In vitro analysis of RNA polymerase II elongation complex dynamics

The Role of Chromatin during Transcription

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Progression through the RNA Polymerase II CTD Cycle

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DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

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Methylation of Histone H3 by Set2 in Saccharomyces cerevisiae Is Linked to Transcriptional Elongation by RNA Polymerase II

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FACT, a Factor that Facilitates Transcript Elongation through Nucleosomes

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Transcription Elongation Factors Repress Transcription Initiation from Cryptic Sites

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Phosphorylation of Serine 2 within the RNA Polymerase II C-Terminal Domain Couples Transcription and 3′ End Processing

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RNA Polymerase II Elongation Factors of Saccharomyces cerevisiae: a Targeted Proteomics Approach

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mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domainPreprint

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The RNA Polymerase II Carboxy-Terminal Domain (CTD) Code

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Uniform transitions of the general RNA polymerase II transcription complex

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Structure of activated transcription complex Pol II–DSIF–PAF–SPT6

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Conservation between the RNA Polymerase I, II, and III Transcription Initiation Machineries

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The Paf1 Complex Is Essential for Histone Monoubiquitination by the Rad6-Bre1 Complex, Which Signals for Histone Methylation by COMPASS and Dot1p

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Cyclin-dependent kinase control of the initiation-to-elongation switch of RNA polymerase II

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Dynamic association of capping enzymes with transcribing RNA polymerase IIPreprint

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RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts

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Each of three "TATA elements" specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cerevisiae.

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Dimethylation of H3K4 by Set1 Recruits the Set3 Histone Deacetylase Complex to 5′ Transcribed Regions

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Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

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Transitions in RNA polymerase II elongation complexes at the 3′ ends of genes

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The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and exportPreprint

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RNA polymerase II elongation through chromatin

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Gene-specific RNA polymerase II phosphorylation and the CTD code

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A Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays between Kinase, Phosphatase, and Isomerase Enzymes along Genes

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Determinants of Histone H3K4 Methylation Patterns

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Isolation of three proteins that bind to mammalian RNA polymerase II.

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Structure of the complete elongation complex of RNA polymerase II with basal factors

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Phosphorylation of the Transcription Elongation Factor Spt5 by Yeast Bur1 Kinase Stimulates Recruitment of the PAF Complex

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yFACT Induces Global Accessibility of Nucleosomal DNA without H2A-H2B Displacement

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RNA Polymerase II C-Terminal Domain: Tethering Transcription to Transcript and Template

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Phosphorylation of C-terminal domain of RNA polymerase II is not required in basal transcription

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Phosphorylation of the Pol II CTD by KIN28 Enhances BUR1/BUR2 Recruitment and Ser2 CTD Phosphorylation Near Promoters

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THZ1 Reveals Roles for Cdk7 in Co-transcriptional Capping and Pausing

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Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5

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The Swi/Snf Complex Is Important for Histone Eviction during Transcriptional Activation and RNA Polymerase II Elongation In Vivo

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Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications

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Roles for Ctk1 and Spt6 in Regulating the Different Methylation States of Histone H3 Lysine 36

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Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue

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Chemical-genomic dissection of the CTD code

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C-terminal Repeat Domain Kinase I Phosphorylates Ser2 and Ser5 of RNA Polymerase II C-terminal Domain Repeats

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Kinetic Competition between RNA Polymerase II and Sen1-Dependent Transcription Termination

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Expanding the Functional Repertoire of CTD Kinase I and RNA Polymerase II: Novel PhosphoCTD-Associating Proteins in the Yeast Proteome

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Chromatin Assembly In Vitro with Purified Recombinant ACF and NAP-1

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RNA Pol II Dynamics Modulate Co-transcriptional Chromatin Modification, CTD Phosphorylation, and Transcriptional Direction

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Sub1 and RPA Associate with RNA Polymerase II at Different Stages of Transcription

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Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex

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ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies

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Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR‐independent recruitment of Paf1 complex

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Identification and Characterization of Elf1, a Conserved Transcription Elongation Factor in Saccharomyces cerevisiae

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Spn1 Regulates the Recruitment of Spt6 and the Swi/Snf Complex during Transcriptional Activation by RNA Polymerase II

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Cdk9 regulates a promoter-proximal checkpoint to modulate RNA polymerase II elongation rate in fission yeast

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Engineered Covalent Inactivation of TFIIH-Kinase Reveals an Elongation Checkpoint and Results in Widespread mRNA Stabilization

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A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription

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Regulation of Elongating RNA Polymerase II by Forkhead Transcription Factors in Yeast

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The elongation factor Spt4/5 regulates RNA polymerase II transcription through the nucleosome

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Downstream promoter interactions of TFIID TAFs facilitate transcription reinitiationPreprint

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Expression, Purification, and Identification of Associated Proteins of the Full-length hCDK12/CyclinK Complex

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The Yeast Cap Binding Complex Modulates Transcription Factor Recruitment and Establishes Proper Histone H3K36 Trimethylation during Active Transcription

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Proteomic Analysis Demonstrates Activator- and Chromatin-specific Recruitment to Promoters

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Structure of complete Pol II–DSIF–PAF–SPT6 transcription complex reveals RTF1 allosteric activation

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