The DOI matches its Crossref record; 27 of the 27 references it cites were found in a registry or an index.
Remodeling of DNA Methylation and Phenotypic and Transcriptional Changes in Synthetic Arabidopsis Allotetraploids
Open accessAbstract
The joining of different genomes in allotetraploids played a major role in plant evolution, but the molecular implications of this event are poorly understood. In synthetic allotetraploids of Arabidopsis and Cardaminopsis arenosa, we previously demonstrated the occurrence of frequent gene silencing. To explore the involvement of epigenetic phenomena, we investigated the occurrence and effects of DNA methylation changes. Changes in DNA methylation patterns were more frequent in synthetic allotetraploids than in the parents. Treatment with 5-aza-2′-deoxycytidine, an inhibitor of DNA methyltransferase, resulted in the development of altered morphologies in the synthetic allotetraploids, but not in the parents. We profiled mRNAs in control and 5-aza-2′-deoxycytidine-treated parents and allotetraploids by amplified fragment length polymorphism-cDNA. We show that DNA demethylation induced and repressed two different transcriptomes. Our results are consistent with the hypothesis that synthetic allotetraploids have compromised mechanisms of epigenetic gene regulation.
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Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
The Significance of Responses of the Genome to Challenge
McClintock, B. (1984) · Science · doi:10.1126/science.15739260 · Cited by 2,617
Bachem, C. W. B., Van Der Hoeven, R. S., De Bruijn, S. M., Vreugdenhil, D., Zabeau, M., & Visser, R. G. F. (1996) · The Plant Journal · doi:10.1046/j.1365-313x.1996.9050745.x · Cited by 853
Arabidopsis thaliana DNA Methylation Mutants
Vongs, A., Kakutani, T., Martienssen, R. A., & Richards, E. J. (1993) · Science · doi:10.1126/science.8316832 · Cited by 706
Shaked, H., Kashkush, K., Ozkan, H., Feldman, M., & Levy, A. A. (2001) · The Plant Cell · doi:10.1105/tpc.010083 · Cited by 688
Allopolyploidy-Induced Rapid Genome Evolution in the Wheat (Aegilops–Triticum) Group
Ozkan, H., Levy, A. A., & Feldman, M. (2001) · The Plant Cell · doi:10.1105/tpc.010082 · Cited by 585
Phenotypic Instability and Rapid Gene Silencing in Newly Formed Arabidopsis Allotetraploids
Comai, L., Tyagi, A. P., Winter, K., Holmes-Davis, R., Reynolds, S. H., Stevens, Y., & Byers, B. (2000) · The Plant Cell · doi:10.1105/tpc.12.9.1551 · Cited by 531
Self-citationXiong, L. Z., Xu, C. G., Saghai Maroof, M. A., & Zhang, Q. (1999) · Molecular and General Genetics MGG · doi:10.1007/s004380050986 · Cited by 520
Allopolyploidy-Induced Rapid Genome Evolution in the Wheat (Aegilops-Triticum) Group
Ozkan, H. (2001) · THE PLANT CELL ONLINE · doi:10.1105/tpc.13.8.1735 · Cited by 475
Hypermethylated SUPERMAN Epigenetic Alleles in Arabidopsis
Jacobsen, S. E., & Meyerowitz, E. M. (1997) · Science · doi:10.1126/science.277.5329.1100 · Cited by 434
REBASE--restriction enzymes and methylases
Roberts, R. J., & Macelis, D. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.312 · Cited by 360
Genetic and epigenetic interactions in allopolyploid plants
Comai, L. (2000) · Plant Molecular Biology · doi:10.1023/a:1006480722854 · Cited by 331
Self-citationProtein-coding genes are epigenetically regulated in Arabidopsis polyploids
Lee, H.-S., & Chen, Z. J. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.121064698 · Cited by 311
White, S. E., Habera, L. F., & Wessler, S. R. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.25.11792 · Cited by 280
The dynamic nature of polyploid genomes.
Soltis, D. E., & Soltis, P. S. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.18.8089 · Cited by 261
Wassenegger, M. (2000) · Plant Molecular Biology · doi:10.1023/a:1006479327881 · Cited by 243
Chen, Z. J., Comai, L., & Pikaard, C. S. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14891 · Cited by 217
Self-citationDirect detection of methylated cytosine in DNA by use of the restriction enzyme Mspl
Cedar, H., Solage, A., Glaser, G., & Razin, A. (1979) · Nucleic Acids Research · doi:10.1093/nar/6.6.2125 · Cited by 194
Plant gene expression response to Agrobacterium tumefaciens
Ditt, R. F., Nester, E. W., & Comai, L. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.191383498 · Cited by 191
Self-citationAn Inverted Repeat Triggers Cytosine Methylation of Identical Sequences in Arabidopsis
Luff, B., Pawlowski, L., & Bender, J. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80478-5 · Cited by 187
Role of inverted DNA repeats in transcriptional and post-transcriptional gene silencing
Muskens, M. W. M., Vissers, A. P. A., Mol, J. N. M., & Kooter, J. M. (2000) · Plant Molecular Biology · doi:10.1023/a:1006491613768 · Cited by 165
Arabidopsis thaliana Centromere Regions: Genetic Map Positions and Repetitive DNA Structure
Round, E. K., Flowers, S. K., & Richards, E. J. (1997) · Genome Research · doi:10.1101/gr.7.11.1045 · Cited by 162
Genome-Wide Profiling of DNA Methylation Reveals Transposon Targets of CHROMOMETHYLASE3
Tompa, R., McCallum, C. M., Delrow, J., Henikoff, J. G., van Steensel, B., & Henikoff, S. (2002) · Current Biology · doi:10.1016/s0960-9822(01)00622-4 · Cited by 161
Novel flowering time variation in the resynthesized polyploid Brassica napus
Schranz, M. E. (2000) · Journal of Heredity · doi:10.1093/jhered/91.3.242 · Cited by 147
Nucleolar dominance and silencing of transcription
Pikaard, C. S. (1999) · Trends in Plant Science · doi:10.1016/s1360-1385(99)01501-0 · Cited by 130
REBASE--restriction enzymes and methylases
Roberts, R. J. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.268 · Cited by 120
Transposons, DNA methylation and gene control
Martienssen, R. A. (1998) · Trends in Genetics · doi:10.1016/s0168-9525(98)01518-2 · Cited by 109
Cited by
The advantages and disadvantages of being polyploid
Comai, L. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1711 · Cited by 2,287
Self-citationUnderstanding mechanisms of novel gene expression in polyploids
Osborn, T. C., Chris Pires, J., Birchler, J. A., Auger, D. L., Jeffery Chen, Z., Lee, H.-S., Comai, L., Madlung, A., Doerge, R. W., Colot, V., et al. (2003) · Trends in Genetics · doi:10.1016/s0168-9525(03)00015-5 · Cited by 910
Self-citationAdvances in the study of polyploidy since Plant speciation
Soltis, D. E., Soltis, P. S., & Tate, J. A. (2004) · New Phytologist · doi:10.1046/j.1469-8137.2003.00948.x · Cited by 720
Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
Ni, Z., Kim, E.-D., Ha, M., Lackey, E., Liu, J., Zhang, Y., Sun, Q., & Chen, Z. J. (2009) · Nature · doi:10.1038/nature07523 · Cited by 677
Homoeolog expression bias and expression level dominance in allopolyploid cotton
Yoo, M.-J., Szadkowski, E., & Wendel, J. F. (2013) · Heredity · doi:10.1038/hdy.2012.94 · Cited by 441
Metadata
- Authors
- Madlung, A., Masuelli, R. W., Watson, B., Reynolds, S. H., Davison, J., & Comai, L.
- Venue
- Plant Physiology
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-06-01
- Volume
- 129
- Issue
- 2
- Pages
- 733-746
- ISSN
- 0032-0889 (ISSN-L)
- 1532-2548
- OpenAlex
- W2162464086
- Cited by
- 401
- References
- 27
- FWCI
- 22.49
- Type
- journal article
- Language
- en
- Open access
- green
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