AUGUSTUS: ab initio prediction of alternative transcripts

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AUGUSTUS: a web server for gene finding in eukaryotes

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Fast and sensitive multiple alignment of large genomic sequences

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SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov ModelPreprint

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Using Multiple Alignments to Improve Gene Prediction

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Computational Gene Prediction Using Multiple Sources of EvidencePreprint

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The conserved exon method for gene finding.

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gff2ps: visualizing genomic annotations

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EGASP: collaboration through competition to find human genes

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AGenDA: gene prediction by comparative sequence analysis.

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Using Multiple Alignments to Improve Gene Prediction

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Gene Prediction with a Hidden Markov Model

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A survey of best practices for RNA-seq data analysis

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Assessment of transcript reconstruction methods for RNA-seq

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Function of alternative splicing

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Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

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The tiger genome and comparative analysis with lion and snow leopard genomes

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No evidence for extensive horizontal gene transfer in the genome of the tardigrade <i>Hypsibius dujardini</i>

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Comparative genomics of emerging pathogens in the Candida glabrata clade.

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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

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Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains

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Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes

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The goose genome sequence leads to insights into the evolution of waterfowl and susceptibility to fatty liver

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Natural hybridization reveals incompatible alleles that cause melanoma in swordtail fish

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Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans

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Reference genome of wild goat (Capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

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Evolutionary analysis of the most polymorphic gene family in falciparum malaria

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Subunit NDUFV3 is present in two distinct isoforms in mammalian complex I

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Hybrid genome assembly and annotation of Danionella translucida

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The vast majority of somatic mutations in plants are layer-specific

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An improved feature extraction algorithm for insider threat using hidden Markov model on user behavior detection

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Stable hypermutators revealed by the genomic landscape of genes involved in genome stability among yeast species

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Genomic and genetic insights into speciation and pigment pattern diversification in <i>Danio</i> fishes

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Metabolic versatility of the Wickerhamiella/Starmerella yeast clade: from sugar utilization to lipid metabolism

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Alternative Splice Variants Encoding Unstable Protein Domains Exist in the Human Brain

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EST comparison indicates 38% of human mRNAs contain possible alternative splice forms

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DETECTION OF NOVEL SPLICE FORMS IN HUMAN AND MOUSE USING CROSS-SPECIES APPROACH

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TAPAS: tools to assist the targeted protein quantification of human alternative splice variants

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Isolation, Expression and Analysis of Splice Variants of a Human Ca2+/Calmodulin-Stimulated Phosphodiesterase (PDE1A)

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