ColabFold - Making protein folding accessible to all

Cited by (1,085)

Items 801–900 of 1,085

1. Two Toxoplasma gondii putative pore-forming proteins, GRA47 and GRA72, influence small molecule permeability of the parasitophorous vacuole
   Mebratu A. Bitew, Pablo S. Gaete, Christopher Swale, Parag Maru, Jorge E. Contreras, Jeroen P. J. Saeij · 2024 · mBio
2. Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold
   Phuong T. Nguyen, B. Harris, Diego López Mateos, Adriana Hernández González, Adam Murray, Vladimir M. Yarov-Yarovoy · 2024 · Channels
3. Functional Divergence in Orthologous Transcription Factors: Insights from AtCBF2/3/1 and OsDREB1C
   Deyin Deng, Yixin Guo, Liangyu Guo, Chengyang Li, Yuqi Nie, Shuo Wang, Wenwu Wu · 2024 · Molecular Biology and Evolution
4. Fluorescent protein tags affect the condensation properties of a phase-separating viral protein
   Russell J. R. Barkley, Jack C. Crowley, Andrew J. Brodrick, Warren R. Zipfel, John S. L. Parker · 2024 · Molecular Biology of the Cell
5. Highly biased agonism for GPCR ligands via nanobody tethering
   Shivani Sachdev, Brendan A. Creemer, Thomas James Gardella, Ross W. Cheloha · 2024 · Nature Communications
6. Competition between two HUSH complexes orchestrates the immune response to retroelement invasion
   Joshua Miguel C. Danac, Rachael E. Matthews, Akhila Gungi, Chuyan Qin, Harriet T. Parsons, Robin Antrobus, Richard T. Timms, Iva A. Tchasovnikarova · 2024 · Molecular Cell
7. Histones and histone variant families in prokaryotes
   Samuel Schwab, Yimin Hu, Bert van Erp, Marc K M Cajili, Marcus D. Hartmann, Birte Hernandez Alvarez, Vikram Alva, Aimee L. Boyle, Remus Thei Dame · 2024 · Nature Communications
8. AlphaFold2 Modeling and Molecular Dynamics Simulations of the Conformational Ensembles for the SARS-CoV-2 Spike Omicron JN.1, KP.2 and KP.3 Variants: Mutational Profiling of Binding Energetics Reveals Epistatic Drivers of the ACE2 Affinity and Escape Hotspots of Antibody Resistance
   Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, Gennady M. Verkhivker · 2024 · Viruses
9. ToxGIN: an In silico prediction model for peptide toxicity via graph isomorphism networks integrating peptide sequence and structure information
   Qi Yu, Zhixing Zhang, Guixia Liu, Weihua Li, Yun Tang · 2024 · Briefings in Bioinformatics
10. Structural Biology of RNA and Protein‐RNA Complexes after AlphaFold3
    Janosch Hennig · 2025 · ChemBioChem
11. Leveraging protein structural information to improve variant effect prediction
    Lukas Gerasimavicius, Sarah Amalia Teichmann, Joseph A. Marsh · 2025 · Current Opinion in Structural Biology
12. Microtubule architecture connects AMOT stability to YAP/TAZ mechanotransduction and Hippo signalling
    Giada Vanni, Anna Citron, Ambela Suli, Paolo Contessotto, Robin Caire, Alessandro Gandin, Giovanna Mantovan, Francesca Zanconato, Giovanna Brusatin, Michele Di Palma et al. · 2025 · Nature Cell Biology
13. Clustering the protein universe of life using DIAMOND DeepClust
    Benjamin Buchfink, Emile Barbe, Haim Ashkenazy, Klaus Reuter, John A. Kennedy, Hajk‐Georg Drost · 2026 · Nature Methods
14. Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter
    Diego del Alamo, Lillian DeSousa, Rahul Nair, Suhaila Rahman, Jens Meiler, Hassane S. Mchaourab · 2022 · Proceedings of the National Academy of Sciences
15. Mechanistic Studies on Dehydration in Class V Lanthipeptides
    Haoqian Liang, Isaiah J. Lopez, Marina Sánchez‐Hidalgo, Olga Genilloud, Wilfred A. van der Donk · 2022 · ACS Chemical Biology
16. Unexpected diversity of dye-decolorizing peroxidases
    Toru Yoshida, Yasushi Sugano · 2022 · Biochemistry and Biophysics Reports
17. Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing
    Kerry Blair, Muhammad Tehseen, Vlad‐Stefan Raducanu, Taha Shahid, Claudia Lancey, Fahad Rashid, Ramón Crehuet, Samir M. Hamdan, Alfredo De Biasio · 2022 · Nature Communications
18. A Novel CCK Receptor GPR173 Mediates Potentiation of GABAergic Inhibition
    Ling Song He, Heng Shi, Ge Zhang, Yujie Peng, Avirup Ghosh, Mengfan Zhang, Xiaofeng Hu, Chunhua Liu, Yue Shao, Shujie Wang et al. · 2023 · Journal of Neuroscience
19. Single-particle cryo-EM analysis of the shell architecture and internal organization of an intact α-carboxysome
    Sasha L. Evans, Monsour M. J. Al-Hazeem, Daniel Mann, Nicolas Smetacek, Andrew J. Beavil, Yaqi Sun, Taiyu Chen, Gregory F. Dykes, Lu‐Ning Liu, Julien R. C. Bergeron · 2023 · Structure
20. A conserved hymenopteran-specific family of cytochrome P450s protects bee pollinators from toxic nectar alkaloids
    Julian Haas, Elena Beck, Bartlomiej J. Troczka, Angela Hayward, Gillian Hertlein, Marion Zaworra, Bettina Lueke, Benjamin Buer, Frank Maiwald, Michael E. Beck et al. · 2023 · Science Advances
21. Nsp3-N interactions are critical for SARS-CoV-2 fitness and virulence
    Pengfei Li, Biyun Xue, Nicholas Schnicker, Lok-Yin Roy Wong, David Kyle Meyerholz, Stanley M. Perlman · 2023 · Proceedings of the National Academy of Sciences
22. Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2
    Francis Gaudreault, Christopher R. Corbeil, Traian I. Sulea · 2023 · Scientific Reports
23. Structure-conditioned masked language models for protein sequence design generalize beyond the native sequence space
    Deniz Akpinaroglu, Kosuke Seki, Amy Guo, Eleanor Zhu, Mark J. S. Kelly, Tanja Kortemme · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
24. Predicting Experimental Success in De Novo Binder Design: A Meta-Analysis of 3,766 Experimentally Characterised Binders
    Max D. Overath, Anita Mac Rygaard, Christian P. Jacobsen, Valentas Brasas, Oliver Morell, Pietro Sormanni, Timothy P. Jenkins · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
25. Saccharibacteria harness light energy using type-1 rhodopsins that may rely on retinal sourced from microbial hosts
    Jaffe, Alexander L, Konno, Masae, Kawasaki, Yuma, Kataoka, Chihiro, Béjà, Oded, Kandori, Hideki, Inoue, Keiichi, Banfield, Jillian F · 2022 · The ISME Journal
26. Interrogation and validation of the interactome of neuronal Munc18-interacting Mint proteins with AlphaFold2
    Weeratunga, Saroja, Gormal, Rachel S., Liu, Meihan, Eldershaw, Denaye, Livingstone, Emma K., Malapaka, Anusha, Wallis, Tristan P., Bademosi, Adekunle T., Jiang, Anmin, Healy, Michael D. et al. · 2024 · Journal of Biological Chemistry
27. The origin, deployment, and evolution of a plant-parasitic nematode effectorome
    Molloy, Beth, Shin, Dio S., Long, Jonathan, Pellegrin, Clement, Senatori, Beatrice, Vieira, Paulo, Thorpe, Peter J., Damm, Anika, Ahmad, Mariam, Vermeulen, Kerry et al. · 2024 · PLOS Pathogens
28. State of the interactomes: an evaluation of molecular networks for generating biological insights
    Wright, Sarah N, Colton, Scott, Schaffer, Leah V, Pillich, Rudolf T, Churas, Christopher, Pratt, Dexter, Ideker, Trey · 2024 · Molecular Systems Biology
29. Asymmetrical dose responses shape the evolutionary trade-off between antifungal resistance and nutrient use
    Després, Philippe C., Cisneros, Angel F., Alexander, Emilie M. M., Sonigara, Ria, Gagné-Thivierge, Cynthia, Dubé, Alexandre K., Landry, Christian R. · 2022 · Nature Ecology & Evolution
30. A widespread group of large plasmids in methanotrophic Methanoperedens archaea
    Schoelmerich, Marie C., Ouboter, Heleen T., Sachdeva, Rohan, Penev, Petar I., Amano, Yuki, West-Roberts, Jacob, Welte, Cornelia U., Banfield, Jillian F. · 2022 · Nature Communications
31. Bacterial Shedu immune nucleases share a common enzymatic core regulated by diverse sensor domains
    Gu, Yajie, Li, Huan, Deep, Amar, Enustun, Eray, Zhang, Dapeng, Corbett, Kevin D. · 2025 · Molecular Cell
32. Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15
    Kryshtafovych, Andriy, Montelione, Gaetano, Rigden, Daniel, Mesdaghi, Shahram, Karaca, Ezgi, Moult, John · 2023
33. Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold
    Shomar, Helena, Georjon, Héloïse, Feng, Yanlei, Olympio, Bismarck, Guillaume, Marie, Tesson, Florian, Cury, Jean, Wu, Fabai, Bernheim, Aude · 2024 · Nature Ecology & Evolution
34. Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15
    Liu, Jian, Guo, Zhiye, Wu, Tianqi, Roy, Raj S., Chen, Chen, Cheng, Jianlin · 2023 · Communications Chemistry
35. Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales
    Dustin E. Bosch, Romina Abbasian, Bishal Parajuli, Snow Brook Peterson, Joseph D. Mougous · 2023 · mBio
36. Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
    Jun-Bo Shen, Qinze Yu, Shen-Xue Chen, Qingxiong Tan, Jing-Chao Li, Yu Li · 2023 · Nature Computational Science
37. Skp1 proteins are structural components of the synaptonemal complex in C. elegans
    Joshua Blundon, Brenda I. Cesar, Jung Woo Bae, Ivana Čavka, Jocelyn Haversat, Jonas Ries, Simone Köhler, Yumi Kim · 2024 · Science Advances
38. Capsid-mediated control of adeno-associated viral transcription determines host range
    Ezra J. Loeb, Patrick L. Havlik, Zachary C. Elmore, Alan Rosales, Sophia M. Fergione, Trevor J. Gonzalez, Timothy J. Smith, Abigail R. Benkert, David N. Fiflis, Aravind Asokan · 2024 · Cell Reports
39. The Heat Shock Response as a Condensate Cascade
    Annisa Dea, David Pincus · 2024 · Journal of Molecular Biology
40. An alternative broad-specificity pathway for glycan breakdown in bacteria
    Seyed A. Nasseri, Aleksander C. Lazarski, Imke L. Lemmer, Chloe Y. Zhang, Eva Brencher, Hongming Chen, Lyann Sim, Deepesh Panwar, Leo Betschart, L.J. Worrall et al. · 2024 · Nature
41. Pairing interacting protein sequences using masked language modeling
    Lupo, Umberto, Sgarbossa, Damiano, Bitbol, Anne-Florence · 2024 · Proceedings of the National Academy of Sciences
42. A neutralizing antibody prevents postfusion transition of measles virus fusion protein
    Dawid S. Zyla, Roberta Della Marca, Gele Niemeyer, Gillian Zipursky, Kyle N. Stearns, Cameron Leedale, Elizabeth B. Sobolik, Heather Callaway, Chitra Hariharan, Weiwei Peng et al. · 2024 · Science
43. PGAT-ABPp: harnessing protein language models and graph attention networks for antibacterial peptide identification with remarkable accuracy
    Yuelei Hao, Xuyang Liu, Haohao Fu, Xueguang Shao, Wensheng Cai · 2024 · Bioinformatics
44. Structure of the human TIP60 complex
    Ke Chen, Li Wang, Zishuo Yu, Jiali Yu, Yulei Ren, Qianmin Wang, Yanhui Xu · 2024 · Nature Communications
45. Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
    Andrei Stecca Steindorff, María Victoria Aguilar Pontes, Aaron Robinson, Bill Andreopoulos, Kurt M. LaButti, Alan Kuo, Stephen James Mondo, Robert W. Riley, Robert Otillar, Sajeet Haridas et al. · 2024 · Communications Biology
46. Predicting multiple conformations of ligand binding sites in proteins suggests that AlphaFold2 may remember too much
    Maria Lazou, Omeir Khan, Thu Nguyen, Dzmitry Padhorny, Dima Kozakov, Diane Joseph‐McCarthy, Sándor Vajda · 2024 · Proceedings of the National Academy of Sciences
47. Replaying germinal center evolution on a quantified affinity landscape
    William S. DeWitt, Ashni A. Vora, Tatsuya Araki, Jared Galloway, Tanwee Alkutkar, Juliana Bortolatto, Tiago B. R. Castro, Will Dumm, Chris Jennings-Shaffer, Tongqiu Jia et al. · 2026 · Cell
48. Genome-wide characterization of the TALE homeodomain family and the KNOX-BLH interaction network in tomato
    Kentaro Ezura, Akiyoshi Nakamura, Nobutaka Mitsuda · 2022 · Plant Molecular Biology
49. Evolutionary History of Sexual Differentiation Mechanism in Insects
    Yasuhiko Chikami, Miki Okuno, Atsushi Toyoda, Takehiko Itoh, Teruyuki Niimi · 2022 · Molecular Biology and Evolution
50. Deep learning-based molecular dynamics simulation for structure-based drug design against SARS-CoV-2
    Yao Sun, Yanqi Jiao, Chengcheng Shi, Yang Zhang · 2022 · Computational and Structural Biotechnology Journal
51. Characterization of prefusion-F-specific antibodies elicited by natural infection with human metapneumovirus
    Scott A. Rush, Gurpreet Singh Brar, Ching‐Lin Hsieh, Émilie Chautard, Jennifer N. Rainho-Tomko, Chris D. Slade, Christine A. Bricault, Ana Kume, James Kearns, Rachel Groppo et al. · 2022 · Cell Reports
52. Single-Fluorophore Indicator to Explore Cellular and Sub-cellular Lactate Dynamics
    Camila Aburto, Alex Galaz, Angelo Bernier, Pamela Y. Sandoval, Sebastián Holtheuer-Gallardo, Iván Ruminot, Ignacio Soto-Ojeda, Helen Hertenstein, Johanna Schweizer, Stefanie Schirmeier et al. · 2022 · ACS Sensors
53. Biofilm inspired fabrication of functional bacterial cellulose through ex-situ and in-situ approaches
    Katie A. Gilmour, Mahab Aljannat, Christopher Markwell, Paul James, Jane Scott, Yunhong Jiang, Hamdi Torun, Martyn Dade‐Robertson, Meng Zhang · 2022 · Carbohydrate Polymers
54. Beyond sequence: Structure-based machine learning
    Janani Durairaj, Dick de Ridder, Aalt D. J. van Dijk · 2022 · Computational and Structural Biotechnology Journal
55. Efficient production of natural sunscreens shinorine, porphyra-334, and mycosporine-2-glycine in Saccharomyces cerevisiae
    Sojeong Kim, Beom Gi Park, Hyunbin Jin, Daeyeol Lee, Jie Ying Teoh, Yung Jae Kim, Sak Lee, Soo‐Jung Kim, Sang Hyun Moh, Dongwon Yoo et al. · 2023 · Metabolic Engineering
56. d-amino acids signal a stress-dependent run-away response in Vibrio cholerae
    Oihane Irazoki, Josy ter Beek, Laura Álvarez, André Mateus, Rémy Colin, Athanasios Typas, Mikhail M. Savitski, Victor Sourjik, Ronnie P.‐A. Berntsson, Felipe Cava · 2023 · Nature Microbiology
57. Investigating open reading frames in known and novel transcripts using ORFanage
    Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, Mihaela Pertea · 2023 · Nature Computational Science
58. CDCA7 is an evolutionarily conserved hemimethylated DNA sensor in eukaryotes
    Wassing, Isabel E., Nishiyama, Atsuya, Shikimachi, Reia, Jia, Qingyuan, Kikuchi, Amika, Hiruta, Moeri, Sugimura, Keita, Hong, Xin, Chiba, Yoshie, Peng, Junhui et al. · 2024 · Science Advances
59. Proteogenomics reveals sex-biased aging genes and coordinated splicing in cardiac aging
    Han, Yu, Wennersten, Sara A., Wright, Julianna M., Ludwig, R. W., Lau, Edward, Lam, Maggie P. Y. · 2022 · American Journal of Physiology-Heart and Circulatory Physiology
60. Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane
    Park, Si Hoon, Han, Juhyun, Jeong, Byung-Cheon, Song, Ju Han, Jang, Se Hwan, Jeong, Hyeongseop, Kim, Bong Heon, Ko, Young-Gyu, Park, Zee-Yong, Lee, Kyung Eun et al. · 2023 · Nature Structural & Molecular Biology
61. Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15
    Kryshtafovych, Andriy, Montelione, Gaetano T., Rigden, Daniel J., Mesdaghi, Shahram, Karaca, Ezgi, Moult, John · 2023 · Proteins: Structure, Function, and Bioinformatics
62. Mechanism of orphan subunit recognition during assembly quality control
    Yagita, Yuichi, Zavodszky, Eszter, Peak-Chew, Sew-Yeu, Hegde, Ramanujan S. · 2023 · Cell
63. KIF1C activates and extends dynein movement through the FHF cargo adapter
    Abid Ali, Ferdos, Zwetsloot, Alexander J., Stone, Caroline E., Morgan, Tomos E., Wademan, Richard F., Carter, Andrew P., Straube, Anne · 2025 · Nature Structural & Molecular Biology
64. Molecular mechanism of phospholipid transport at the bacterial outer membrane interface
    Yeow, Jiang, Luo, Min, Chng, Shu-Sin · 2023 · Nature Communications
65. PPTC7 antagonizes mitophagy by promoting BNIP3 and NIX degradation via SCFFBXL4
    Nguyen-Dien, Giang Thanh, Townsend, Brendan, Kulkarni, Prajakta Gosavi, Kozul, Keri-Lyn, Ooi, Soo Siang, Eldershaw, Denaye N, Weeratunga, Saroja, Liu, Meihan, Jones, Mathew JK, Millard, S Sean et al. · 2024 · EMBO Reports
66. Identification of RNF114 as ADPr-Ub reader through non-hydrolysable ubiquitinated ADP-ribose
    Kloet, Max S., Chatrin, Chatrin, Mukhopadhyay, Rishov, van Tol, Bianca D. M., Smith, Rebecca, Rotman, Sarah A., Tjokrodirijo, Rayman T. N., Zhu, Kang, Gorelik, Andrii, Maginn, Lucy et al. · 2025 · Nature Communications
67. Optical tools for visualizing and controlling human GLP-1 receptor activation with high spatiotemporal resolution
    Loïc Duffet, Elyse T. Williams, Andrea Gresch, Simin Chen, Musadiq Ahmad Bhat, Dietmar Benke, Nina Hartrampf, Tommaso Patriarchi · 2023 · eLife
68. Stapled Peptides as Direct Inhibitors of Nrf2-sMAF Transcription Factors
    Ramya Modi, Nicholas W. McKee, Ning Zhang, Amir A. Alwali, Samantha L. Nelson, Aditi Lohar, Raluca Ostafe, Donna D. Zhang, Elizabeth I. Parkinson · 2023 · Journal of Medicinal Chemistry
69. A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus
    Simon J. Kelly, Simon B. Hansen, Henriette Rübsam, Pia Saake, Emil B. Pedersen, Kira Gysel, Eva Madland, Shunliang Wu, Stephan Wawra, Dugald E. Reid et al. · 2023 · PLoS Biology
70. The updated Structural Database of Allergenic Proteins (SDAP 2.0) provides 3D models for allergens and incorporated bioinformatics tools
    Surendra S. Negi, Catherine H. Schein, Werner A. Braun · 2023 · Journal of Allergy and Clinical Immunology Global
71. Updated Phylogeny and Protein Structure Predictions Revise the Hypothesis on the Origin of MADS-box Transcription Factors in Land Plants
    Yichun Qiu, Zhen Li, Dirk Walther, Claudia Köhler · 2023 · Molecular Biology and Evolution
72. AAV vectors displaying bispecific DARPins enable dual-control targeted gene delivery
    Samuel A. Theuerkauf, Elena Herrera-Carrillo, Fabian John, Luca J. Zinser, Mariano A. Molina, Vanessa Riechert, Frederic B. Thalheimer, Kathleen Börner, Dirk Grimm, Petr Chlanda et al. · 2023 · Biomaterials
73. Antagonistic interactions between phage and host factors control arbitrium lysis–lysogeny decision
    Sara Zamora‐Caballero, Cora Chmielowska, Nuria Quiles‐Puchalt, Aisling Brady, Francisca Gallego del Sol, Javier Mancheño-Bonillo, Alonso Felipe-Ruíz, Wilfried J. J. Meijer, José R. Penadés, Alberto Marina · 2024 · Nature Microbiology
74. Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages
    Rubén Barcia‐Cruz, David Goudenège, Jorge A. Moura de Sousa, Damien Piel, Martial Marbouty, Eduardo P. C. Rocha, Frédérique Le Roux · 2024 · Nature Communications
75. Novel Archaeal Histamine Oxidase from Natronobeatus ordinarius : Insights into Histamine Degradation for Enhancing Food Safety
    Jing Hou, Xinxin Li, Yu Sun, Yang Li, Xiao-Yan Yang, Yaping Sun, Heng‐Lin Cui · 2024 · Journal of Agricultural and Food Chemistry
76. Triclosan Dioxygenase: A Novel Two-component Rieske Nonheme Iron Ring-hydroxylating Dioxygenase Initiates Triclosan Degradation
    Yiran Yin, Hao Ling Ren, Hao Wu, Zhenmei Lü · 2024 · Environmental Science & Technology
77. ALPK1 signaling pathway activation by HMGB1 drives microglial pyroptosis and ferroptosis and brain injury after acute ischemic stroke
    Ou Du, Ya-Ling Yan, Yuxin Yang, Yu-Xin Yang, An-Guo Wu, Yin-Kun Guo, Kuan Li, Gan Qiao, Junrong Du, Fangyi Long · 2025 · International Immunopharmacology
78. FANTASIA leverages language models to decode the functional dark proteome across the animal tree of life
    Gemma I. Martinez Redondo, Francisco M Pérez-Canales, Belén Carbonetto, José M. Fernández, Israel Barrios-Núñez, Marçal Vázquez-Valls, Ildefonso Cases, Ana Maria Rojas, Rosa Fernández · 2025 · Communications Biology
79. Transposable elements are vectors of recurrent transgenerational epigenetic inheritance
    Pierre Baduel, Louna De Oliveira, Erwann Caillieux, Grégoire Bohl‐Viallefond, Ciana Xu, Mounia El Messaoudi, Aurelien Petit, Maëva Draï, Matteo Barois, Vipin Singh et al. · 2025 · Science
80. A Comprehensive Overview of Antimicrobial Peptides: Broad-Spectrum Activity, Computational Approaches, and Applications
    Camila Langer Marciano, João Vítor Félix de Lima, Murilo Sousa do Couto Rosa, Rafaelly Avelar do Nascimento, Antonio de Oliveira Ferraz, Iago Castro da Silva, Tais Nader Chrysostomo-Massaro, Nathália Gonsales da Rosa-Garzon, Hamilton Cabral · 2025 · Antibiotics
81. Structure and Topology Prediction of Phage Adhesion Devices Using AlphaFold2: The Case of Two Oenococcus oeni Phages
    Adeline Goulet, Christian Cambillau · 2021 · Microorganisms
82. Resistosomes at the interface of pathogens and plants
    Alexander Förderer, Dongli Yu, Ertong Li, Jijie Chai · 2022 · Current Opinion in Plant Biology
83. Delineating the RAS Conformational Landscape
    Parker, Mitchell I., Meyer, Joshua E., Golemis, Erica A., Dunbrack,, Roland L. · 2022 · Cancer Research
84. Mechanical gating of the auditory transduction channel TMC1 involves the fourth and sixth transmembrane helices
    2022
85. Emerging principles in the design of bioengineered made-to-order plant immune receptors
    Clémence Marchal, Hsuan Pai, Sophien Kamoun, Jiorgos Kourelis · 2022 · Current Opinion in Plant Biology
86. The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers
    Martina Oravcová, Minghua Nie, Nicola Zilio, Shintaro Maeda, Yasaman Jami‐Alahmadi, Eros Lazzerini Denchi, James Akira Wohlschlegel, Helle D. Ulrich, Takanori Otomo, Michael Nicholas Boddy · 2022 · eLife
87. A Cold-Active Flavin-Dependent Monooxygenase from Janthinobacterium svalbardensis Unlocks Applications of Baeyer–Villiger Monooxygenases at Low Temperature
    Andrea M. Chánique, Nakia Polidori, Lucija Sovic, Daniel Kracher, Leen Assil‐Companioni, Philipp Galuska, Loreto P. Parra, Karl F. Gruber, Robert Kourist · 2023 · ACS Catalysis
88. Type II Polyketide Synthases: A Bioinformatics‐Driven Approach
    Shengling Xie, Lihan Zhang · 2023 · ChemBioChem
89. Design of cell-type-specific hyperstable IL-4 mimetics via modular de novo scaffolds
    Huilin Yang, Umut Y. Ulge, Alfredo Quijano‐Rubio, Zachary J. Bernstein, David R. Maestas, Jung-Ho Chun, Wentao Wang, Jian‐Xin Lin, Kevin M. Jude, Srujan Singh et al. · 2023 · Nature Chemical Biology
90. O-GlcNAcylation promotes the cytosolic localization of the m6A reader YTHDF1 and colorectal cancer tumorigenesis
    Jie Li, Muhammad Zulfiqar Ahmad, Lei Sang, Yahui Zhan, Yibo Wang, Yonghong Yan, Yue Liu, Weixiao Mi, Mei Lu, Yu Dai et al. · 2023 · Journal of Biological Chemistry
91. Modularity and diversity of target selectors in Tn7 transposons
    Guilhem Faure, Makoto Saito, Sean Benler, Iris Peng, Yuri I. Wolf, Jonathan G. Strecker, Han Altae-Tran, Edwin N. Neumann, David Li, Kira S. Makarova et al. · 2023 · Molecular Cell
92. A collection of Trichoderma isolates from natural environments in Sardinia reveals a complex virome that includes negative-sense fungal viruses with unprecedented genome organizations
    Saul Pagnoni, Safa Oufensou, Virgilio Balmas, Daniela Bulgari, Emanuela Gobbi, Marco Forgia, Quirico Migheli, Massimo Turina · 2023 · Virus Evolution
93. Genome-wide CRISPR screen identifies genes synthetically lethal with GRA17, a nutrient channel encoding gene in Toxoplasma
    Tatiana Christina Paredes-Santos, Mebratu A. Bitew, Christopher Swale, Felipe Rodriguez, Shruthi Krishnamurthy, Yifan Wang, Parag Maru, Lamba Omar Sangaré, Jeroen P. J. Saeij · 2023 · PLoS Pathogens
94. Analysis of the diverse antigenic landscape of the malaria protein RH5 identifies a potent vaccine-induced human public antibody clonotype
    Jordan R. Barrett, Dimitra Pipini, Nathan David Wright, Andrew J. R. Cooper, Giacomo Gorini, Doris Quinkert, Amelia M. Lias, H. Dele Davies, Cassandra A. Rigby, Maya Aleshnick et al. · 2024 · Cell
95. Exploring the repository of de novo-designed bifunctional antimicrobial peptides through deep learning
    Ruihan Dong, Rongrong Liu, Ziyu Liu, Yangang Liu, Gaomei Zhao, Honglei Li, Shiyuan Hou, Xiaohan Ma, Huarui Kang, Jing Liu et al. · 2024 · eLife
96. Asgard archaea reveal the conserved principles of ESCRT-III membrane remodeling
    Souza, Diorge P., Espadas, Javier, Chaaban, Sami, Moody, Edmund R. R., Hatano, Tomoyuki, Balasubramanian, Mohan, Williams, Tom A., Roux, Aurélien, Baum, Buzz · 2025 · Science Advances
97. Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes
    Zehr, Jordan D, Kosakovsky Pond, Sergei L, Millet, Jean K, Olarte-Castillo, Ximena A, Lucaci, Alexander G, Shank, Stephen D, Ceres, Kristina M, Choi, Annette, Whittaker, Gary R, Goodman, Laura B et al. · 2023 · Virus Evolution
98. Structures and comparison of endogenous 2-oxoglutarate and pyruvate dehydrogenase complexes from bovine kidney
    Liu, Shiheng, Xia, Xian, Zhen, James, Li, Zihang, Zhou, Z. Hong · 2022 · Cell Discovery
99. Chromatin binding by HORMAD proteins regulates meiotic recombination initiation
    Milano, Carolyn R, Ur, Sarah N, Gu, Yajie, Zhang, Jessie, Allison, Rachal, Brown, George, Neale, Matthew J, Tromer, Eelco C, Corbett, Kevin D, Hochwagen, Andreas · 2024 · The EMBO Journal
100. Mechanism of receptor assembly via the pleiotropic adipokine Leptin
     Tsirigotaki, Alexandra, Dansercoer, Ann, Verschueren, Koen H. G., Marković, Iva, Pollmann, Christoph, Hafer, Maximillian, Felix, Jan, Birck, Catherine, Van Putte, Wouter, Catteeuw, Dominiek et al. · 2023 · Nature Structural & Molecular Biology