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Investigating Population History Using Temporal Genetic Differentiation

Skoglund, Pontus, Sjödin, Per, Skoglund, Tobias, Lascoux, Martin, Jakobsson, Mattias·2014·Molecular Biology and Evolution

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Research works printed but not linked: 61

  1. Anderson, 2005, Serial SimCoal: a population genetics model for data from multiple populations and points in time, Bioinformatics, 21, 1733, 10.1093/bioinformatics/bti154 · DOI
  2. Anderson, 2000, Monte Carlo evaluation of the likelihood for N(e) from temporally spaced samples, Genetics, 156, 2109, 10.1093/genetics/156.4.2109 · DOI
  3. Beaumont, 2003, Estimation of population growth or decline in genetically monitored populations, Genetics, 164, 1139, 10.1093/genetics/164.3.1139 · DOI
  4. Beaumont, 2002, Approximate Bayesian computation in population genetics, Genetics, 162, 2025, 10.1093/genetics/162.4.2025 · DOI · Paper page
  5. Berthier, 2002, Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach, Genetics, 160, 741, 10.1093/genetics/160.2.741 · DOI
  6. Briggs, 2007, Patterns of damage in genomic DNA sequences from a Neandertal, Proc Natl Acad Sci U S A., 104, 14616, 10.1073/pnas.0704665104 · DOI · Paper page
  7. Briggs, 2010, Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA, Nucleic Acids Res., 38, e87, 10.1093/nar/gkp1163 · DOI · Paper page
  8. Castroviejo-Fisher, 2011, Vanishing native American dog lineages, BMC Evol Biol., 11, 73, 10.1186/1471-2148-11-73 · DOI
  9. Chan, 2006, Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA, PLoS Genet., 2, 451, 10.1371/journal.pgen.0020059 · DOI
  10. Chikhi, 2010, The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes, Genetics, 186, 983, 10.1534/genetics.110.118661 · DOI
  11. DeGiorgio, 2013, Geographic sampling scheme as a determinant of the major axis of genetic variation in principal components analysis, Mol Biol Evol., 30, 480, 10.1093/molbev/mss233 · DOI
  12. Depaulis, 2009, Using classical population genetics tools with heterochroneous data: time matters!, PLoS One, 4, e5541, 10.1371/journal.pone.0005541 · DOI
  13. Drummond, 2007, BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evol Biol., 7, 214, 10.1186/1471-2148-7-214 · DOI
  14. Drummond, 2005, Bayesian coalescent inference of past population dynamics from molecular sequences, Mol Biol Evol., 22, 1185, 10.1093/molbev/msi103 · DOI
  15. Durand, 2011, Testing for ancient admixture between closely related populations, Mol Biol Evol., 28, 2239, 10.1093/molbev/msr048 · DOI · Paper page
  16. Engelhardt, 2010, Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis, PLoS Genet., 6, e1001117, 10.1371/journal.pgen.1001117 · DOI · Paper page
  17. Excoffier, 2011, Fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios, Bioinformatics, 27, 1332, 10.1093/bioinformatics/btr124 · DOI
  18. Green, 2010, A draft sequence of the neandertal genome, Science, 328, 710, 10.1126/science.1188021 · DOI · Paper page
  19. Haak, 2005, Ancient DNA from the first European farmers in 7500-year-old Neolithic sites, Science, 310, 1016, 10.1126/science.1118725 · DOI
  20. Higuchi, 1984, DNA sequence from the quagga, an extinct member of the horse family, Nature, 312, 282, 10.1038/312282a0 · DOI
  21. Ho, 2011, Skyline-plot methods for estimating demographic history from nucleotide sequences, Mol Ecol Resour., 11, 423, 10.1111/j.1755-0998.2011.02988.x · DOI
  22. Hudson, 2002, Generating samples under a Wright–Fisher neutral model of genetic variation, Bioinformatics, 18, 337, 10.1093/bioinformatics/18.2.337 · DOI
  23. Jakobsson, 2009, COMPASS: a program for generating serial samples under an infinite sites model, Bioinformatics, 25, 2845, 10.1093/bioinformatics/btp534 · DOI
  24. Kaj, 2001, Coalescent theory for seed bank models, J Appl Probab., 38, 285, 10.1017/S0021900200019860 · DOI
  25. Kingman, 1982, The coalescent, Stochastic Process Appl., 13, 235, 10.1016/0304-4149(82)90011-4 · DOI
  26. Krause, 2010, A complete mtDNA genome of an early modern human from Kostenki, Russia, Curr Biol., 20, 231, 10.1016/j.cub.2009.11.068 · DOI · Paper page
  27. Krimbas, 1971, The genetics of Dacus oleae. V. Changes of esterase polymorphism in a natural population following insecticide control-selection or drift?, Evolution, 25, 454, 10.2307/2407343 · DOI
  28. McVean, 2009, A genealogical interpretation of principal components analysis, PLoS Genet., 5, e1000686, 10.1371/journal.pgen.1000686 · DOI · Paper page
  29. Mourier, 2012, Statistical guidelines for detecting past population shifts using ancient DNA, Mol Biol Evol., 29, 2241, 10.1093/molbev/mss094 · DOI
  30. Navascues, 2010, Combining contemporary and ancient DNA in population genetic and phylogeographical studies, Mol Ecol Resour., 10, 760, 10.1111/j.1755-0998.2010.02895.x · DOI
  31. Nei, 1973, Analysis of gene diversity in subdivided populations, Proc Natl Acad Sci U S A., 70, 3321, 10.1073/pnas.70.12.3321 · DOI · Paper page
  32. Nielsen, 2001, Distinguishing migration from isolation: a Markov chain Monte Carlo approach, Genetics, 158, 885, 10.1093/genetics/158.2.885 · DOI
  33. Nordborg, 1998, On the probability of Neanderthal ancestry, Am J Hum Genet., 63, 1237, 10.1086/302052 · DOI
  34. Novembre, 2008, Interpreting principal component analyses of spatial population genetic variation, Nat Genet., 40, 646, 10.1038/ng.139 · DOI
  35. Nyström, 2010, Temporal genetic change in the last remaining population of woolly mammoth, Proc R Soc B Biol Sci., 277, 2331, 10.1098/rspb.2010.0301 · DOI
  36. Nyström, 2012, Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation, Mol Ecol., 21, 3391, 10.1111/j.1365-294X.2012.05525.x · DOI
  37. Pääbo, 1985, Molecular cloning of ancient Egyptian mummy DNA, Nature, 314, 644, 10.1038/314644a0 · DOI
  38. Patterson, 2006, Population structure and eigenanalysis, PLoS Genet., 2, e190, 10.1371/journal.pgen.0020190 · DOI · Paper page
  39. Pritchard, 1999, Population growth of human Y chromosomes: a study of Y chromosome microsatellites, Mol Biol Evol., 16, 1791, 10.1093/oxfordjournals.molbev.a026091 · DOI
  40. Ramakrishnan, 2005, Detecting past population bottlenecks using temporal genetic data, Mol Ecol., 14, 2915, 10.1111/j.1365-294X.2005.02586.x · DOI
  41. Ramakrishnan, 2009, Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies, Mol Ecol., 18, 1310, 10.1111/j.1365-294X.2009.04092.x · DOI
  42. Rosenberg, 2005, Clines, clusters, and the effect of study design on the inference of human population structure, PLoS Genet., 1, e70, 10.1371/journal.pgen.0010070 · DOI
  43. Sánchez-Quinto, 2012, Genomic affinities of two 7,000-year-old Iberian hunter-gatherers, Curr Biol., 22, 1494, 10.1016/j.cub.2012.06.005 · DOI · Paper page
  44. Schlebusch, 2012, Genomic variation in seven Khoe-San groups reveals adaptation and complex African history, Science, 338, 374, 10.1126/science.1227721 · DOI
  45. Serre, 2004, No evidence of Neandertal mtDNA contribution to early modern humans, PLoS Biol., 2, e57, 10.1371/journal.pbio.0020057 · DOI
  46. Serre, 2004, Evidence for gradients of human genetic diversity within and among continents, Genome Res., 14, 1679, 10.1101/gr.2529604 · DOI · Paper page
  47. Shapiro, 2014, A Paleogenomic perspective on evolution and gene function: new insights from ancient DNA, Science, 343, 1236573, 10.1126/science.1236573 · DOI · Paper page
  48. Sheehan, 2013, Estimating variable effective population sizes from multiple genomes: a sequentially Markov conditional sampling distribution approach, Genetics, 194, 647, 10.1534/genetics.112.149096 · DOI
  49. Sjödin, 2014, Assessing the maximum contribution from ancient populations, Mol Biol Evol., 31, 1248, 10.1093/molbev/msu059 · DOI
  50. Skoglund, 2011, Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves, Mol Biol Evol., 28, 1505, 10.1093/molbev/msq342 · DOI
  51. Skoglund, 2012, Origins and genetic legacy of Neolithic farmers and hunter–gatherers in Europe, Science, 336, 466, 10.1126/science.1216304 · DOI · Paper page
  52. Slatkin, 1991, Inbreeding coefficients and coalescence times, Genet Res., 58, 167, 10.1017/S0016672300029827 · DOI
  53. Tavare, 1997, Inferring coalescence times from DNA sequence data, Genetics, 145, 505, 10.1093/genetics/145.2.505 · DOI
  54. Vartanyan, 1993, Holocene dwarf mammoths from Wrangel Island in the Siberian Arctic, Nature, 362, 337, 10.1038/362337a0 · DOI
  55. Voight, 2005, Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes, Proc Natl Acad Sci U S A., 102, 18508, 10.1073/pnas.0507325102 · DOI · Paper page
  56. Wang, 2001, A pseudo-likelihood method for estimating effective population size from temporally spaced samples, Genet Res., 78, 243, 10.1017/S0016672301005286 · DOI
  57. Waples, 1989, Temporal variation in allele frequencies: testing the right hypothesis, Evolution, 43, 1236, 10.2307/2409359 · DOI
  58. Weir, 1996, Genetic data analysis II
  59. Wright, 1940, Breeding structure of populations in relation to speciation, Am Nat., 74, 232, 10.1086/280891 · DOI
  60. Wright, 1949, Population structure in evolution, Proc Am Philos Soc., 93, 471
  61. Wright, 1951, The genetical structure of populations, Ann Eugen., 15, 323, 10.1111/j.1469-1809.1949.tb02451.x · DOI

Cited by

Sorted by citations

  • Ancient DNA analysis

    Orlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411

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Metadata

Authors
Skoglund, P., Sjödin, P., Skoglund, T., Lascoux, M., & Jakobsson, M.
Venue
Molecular Biology and Evolution
Published
2014-06-17
Volume
31
Issue
9
Pages
2516-2527
ISSN
  • 1537-1719
  • 0737-4038
Cited by
60
References
14
Language
en

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