Cited by 29

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

Hypertension-associated mitochondrial DNA 4401A>G mutation caused the aberrant processing of tRNAMet, all 8 tRNAs and ND6 mRNA in the light-strand transcript

Zhao, Xiaoxu, Cui, Limei, Xiao, Yun, Mao, Qin, Aishanjiang, Maerhaba, Kong, Wanzhong, Liu, Yuqi, Chen, Hong, Hong, Fang, Jia, Zidong, Wang, Meng, Jiang, Pingping, Guan, Min-Xin·2019·Nucleic Acids Research

Abstract

Mitochondrial tRNA processing defects were associated with human diseases but their pathophysiology remains elusively. The hypertension-associated m.4401A>G mutation resided at a spacer between mitochondrial tRNAMet and tRNAGln genes. An in vitro processing experiment revealed that the m.4401A>G mutation caused 59% and 69% decreases in the 5′ end processing efficiency of tRNAGln and tRNAMet precursors, catalyzed by RNase P, respectively. Using human umbilical vein endothelial cells-derived cybrids, we demonstrated that the m.4401A>G mutation caused the decreases of all 8 tRNAs and ND6 and increases of longer and uncleaved precursors from the Light-strand transcript. Conversely, the m.4401A>G mutation yielded the reduced levels of tRNAMet level but did not change the levels of other 13 tRNAs, 12 mRNAs including ND1, 12S rRNA and 16S rRNA from the Heavy-strand transcript. These implicated the asymmetrical processing mechanisms of H-strand and L-strand polycistronic transcripts. The tRNA processing defects play the determined roles in the impairing mitochondrial translation, respiratory deficiency, diminishing membrane potential, increasing production of reactive oxygen species and altering autophagy. Furthermore, the m.4401A>G mutation altered the angiogenesis, evidenced by aberrant wound regeneration and weaken tube formation in mutant cybrids. Our findings provide new insights into the pathophysiology of hypertension arising from mitochondrial tRNA processing defects.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/nar/gkz742

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The AAV insert capacity limitation is more evident when the mutation affects mtDNA transcription or translation, such as mutations in the origin of replication for the light and heavy strands or in any of the tRNA genes that impact global protein translation in the mitochondrial matrix.

    “This is more evident when the mutation affects mtDNA transcription or translation, such as mutations in the origin of replication for the light and heavy strands [174], or in any of the tRNA genes that impact global protein translation in the mitochondrial matrix [175].”

    From The Mitochondrial Genome in Aging and Disease and the Future of Mitochondrial Therapeutics (2022) · cites this paper as [175]

    Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 85

  1. Levinger, 2004, Mitochondrial tRNA 3′ end metabolism and human disease, Nucleic Acids Res., 32, 5430, 10.1093/nar/gkh884 · DOI
  2. Suzuki, 2011, Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases, Annu. Rev. Genet., 45, 299, 10.1146/annurev-genet-110410-132531 · DOI
  3. Van Haute, 2015, Mitochondrial transcript maturation and its disorders, Inherit. Metab. Dis., 38, 655, 10.1007/s10545-015-9859-z · DOI
  4. Boczonadi, 2018, Mitochondrial DNA transcription and translation: clinical syndromes, Essays Biochem., 62, 321, 10.1042/EBC20170103 · DOI
  5. Guan, 1998, The deafness-associated mitochondrial DNA mutation at position 7445, which affects tRNASer(UCN) precursor processing, has long-range effects on NADH dehydrogenase subunit ND6 gene expression, Mol. Cell Biol., 18, 5868, 10.1128/MCB.18.10.5868 · DOI
  6. Xue, 2016, Mitochondrial tRNA mutations in 2070 Chinese Han subjects with hypertension, Mitochondrion, 30, 208, 10.1016/j.mito.2016.08.008 · DOI
  7. Ojala, 1981, tRNA punctuation model of RNA processing in human mitochondria, Nature, 290, 470, 10.1038/290470a0 · DOI
  8. Montoya, 1983, The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcription units, Cell, 34, 151, 10.1016/0092-8674(83)90145-9 · DOI
  9. Andrews, 1999, Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA, Nat. Genet., 23, 147, 10.1038/13779 · DOI · Paper page
  10. Wallace, 2005, A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine, Annu. Rev. Genet., 39, 359, 10.1146/annurev.genet.39.110304.095751 · DOI · Paper page
  11. Mercer, 2011, The human mitochondrial transcriptome, Cell, 146, 645, 10.1016/j.cell.2011.06.051 · DOI · Paper page
  12. Fisher, 1987, Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements, Cell, 50, 247, 10.1016/0092-8674(87)90220-0 · DOI
  13. Litonin, 2010, Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro, J. Biol. Chem., 285, 18129, 10.1074/jbc.C110.128918 · DOI
  14. Sanchez, 2011, RNA processing in human mitochondria, Cell Cycle, 10, 2904, 10.4161/cc.10.17.17060 · DOI
  15. Holzmann, 2008, RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme, Cell, 135, 462, 10.1016/j.cell.2008.09.013 · DOI
  16. Reinhard, 2017, The MRPP1/MRPP2 complex is a tRNA-maturation platform in human mitochondria, Nucleic Acids Res., 45, 12469, 10.1093/nar/gkx902 · DOI
  17. Brzezniak, 2011, Involvement of human ELAC2 gene product in 3′ end processing of mitochondrial tRNAs, RNA Biol., 8, 616, 10.4161/rna.8.4.15393 · DOI
  18. Metodiev, 2016, Recessive mutations in TRMT10C cause defects in mitochondrial RNA processing and multiple respiratory chain deficiencies, Am. J. Hum. Genet., 98, 993, 10.1016/j.ajhg.2016.03.010 · DOI
  19. Oerum, 2017, Novel patient missense mutations in the HSD17B10 gene affect dehydrogenase and mitochondrial tRNA modification functions of the encoded protein, Biochim. Biophys. Acta. Mol. Basis Dis., 1863, 3294, 10.1016/j.bbadis.2017.09.002 · DOI
  20. Falk, 2016, A novel HSD17B10 mutation impairing the activities of the mitochondrial RNase P complex causes X-linked intractable epilepsy and neurodevelopmental regression, RNA Biol., 13, 477, 10.1080/15476286.2016.1159381 · DOI
  21. Haack, 2013, ELAC2 mutations cause a mitochondrial RNA processing defect associated with hypertrophic cardiomyopathy, Am. J. Hum. Genet., 93, 211, 10.1016/j.ajhg.2013.06.006 · DOI
  22. Shinwari, 2017, The phenotype and outcome of infantile cardiomyopathy caused by a homozygous ELAC2 mutation, Cardiology, 137, 188, 10.1159/000465516 · DOI
  23. Yan, 2006, Naturally occurring mutations in human mitochondrial pre-tRNASer(UCN) can affect the transfer ribonuclease Z cleavage site, processing kinetics, and substrate secondary structure, J. Biol. Chem., 281, 3926, 10.1074/jbc.M509822200 · DOI
  24. Levinger, 2003, Pathology-related substitutions in human mitochondrial tRNAIle reduce precursor 3′ end processing efficiency in vitro, Nucleic Acids Res., 31, 1904, 10.1093/nar/gkg282 · DOI
  25. Levinger, 2012, Pathogenesis-related mutations in the T-loops of human mitochondrial tRNAs affect 3′ end processing and tRNA structure, RNA Biol., 9, 283, 10.4161/rna.19025 · DOI
  26. Bindoff, 1993, Abnormal RNA processing associated with a novel tRNA mutation in mitochondrial DNA: a potential disease mechanism, J. Biol. Chem., 268, 19559, 10.1016/S0021-9258(19)36552-4 · DOI
  27. Li, 2010, Human mitochondrial leucyl-tRNA synthetase corrects mitochondrial dysfunctions due to the tRNALeu(UUR) A3243G mutation, associated with mitochondrial encephalomyopathy, lactic acidosis, and stroke-like symptoms and diabetes, Mol. Cell Biol., 30, 2147, 10.1128/MCB.01614-09 · DOI
  28. Wang, 2011, Maternally inherited essential hypertension is associated with the novel 4263A>G mutation in the mitochondrial tRNAIle gene in a large Han Chinese family, Circ. Res., 108, 862, 10.1161/CIRCRESAHA.110.231811 · DOI
  29. Jiang, 2016, A hypertension-associated tRNAAla mutation alters tRNA metabolism and mitochondrial function, Mol. Cell Biol., 36, 1920, 10.1128/MCB.00199-16 · DOI
  30. Li, 2009, Failures in mitochondrial tRNAMet and tRNAGln metabolism caused by the novel 4401A>G mutation are involved in essential hypertension in a Han Chinese Family, Hypertension, 54, 329, 10.1161/HYPERTENSIONAHA.109.129270 · DOI
  31. Florentz, 2003, Human mitochondrial tRNAs in health and disease, Cell Mol. Life Sci., 60, 1356, 10.1007/s00018-003-2343-1 · DOI
  32. Park, 2006, Human umbilical vein endothelial cells and human dermal microvascular endothelial cells offer new insights into the relationship between lipid metabolism and angiogenesis, Stem Cell Rev., 2, 93, 10.1007/s12015-006-0015-x · DOI
  33. Jia, 2019, A coronary artery disease-associated tRNAThr mutation altered mitochondrial function, apoptosis and angiogenesis, Nucleic Acids Res., 47, 2056, 10.1093/nar/gky1241 · DOI
  34. Trounce, 1996, Production of transmitochondrial mouse cell lines by cybrid rescue of rhodamine-6G pre-treated L-cells, Somat. Cell Mol. Genet., 22, 81, 10.1007/BF02374379 · DOI
  35. King, 1989, Human cells lacking mtDNA: repopulation with exogenous m itochondria by complementation, Science, 246, 500, 10.1126/science.2814477 · DOI
  36. Zhang, 2018, Leber's hereditary optic neuropathy (LHON)-associated ND5 12338T > C mutation altered the assembly and function of complex I, apoptosis and mitophagy, Hum. Mol. Genet., 27, 1999, 10.1093/hmg/ddy107 · DOI
  37. Rieder, 1998, Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome, Nucleic Acids Res., 26, 967, 10.1093/nar/26.4.967 · DOI
  38. Yokobori, 1995, Transfer RNA editing in land snail mitochondria, Proc. Natl. Acad. Sci. U.S.A., 92, 10432, 10.1073/pnas.92.22.10432 · DOI
  39. King, 1993, Post-transcriptional regulation of the steady-state levels of mitochondrial tRNAs in HeLa cells, J. Biol. Chem., 268, 10228, 10.1016/S0021-9258(18)82194-9 · DOI
  40. Zhou, 2018, A hypertension-associated mitochondrial DNA mutation introduces an m1G37 modification into tRNAMet, altering its structure and function, J. Biol. Chem., 293, 1425, 10.1074/jbc.RA117.000317 · DOI
  41. Zhou, 2017, A hypertension-associated mitochondrial DNA mutation alters the tertiary interaction and function of tRNALeu(UUR), J. Biol. Chem., 292, 13934, 10.1074/jbc.M117.787028 · DOI
  42. Wang, 2016, A deafness-associated tRNAAsp mutation alters the m1G37 modification, aminoacylation and stability of tRNAAsp and mitochondrial function, Nucleic Acids Res., 44, 10974, 10.1093/nar/gkw726 · DOI
  43. Gong, 2014, A deafness-associated tRNAHis mutation alters the mitochondrial function, ROS production and membrane potential, Nucleic Acids Res., 42, 8039, 10.1093/nar/gku466 · DOI
  44. Jiang, 2016, The exome sequencing identified the mutation in YARS2 encoding the mitochondrial tyrosyl-tRNA synthetase as a nuclear modifier for the phenotypic manifestation of Leber's hereditary optic neuropathy-associated mitochondrial DNA mutation, Hum. Mol. Genet., 25, 584, 10.1093/hmg/ddv498 · DOI
  45. Li, 2004, Biochemical characterization of the mitochondrial tRNASer(UCN) T7511C mutation associated with nonsyndromic deafness, Nucleic Acids Res., 32, 867, 10.1093/nar/gkh226 · DOI
  46. Dranka, 2011, Assessing bioenergetic function in response to oxidative stress by metabolic profiling, Free Radic. Biol. Med., 51, 1621, 10.1016/j.freeradbiomed.2011.08.005 · DOI · Paper page
  47. Reers, 1995, Mitochondrial membrane potential monitored by JC-1 dye, Methods Enzymol., 260, 406, 10.1016/0076-6879(95)60154-6 · DOI
  48. Mahfouz, 2009, Evaluation of chemiluminescence and flow cytometry as tools in assessing production of hydrogen peroxide and superoxide anion in human spermatozoa, Fertil. Steril., 92, 819, 10.1016/j.fertnstert.2008.05.087 · DOI
  49. Chan, 2012, A novel image-based cytometry method for autophagy detection in living cells, Autophagy, 8, 1371, 10.4161/auto.21028 · DOI
  50. Esteban-Martinez, 2017, cytofluorometric assessment of mitophagic flux in mammalian cells and tissues, Methods Enzymol., 588, 209, 10.1016/bs.mie.2016.09.081 · DOI · Paper page
  51. Jonkman, 2014, An introduction to the wound healing assay using live-cell microscopy, Cell Adh. Migr., 8, 440, 10.4161/cam.36224 · DOI
  52. DeCicco-Skinner, 2014, Endothelial cell tube formation assay for the in vitro study of angiogenesis, J. Vis. Exp., 91, e51312
  53. Francescone, 2011, A Matrigel-based tube formation assay to assess the vasculogenic activity of tumor cells, J. Vis. Exp., 55, e3040
  54. Bhat, 1985, Expression of the cytochrome b-URF6-URF5 region of the mouse mitochondrial genome, Biochemistry, 24, 5818, 10.1021/bi00342a020 · DOI
  55. Tullo, 1994, Transcription of rat mitochondrial NADH-dehydrogenase subunits. Presence of antisense and precursor RNA species, FEBS Lett., 354, 30, 10.1016/0014-5793(94)01080-3 · DOI
  56. Ji, 2019, Contribution of mitochondrial ND1 3394T>C mutation to the phenotypic manifestation of Leber's hereditary optic neuropathy, Hum. Mol. Genet., 28, 1515, 10.1093/hmg/ddy450 · DOI
  57. Scheffler, 2015, Mitochondrial disease associated with complex I (NADH-CoQ oxidoreductase) deficiency, J. Inherit. Metab. Dis., 38, 405, 10.1007/s10545-014-9768-6 · DOI
  58. Murphy, 2016, Mitochondrial function, biology, and role in disease: a scientific statement from the American Heart Association, Circ. Res., 118, 1960, 10.1161/RES.0000000000000104 · DOI
  59. Sena, 2012, Physiological roles of mitochondrial reactive oxygen species, Mol. Cell, 48, 158, 10.1016/j.molcel.2012.09.025 · DOI · Paper page
  60. Hamacher-Brady, 2016, Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy, Cell Mol. Life Sci., 73, 775, 10.1007/s00018-015-2087-8 · DOI
  61. Korolchuk, 2009, A novel link between autophagy and the ubiquitin-proteasome system, Autophagy, 5, 862, 10.4161/auto.8840 · DOI
  62. Zhu, 2014, Monitoring mitophagy in mammalian cells, Methods Enzymol., 547, 39, 10.1016/B978-0-12-801415-8.00003-5 · DOI
  63. Guo, 2010, Factors affecting wound healing, J. Dent. Res, 89, 219, 10.1177/0022034509359125 · DOI · Paper page
  64. Boczonadi, 2018, Mitochondrial DNA transcription and translation: clinical syndromes, Essays Biochem., 62, 321, 10.1042/EBC20170103 · DOI
  65. Meng, 2017, Biochemical evidence for a nuclear modifier allele (A10S) in TRMU (Methylaminomethyl-2-thiouridylate-methyltransferase) related to mitochondrial tRNA modification in the phenotypic manifestation of deafness-associated 12S rRNA mutation, J. Biol. Chem., 292, 2881, 10.1074/jbc.M116.749374 · DOI
  66. Guan, 1996, Biochemical evidence for nuclear gene involvement in phenotype of non-syndromic deafness associated with mitochondrial 12S rRNA mutation, Hum. Mol. Genet., 5, 963, 10.1093/hmg/5.7.963 · DOI
  67. Zhang, 2018, Deletion of Mtu1 (Trmu) in zebrafish revealed the essential role of tRNA modification in mitochondrial biogenesis and hearing function, Nucleic Acids Res., 46, 10930
  68. Dogan, 2014, Tissue-specific loss of DARS2 activates stress responses independently of respiratory chain deficiency in the heart, Cell Metab., 19, 458, 10.1016/j.cmet.2014.02.004 · DOI
  69. Chen, 2019, Deletion of Gtpbp3 in zebrafish revealed the hypertrophic cardiomyopathy manifested by aberrant mitochondrial tRNA metabolism, Nucleic Acids Res., 47, 5341, 10.1093/nar/gkz218 · DOI
  70. Neubauer, 2007, The failing heart: an engine out of fuel, N. Engl. J. Med., 356, 1140, 10.1056/NEJMra063052 · DOI
  71. Addabbo, 2009, Mitochondria and reactive oxygen species, Hypertension, 53, 885, 10.1161/HYPERTENSIONAHA.109.130054 · DOI
  72. Zhang, 2007, Mitochondrial reactive oxygen species-mediated signaling in endothelial cells, Am. J. Physiol. Heart. Circ. Physiol., 292, H2023, 10.1152/ajpheart.01283.2006 · DOI
  73. Kornfeld, 2015, Mitochondrial reactive oxygen species at the heart of the matter: new therapeutic approaches for cardiovascular diseases, Circ. Res., 116, 1783, 10.1161/CIRCRESAHA.116.305432 · DOI
  74. Marcu, 2017, Mitochondria and angiogenesis, Adv. Exp. Med. Biol., 982, 371, 10.1007/978-3-319-55330-6_21 · DOI
  75. Hayashi, 2015, Oxidative stress in inherited mitochondrial diseases, Free Radic. Biol. Med., 88A, 10, 10.1016/j.freeradbiomed.2015.05.039 · DOI
  76. Schieber, 2014, ROS function in redox signaling and oxidative stress, Curr. Biol., 24, R453, 10.1016/j.cub.2014.03.034 · DOI · Paper page
  77. Sena, 2012, Physiological roles of mitochondrial reactive oxygen species, Mol. Cell, 48, 158, 10.1016/j.molcel.2012.09.025 · DOI · Paper page
  78. Murphy, 2016, Understanding and preventing mitochondrial oxidative damage, Biochem. Soc. Trans., 44, 1219, 10.1042/BST20160108 · DOI
  79. Shirakabe, 2016, Aging and Autophagy in the Heart, Circ. Res., 118, 1563, 10.1161/CIRCRESAHA.116.307474 · DOI
  80. Youle, 2011, Mechanisms of mitophagy, Nat. Rev. Mol. Cell Biol., 12, 9, 10.1038/nrm3028 · DOI · Paper page
  81. Eirin, 2015, Mitochondria: a pathogenic paradigm in hypertensive renal disease, Hypertension, 65, 264, 10.1161/HYPERTENSIONAHA.114.04598 · DOI
  82. Postnov, 2007, Mitochondrial energy conversion disturbance with decrease in ATP production as a source of systemic arterial hypertension, Pathophysiology, 14, 195, 10.1016/j.pathophys.2007.09.002 · DOI
  83. Dromparis, 2013, Mitochondria in vascular health and disease, Annu. Rev. Physiol., 75, 95, 10.1146/annurev-physiol-030212-183804 · DOI
  84. Bernal-Mizrachi, 2005, Vascular respiratory uncoupling increases blood pressure and atherosclerosis, Nature, 435, 502, 10.1038/nature03527 · DOI
  85. Hämäläinen, 2013, Tissue- and cell-type–specific manifestations of heteroplasmic mtDNA 3243A>G mutation in human induced pluripotent stem cell-derived disease model, Proc. Natl. Acad. Sci. U.S.A., 110, E3622, 10.1073/pnas.1311660110 · DOI

Cited by

Sorted by citations

Metadata

Authors
Zhao, X., Cui, L., Xiao, Y., Mao, Q., Aishanjiang, M., Kong, W., Liu, Y., Chen, H., Hong, F., Jia, Z., Wang, M., Jiang, P., & Guan, M.-X.
Affiliations
  • Division of Medical Genetics and Genomics, The Children's Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China
  • Institute of Genetics, and Department of Human Genetics, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China
  • Department of Clinical Laboratory, Wenzhou Traditional Chinese Medicine Hospital, Wenzhou, Zhejiang 325000, China
  • Cardiac Department, Chinese PLA General Hospital, Beijing 100853, China
  • Emergy Medicine Department, Ningbo First Hospital, Zhejiang University School of Medicine, Ningbo, Zhejiang 315000, China
Venue
Nucleic Acids Research
Published
2019-08-28
Volume
47
Issue
19
Pages
10340-10356
ISSN
  • 0305-1048
  • 1362-4962
Cited by
29
References
3
Language
en
Funders
  • National Natural Science Foundation of China (81870314, 81330024, 31601025, 81500611, 81470542)
  • National Key Research and Development Program of China (2018YFC1004802)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review