The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
RAB8, RAB10 and RILPL1 contribute to both LRRK2 kinase–mediated centrosomal cohesion and ciliogenesis deficits
Abstract
Mutations in the LRRK2 kinase are the most common cause of familial Parkinson’s disease, and variants increase risk for the sporadic form of the disease. LRRK2 phosphorylates multiple RAB GTPases including RAB8A and RAB10. Phosphorylated RAB10 is recruited to centrosome-localized RILPL1, which may interfere with ciliogenesis in a disease-relevant context. Our previous studies indicate that the centrosomal accumulation of phosphorylated RAB8A causes centrosomal cohesion deficits in dividing cells, including in peripheral patient-derived cells. Here, we show that both RAB8 and RAB10 contribute to the centrosomal cohesion deficits. Pathogenic LRRK2 causes the centrosomal accumulation not only of phosho-RAB8 but also of phospho-RAB10, and the effects on centrosomal cohesion are dependent on RAB8, RAB10 and RILPL1. Conversely, the pathogenic LRRK2-mediated ciliogenesis defects correlate with the centrosomal accumulation of both phospho-RAB8 and phospho-RAB10. LRRK2-mediated centrosomal cohesion and ciliogenesis alterations are observed in patient-derived peripheral cells, as well as in primary astrocytes from mutant LRRK2 mice, and are reverted upon LRRK2 kinase inhibition. These data suggest that the LRRK2-mediated centrosomal cohesion and ciliogenesis defects are distinct cellular readouts of the same underlying phospho-RAB8/RAB10/RILPL1 nexus and highlight the possibility that either centrosomal cohesion and/or ciliogenesis alterations may serve as cellular biomarkers for LRRK2-related PD.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Rab10 was identified as phosphorylated by LRRK2 combining two independent genetic and chemical phosphoproteomic screens and has been validated in subsequent studies.
“Rab10 specifically was identified as phosphorylated by LRRK2 combining two independent genetic and chemical phosphoproteomic screens and has been validated in subsequent studies [19, 28, 32, 34, 35, 41, 79].”
From Cellular and subcellular localization of Rab10 and phospho-T73 Rab10 in the mouse and human brain (2023) · cites this paper as [35]
In astrocytes, LRRK2 plays a role in ciliogenesis.
“In astrocytes, LRRK2 plays a role in ciliogenesis [15, 30, 35, 84].”
From Cellular and subcellular localization of Rab10 and phospho-T73 Rab10 in the mouse and human brain (2023) · cites this paper as [35]
Most endogenous LRRK2 is not present on the Golgi complex, and phospho-RAB8A/RAB10 is not trapped on the Golgi complex under normal conditions.
“This is consistent with findings indicating that most endogenous LRRK2 is not present on the Golgi complex, and that phospho-RAB8A/RAB10 is not trapped on the Golgi complex under normal conditions either [39,55,57].”
From Distinct Roles for RAB10 and RAB29 in Pathogenic LRRK2-Mediated Endolysosomal Trafficking Alterations (2020) · cites this paper as [39]
The Results section reports that phospho-RAB8/10 accumulates around centrosomes in cells expressing pathogenic LRRK2, but does not assess whether it is trapped on the Golgi under normal conditions. Searches for Golgi localization and endogenous LRRK2 did not find a passage establishing where most endogenous LRRK2 resides; the Golgi mentions found were an antibody in Methods and a reference title. Page numbers were unavailable in our copy. (LLM, conf=0.76)
Experimental — accuracy not yet measuredCargo adaptor proteins from the RILP family (RILPL1 and RILPL2) involved in ciliogenesis bind tightly with some phosphorylated Rabs including Rab10, but not with unphosphorylated Rabs.
“For example, cargo adaptor proteins from the RILP (Rab interacting lysosomal protein like) family (RILPL1 and RILPL2) involved in ciliogenesis, bind tightly with some of the phosphorylated Rabs including Rab10, but not with the unphosphorylated Rabs [35, 78].”
From Cellular and subcellular localization of Rab10 and phospho-T73 Rab10 in the mouse and human brain (2023) · cites this paper as [35]
RAB10 is widely expressed in peripheral tissues and brain, present in all cell types, and localized to a tubular perinuclear endocytic recycling compartment partially overlapping with RAB8A.
“It is widely expressed in peripheral tissues as well as in the brain, where it is present in all cell types [36], and localized to a tubular perinuclear endocytic recycling compartment partially overlapping with RAB8A [37,38,39,40].”
From Distinct Roles for RAB10 and RAB29 in Pathogenic LRRK2-Mediated Endolysosomal Trafficking Alterations (2020) · cites this paper as [39]
RAB8A and RAB10 colocalize to a perinuclear tubular endocytic recycling compartment.
“This is consistent with their colocalization to a perinuclear tubular endocytic recycling compartment [37,38,39,40]”
From Distinct Roles for RAB10 and RAB29 in Pathogenic LRRK2-Mediated Endolysosomal Trafficking Alterations (2020) · cites this paper as [39]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Patched1 Regulates Hedgehog Signaling at the Primary Cilium
Rohatgi, R., Milenkovic, L., & Scott, M. P. (2007) · Science · doi:10.1126/science.1139740 · Cited by 1,426
Nachury, M. V., Loktev, A. V., Zhang, Q., Westlake, C. J., Peränen, J., Merdes, A., Slusarski, D. C., Scheller, R. H., Bazan, J. F., Sheffield, V. C., et al. (2007) · Cell · doi:10.1016/j.cell.2007.03.053 · Cited by 1,384
Rab Proteins and the Compartmentalization of the Endosomal System
Wandinger-Ness, A., & Zerial, M. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a022616 · Cited by 586
di Domenico, A., Carola, G., Calatayud, C., Pons-Espinal, M., Muñoz, J. P., Richaud-Patin, Y., Fernandez-Carasa, I., Gut, M., Faella, A., Parameswaran, J., et al. (2019) · Stem Cell Reports · doi:10.1016/j.stemcr.2018.12.011 · Cited by 372
Dhekne, H. S., Yanatori, I., Gomez, R. C., Tonelli, F., Diez, F., Schüle, B., Steger, M., Alessi, D. R., & Pfeffer, S. R. (2018) · eLife · doi:10.7554/elife.40202 · Cited by 240
LRRK2 G2019S mutation attenuates microglial motility by inhibiting focal adhesion kinase
Choi, I., Kim, B., Byun, J.-W., Baik, S. H., Huh, Y. H., Kim, J.-H., Mook-Jung, I., Song, W. K., Shin, J.-H., Seo, H., et al. (2015) · Nature Communications · doi:10.1038/ncomms9255 · Cited by 112
Quantitative comparison of primary cilia marker expression and length in the mouse brain
Sipos, É., Komoly, S., & Ács, P. (2018) · Journal of Molecular Neuroscience · doi:10.1007/s12031-018-1036-z · Cited by 61
Signaling through the primary cilium affects glial cell survival under a stressed environment
Yoshimura, K., Kawate, T., & Takeda, S. (2011) · Glia · doi:10.1002/glia.21105 · Cited by 43
Flagged first, then by citations
Research works printed but not linked: 44
- Kluss, 2019, LRRK2 links genetic and sporadic Parkinson’s disease, Biochem. Soc. Trans., 10.1042/BST20180462 · DOI · Paper page
- Steger, 2017, Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis, Elife, 6, 10.7554/eLife.31012 · DOI · Paper page
- Steger, 2016, Phosphoproteomics reveals that Parkinson’s disease kinase LRRK2 regulates a subset of Rab GTPases, Elife, 5, 10.7554/eLife.12813 · DOI · Paper page
- Thirstrup, 2017, Selective LRRK2 kinase inhibition reduces phosphorylation of endogenous Rab 10 and Rab 12 in human peripheral mononuclear blood cells, Sci. Rep., 7, 10.1038/s41598-017-10501-z · DOI
- Jeong, 2018, Dysregulated phosphorylation of Rab GTPases by LRRK2 induces neurodegeneration, Mol. Neurodegener., 13, 8, 10.1186/s13024-018-0240-1 · DOI
- Lis, 2018, Development of phospho-specific Rab protein antibodies to monitor in vivo activity of the LRRK2 Parkinson’s disease kinase, Biochem. J., 475, 1, 10.1042/BCJ20170802 · DOI · Paper page
- Fan, 2018, Interrogating Parkinson’s disease LRRK2 kinase pathway activity by assessing Rab 10 phosphorylation in human neutrophils, Biochem. J., 475, 23, 10.1042/BCJ20170803 · DOI · Paper page
- Atashrazm, 2019, LRRK2-mediated Rab 10 phosphorylation in immune cells from Parkinson’s disease patients, Mov. Disord., 34, 406, 10.1002/mds.27601 · DOI · Paper page
- Pfeffer, 2017, Rab GTPases: master regulators that establish the secretory and endocytic pathways, Mol. Biol. Cell, 28, 712, 10.1091/mbc.e16-10-0737 · DOI
- Rivero-Ríos, 2019, The G2019S variant of leucine-rich repeat kinase 2 (LRRK2) alters endolysosomal trafficking by impairing the function of the GTPase RAB8A, J. Biol. Chem., 294, 4738, 10.1074/jbc.RA118.005008 · DOI · Paper page
- Madero-Pérez, 2018, Parkinson disease-associated mutations in LRRK2 cause centrosomal defects via Rab 8a phosphorylation, Mol. Neurodegener., 13
- Mac Leod, 2006, The familial parkinsonism gene LRRK2 regulates neurite process morphology, Neuron., 52, 587, 10.1016/j.neuron.2006.10.008 · DOI
- Parisiadou, 2009, Phosphorylation of ezrin/radixin/moesin proteins by LRRK2 promotes the rearrangement of actin cytoskeleton in neuronal morphogenesis, J. Neurosci., 29, 13971, 10.1523/JNEUROSCI.3799-09.2009 · DOI
- Sepulveda, 2013, Short- and long-term effects of LRRK2 on axon and dendrite growth, PLoS One, 8, 10.1371/journal.pone.0061986 · DOI
- Caesar, 2013, Leucine-rich repeat kinase 2 functionally interacts with microtubules and kinase-dependently modulates cell migration, Neurobiol. Dis., 54, 280, 10.1016/j.nbd.2012.12.019 · DOI
- Moehle, 2015, The G2019S LRRK2 mutation increases myeloid cell chemotactic responses and enhances LRRK2 binding to actin-regulatory proteins, Hum. Mol. Genet., 24, 4250, 10.1093/hmg/ddv157 · DOI
- Schaub, 2013, The Rilp-like proteins Rilpl 1 and Rilpl 2 regulate ciliary membrane content, Mol. Biol. Cell, 24, 453, 10.1091/mbc.e12-08-0598 · DOI
- Caspary, 2007, The graded response to Sonic hedgehog depends on cilia architecture, Dev. Cell, 12, 767, 10.1016/j.devcel.2007.03.004 · DOI
- Gonzalez-Reyes, 2012, Sonic hedgehog maintains cellular and neurochemical homeostasis in the adult nigrostriatal circuit, Neuron, 75, 306, 10.1016/j.neuron.2012.05.018 · DOI
- Gabe Lee, 2009, Structural mechanisms for regulation of membrane traffic by Rab GTPases, Traffic, 10, 1377, 10.1111/j.1600-0854.2009.00942.x · DOI
- Liu, 2018, LRRK2 phosphorylates membrane-bound Rabs and is activated by GTP-bound Rab 7L1 to promote recruitment to the trans-Golgi network, Hum. Mol. Genet., 27, 385, 10.1093/hmg/ddx410 · DOI · Paper page
- Armstrong, 1996, Identification of a novel member of the Rab 8 family from the rat basophilic leukaemia cell line, RBL.2H3, J. Cell Sci, 109, 1265, 10.1242/jcs.109.6.1265 · DOI
- Sato, 2014, Rab 8a and Rab 8b are essential for several apical transport pathways but insufficient for ciliogenesis, J. Cell Sci., 127, 422, 10.1242/jcs.136903 · DOI
- Yoshimura, 2007, Functional dissection of Rab GTPases involved in primary cilium formation, J. Cell Biol., 178, 363, 10.1083/jcb.200703047 · DOI
- Plotnikova, 2009, Primary cilia and the cell cycle, In Methods Cell Biol., 94, 137, 10.1016/S0091-679X(08)94007-3 · DOI · Paper page
- Yue, 2015, Progressive dopaminergic alterations and mitochondrial abnormalities in LRRK2 G2019S knock-in mice, Neurobiol. Dis., 78, 172, 10.1016/j.nbd.2015.02.031 · DOI · Paper page
- Booth, 2017, The role of astrocyte dysfunction in Parkinson’s disease pathogenesis, Trends Neurosci., 40, 358, 10.1016/j.tins.2017.04.001 · DOI · Paper page
- Knödler, 2010, Coordination of Rab 8 and Rab 11 in primary ciliogenesis, Proc. Natl. Acad. Sci. U. S. A., 107, 6346, 10.1073/pnas.1002401107 · DOI
- Westlake, 2011, Primary cilia membrane assembly is initiated by Rab 11 and transport protein particle II (TRAPPII) complex-dependent trafficking of Rabin 8 to the centrosome, Proc. Natl. Acad. Sci. U. S. A., 108, 2759, 10.1073/pnas.1018823108 · DOI
- Feng, 2012, A Rab 8 guanine nucleotide exchange factor-effector interaction network regulates primary ciliogenesis, J. Biol. Chem., 287, 15602, 10.1074/jbc.M111.333245 · DOI
- Lu, 2015, Early steps in primary cilium assembly require EHD1/EHD3-dependent ciliary vesicle formation, Nat. Cell Biol., 17, 228, 10.1038/ncb3109 · DOI · Paper page
- Chua, 2018, Rab 10-a traffic controller in multiple cellular pathways and locations, J. Cell. Physiol., 233, 6483, 10.1002/jcp.26503 · DOI · Paper page
- Royle, 2011, Mitotic moonlighting functions for membrane trafficking proteins, Traffic, 12, 791, 10.1111/j.1600-0854.2011.01184.x · DOI
- Joe, 2018, Astrocytes, microglia, and Parkinson’s disease, Exp. Neurobiol., 27, 77, 10.5607/en.2018.27.2.77 · DOI
- Prosser, 2015, Centrin 2 regulates CP110 removal in primary cilium formation, J. Cell Biol., 208, 693, 10.1083/jcb.201411070 · DOI
- Chen, 2002, Inhibition of hedgehog signaling by direct binding of cyclopamine to smoothened, Genes Dev., 16, 2743, 10.1101/gad.1025302 · DOI
- Blanca Ramírez, 2017, GTP binding regulates cellular localization of Parkinson’s disease-associated LRRK2, Hum. Mol. Genet., 26, 10.1093/hmg/ddx161 · DOI
- Gómez-Suaga, 2014, LRRK2 delays degradative receptor trafficking by impeding late endosomal budding through decreasing Rab 7 activity, Hum. Mol. Genet., 23, 6779, 10.1093/hmg/ddu395 · DOI · Paper page
- Reyniers, 2014, Differential protein-protein interactions of LRRK1 and LRRK2 indicate roles in distinct cellular signaling pathways, J. Neurochem., 131, 239, 10.1111/jnc.12798 · DOI
- Vancraenenbroeck, 2014, In silico, in vitro and cellular analysis with a kinome-wide inhibitor panel correlates cellular LRRK2 dephosphorylation to inhibitor activity on LRRK2, Front. Mol. Neurosci., 7, 51, 10.3389/fnmol.2014.00051 · DOI
- Ito, 2016, Phos-tag analysis of Rab 10 phosphorylation by LRRK2: a powerful assay for assessing kinase function and inhibitors, Biochem. J., 473, 2671, 10.1042/BCJ20160557 · DOI · Paper page
- Lobbestael, 2016, Pharmacological LRRK2 kinase inhibition induces LRRK2 protein destabilization and proteasomal degradation, Sci. Rep., 6, 10.1038/srep33897 · DOI
- McGlashan, 2010, Mechanical loading modulates chondrocyte primary cilia incidence and length, Cell Biol. Int., 34, 441, 10.1042/CBI20090094 · DOI
- Dummer, 2016, Measuring the primary cilium length: improved method for unbiased high-throughput analysis, Cilia, 5, 7, 10.1186/s13630-016-0028-2 · DOI · Paper page
Cited by
Sorted by citations
Khan, S. S., Sobu, Y., Dhekne, H. S., Tonelli, F., Berndsen, K., Alessi, D. R., & Pfeffer, S. R. (2021) · eLife · doi:10.7554/elife.67900 · Cited by 93
Khan, S. S., Jaimon, E., Lin, Y.-E., Nikoloff, J., Tonelli, F., Alessi, D. R., & Pfeffer, S. R. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2402206121 · Cited by 61
Rivero-Ríos, P., Romo-Lozano, M., Fernández, B., Fdez, E., & Hilfiker, S. (2020) · Cells · doi:10.3390/cells9071719 · Cited by 38
Self-citationCellular and subcellular localization of Rab10 and phospho-T73 Rab10 in the mouse and human brain
Singh, V., Menard, M. A., Serrano, G. E., Beach, T. G., Zhao, H. T., Riley-DiPaolo, A., Subrahmanian, N., LaVoie, M. J., & Volpicelli-Daley, L. A. (2023) · Acta Neuropathologica Communications · doi:10.1186/s40478-023-01704-9 · Cited by 9
Metadata
- Authors
- Lara Ordónez, A. J., Fernández, B., Fdez, E., Romo-Lozano, M., Madero-Pérez, J., Lobbestael, E., Baekelandt, V., Aiastui, A., López de Munaín, A., Melrose, H. L., Civiero, L., & Hilfiker, S.
- Venue
- Human Molecular Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-08-20
- Volume
- 28
- Issue
- 21
- Pages
- 3552-3568
- ISSN
- 0964-6906
- 1460-2083
- PMC
- PMC6927464
- Cited by
- 103
- References
- 8
- Language
- en
- Funders
- European Regional Development Fund
- Spanish Ministry of Economy and Competitiveness (SAF2017-89402-R)
- Spanish Ministry of Education, Culture and Sport (FPU15/05233)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review