2025.108268 · Cited by 6

Gut microbiota and metabolic disruption induced by food chain-transferred nanoplastics: A mediating role of CYP26A1 in retinoic acid toxicity

Qu, X., Nan, X., Wang, Y., Sun, H., Miao, J., Shi, Y., Li, Y., Qu, R., Wang, M., Zhang, N., et al. (2026) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2026.119806 · Cited by 4

Cross-feeding interactions of gut microbes mediated by O-linked glycans from casein glycomacropeptide

González-Morelo, K. J., & Garrido, D. A. (2024) · Journal of Functional Foods · doi:10.1016/j.jff.2024.106269 · Cited by 4

Microbiome characterization of patients with Crohn disease and the use of fecal microbiota transplantation: A review

Chen, S., Zhang, D., Li, D., Zeng, F., Chen, C., & Bai, F. (2025) · Medicine · doi:10.1097/md.0000000000041262 · Cited by 4

Effects of high salt intake on glucose metabolism, liver function, and the microbiome in rats: influence of ACE inhibitors and angiotensin II receptor blockers

Zhang, X., Gaballa, M. M. S., Hasan, A. A., Liu, Y., Hocher, J.-G., Chen, X., Liu, L., Li, J., Wigger, D., Reichetzeder, C., et al. (2025) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.01036.2024 · Cited by 4

Exclusive breastfeeding is associated with the gut microbiome maturation in infants according to delivery mode

Naspolini, N. F., Schüroff, P. A., Vanzele, P. A. R., Pereira-Santos, D., Brigante, T. A. V., Bonham, K. S., Fujita, A., Passos‐Bueno, M. R., Beltrão-Braga, P. C. B., de Carvalho, A. C. P. L. F., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2493900 · Cited by 4

Gut Expansion of a Human Lupus Pathobiont is Associated With Autoantibody Production and T Cell Dysregulation

Ma, L., Ge, Y., Six, N., Choi, S., Brown, J., Garcia, A. C., Mohamadzadeh, M., Silverman, G. J., & Morel, L. M. (2025) · ACR Open Rheumatology · doi:10.1002/acr2.70033 · Cited by 3

Disease signatures in the gut metagenome of a prospective family cohort of inflammatory bowel diseasePreprint

Rühlemann, M. C., Waschina, S., Wacker, E. M., Rausch, P., Schaan, A. P., Zafroon, Z., Franzpötter, K., Jacobs, G., Ellinghaus, D., Kruse, R., et al. (2023) · medRxiv · doi:10.1101/2023.12.10.23299783 · Cited by 4

Changes in Gut Microbiota After Statin Administration: A New Candidate Mechanism for Statin-Associated New-Onset Type 2 Diabetes

Sakuma, I. (2023) · Arteriosclerosis Thrombosis and Vascular Biology · doi:10.1161/atvbaha.123.320401 · Cited by 4

Synbiotic formulation of fermented yak milk by Lacticaseibacillus paracasei YT805 and inulin and its efficacy on gut microbiota modulation

Yang, J., Liu, Y., Liu, J., Zhang, X., Zhu, Y., Chen, Y., Gong, G., & Tao, M. (2025) · LWT · doi:10.1016/j.lwt.2025.118185 · Cited by 3

Combining site-specific gut microbiome and mycobiome profiling with clinical indicators for effective management of pediatric Crohn’s disease

Kim, D.-S., Park, S., Lee, Y. Q., Kwon, Y., Choe, Y. H., Kim, M. J., & Lee, D. (2025) · iScience · doi:10.1016/j.isci.2025.113160 · Cited by 3

Microbial Shift Over 1 Year Among Patients With Newly Diagnosed Crohn's Disease Reflects Clinical Trajectory and Exposure to Biologic Treatment: A Prospective Real-World Inception Cohort

Fischler, T. S., Reshef, L., Godny, L., Goren, I., Ollech, J. E., Avni‐Biron, I., Eran, H. B., Snir, Y., Broitman, Y., Pfeffer‐Gik, T., et al. (2025) · Clinical and Translational Gastroenterology · doi:10.14309/ctg.0000000000000902 · Cited by 3

Fungal‐Bacterial Dysbiosis in IBD: Microbial Biomarkers of Disease Activity

Arribas‐Rodríguez, E., García‐Pizarro, M., Prado, Á. D., Santiago‐Carretero, M., Hernández, M., Jiménez, B. V., García‐Alonso, J., Barrio, J., Bouza, J. M. E., Arranz, E. M., et al. (2025) · MicrobiologyOpen · doi:10.1002/mbo3.70088 · Cited by 3

A genetic toolkit for the human gut bacterium Mediterraneibacter gnavus identifies capsular polysaccharides as a competitive colonization factor

Obana, N., Nakato, G., Nomura, N., & Fukuda, S. (2026) · Nature Communications · doi:10.1038/s41467-026-69022-x · Cited by 3

Immunoinformatic-based design of a multi-epitope subunit vaccine against Ruminococcus torques using subtractive proteomics and molecular dynamics simulations

Kousar, S., Manzoor, I., Muhammad, S., Almohaimeed, H. M., Hasan, T., Fenibo, E. O., & Matambo, T. S. (2026) · Scientific Reports · doi:10.1038/s41598-026-45572-4 · Cited by 3

Mechanistic insights into gut microbiota–driven autoimmunity in rheumatoid arthritis

Li, J., Chen, X., & Xie, X. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1812972 · Cited by 3

Functional changes in the gut microbiota are associated with the intestinal phenotype in A20 haploinsufficiency

Elhani, I., Bredon, M., Enea, D., Desmons, A., Arrivé, L., Bazille, C., Lefevre, A., Aouba, A., Bigot, A., de Moreuil, C., et al. (2026) · Pediatric Allergy and Immunology · doi:10.1111/pai.70343 · Cited by 3

Lactococcus lactis ZB2 from Zhejiang fermented bamboo shoots enhance intestinal barrier and immune homeostasis in mice

Xu, T., Lu, R., Shi, Y., Fang, Y., & Lou, H. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1847505 · Cited by 3

Auricularia heimuer Ameliorates Oxidative Stress and Inflammation to Inhibit Atherosclerosis Development in ApoE−/− Mice

Zhao, J., Ma, S., Hu, Y., Ling, J., Wang, Z., Wang, J., Chen, J., & Zhang, Y. (2025) · Nutrients · doi:10.3390/nu17172799 · Cited by 3

Pinoresinol diglucoside alleviates ovariectomy-induced osteoporosis by modulating the “Microbiota–gut–bone” axis

Li, N., Pei, H., Luo, M., Deng, L., Zhang, X., Ma, C., Wang, F., Yang, P., Li, D., Li, L., et al. (2025) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2025.152867 · Cited by 4

Multifrequency-STD NMR unveils the first Michaelis complex of an intramolecular trans-sialidase from Ruminococcus gnavus

Monaco, S., Tailford, L. E., Bell, A., Wallace, M., Juge, N., & Angulo, J. (2024) · Bioorganic Chemistry · doi:10.1016/j.bioorg.2024.107906 · Cited by 3

Unveiling Ruminococcus gnavus bacteremia: Clinical characteristics and implications

Kamegai, K., Hayakawa, K., Saito, S., Mezaki, K., Sakurai, A., & Ohmagari, N. (2024) · Journal of Infection and Chemotherapy · doi:10.1016/j.jiac.2024.11.008 · Cited by 3

Gut microbiota and relevant metabolites analysis in perianal abscess of infants

Wang, S., Zhang, J., Fan, M., Dong, Z., Li, L., Xu, J., Yin, W., & Xu, X. (2025) · BMC Microbiology · doi:10.1186/s12866-025-04020-5 · Cited by 3

Plasma proteins mediate the effects of the gut microbiota on the development of head and neck cancer: a two-sample and mediated Mendelian randomized study

Rao, J.-H., Zhang, W.-D., Zha, C., Zhang, M., Xing, Y.-J., Wang, Z.-H., Yu, J., He, D.-Y., Sun, C., & Li, L. (2025) · Discover Oncology · doi:10.1007/s12672-025-01983-9 · Cited by 2

Unveiling the diagnostic and pro-inflammatory role of crohn’s disease: insights from 16 S-guided discovery and species-specific validation

Xu, Y., Xie, R., Weng, Y., Fang, Y., Chen, H., Tao, S., Zhang, H., Ye, Y., Deng, X., Han, A., et al. (2025) · BMC Gastroenterology · doi:10.1186/s12876-025-04061-0 · Cited by 2

Gut microbiome signatures in iNPH: Insights from a shotgun metagenomics study

Park, R., Chevalier, C., Kieser, S., Marizzoni, M., Paquis, A., Armand, S., Scheffler, M., Allali, G., Assal, F., Momjian, S., et al. (2025) · PLoS ONE · doi:10.1371/journal.pone.0330251 · Cited by 3

Gut Microbiota as a Key Player in Health and Disease with a Focus on Long-Term Alterations in Post-COVID

Bačić, A., Gmizić, T., Takić, T., Zdravkovic, M. D., Branković, M., & Rajilić-Stojanović, M. D. (2025) · Digestive Diseases · doi:10.1159/000548507 · Cited by 3

Food- vs. supplement-based very-low-energy diets and gut microbiome composition in women with high body mass index: A randomized controlled trial

Lane, M. M., McGuinness, A. J., Mohebbi, M., Lotfaliany, M., Loughman, A., O’Hely, M., O'Neil, A., Batti, J., Kotowicz, M. A., Berk, M., et al. (2025) · Cell Reports Medicine · doi:10.1016/j.xcrm.2025.102417 · Cited by 3

Causal effects of gut microbiota on diabetic kidney disease: insights from 16S rRNA sequencing and bidirectional Mendelian randomization

Wang, W., Zhang, L., & Zhou, Y. (2025) · Renal Failure · doi:10.1080/0886022x.2025.2566381 · Cited by 2

Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health statusPreprint

Nooij, S., Plomp, N., Sanders, I. M. J. G., Schout, L., Jong, A. E. V. D. M., Terveer, E. M., Norman, J. M., Karcher, N., Larralde, M. F., Vossen, R. H. A. M., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.06.27.600998

Microbe Profile: Ruminococcus gnavus: the yin and yang of human gut symbionts

Juge, N. (2023) · Microbiology · doi:10.1099/mic.0.001383 · Cited by 23

Additional file 6: Figure S1. of A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

Hall, A., Yassour, M., Sauk, J., Garner, A., Jiang, X., Arthur, T., Lagoudas, G., Vatanen, T., Fornelos, N., Wilson, R. G., et al. (2017) · Figshare · doi:10.6084/m9.figshare.5643577

Ruminococcus gnavus bacteremia: Literature review and a case report associated with acute flare of ulcerative colitis in an immunocompromised patient

Carazo, J. M. D. V., García, D. V., Sánchez, E. S.-C., Rivas, J. A. P., Rodríguez, A. J. R., & Hernández‐Quero, J. (2023) · Anaerobe · doi:10.1016/j.anaerobe.2023.102762 · Cited by 10

Ruminococcus gnavus bacteraemia showing morphological diversity on Gram staining: a case report and literature review

Hioki, T., Kataoka, K., & Mutoh, Y. (2023) · Access Microbiology · doi:10.1099/acmi.0.000442 · Cited by 4