Pandemic lineages of extraintestinal pathogenic Escherichia coli

Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing

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Epidemic Profile of Shiga-Toxin–Producing Escherichia coli O104:H4 Outbreak in Germany

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Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance

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OUTCOME FOR INFANTS OF VERY LOW BIRTHWEIGHT: SURVEY OF WORLD LITERATURE

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Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15

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Increasing prevalence of ESBL-producing Enterobacteriaceae in Europe

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Evidence for Horizontal Transmission and Recirculation of Shiga Toxin-Producing Escherichia coli in the Beef Production Chain in South Africa Using Whole Genome Sequencing

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Survey in ruminants from Rwanda revealed high diversity and prevalence of extended-spectrum cephalosporin-resistant Enterobacterales

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Draft genome sequence of Escherichia coli M51-3: a multidrug-resistant strain assigned as ST131-H30 recovered from infant diarrheal infection in Mexico

Magaña-Lizárraga, J. A., Ahumada‐Santos, Y. P., Parra‐Unda, J. R., Uribe-Beltrán, M. D. J., Vega-López, I. F., Prieto-Alvarado, R., & Báez‐Flores, M. E. (2019) · Journal of Global Antimicrobial Resistance · doi:10.1016/j.jgar.2019.10.030 · Cited by 4

High frequency of colonization by extended-spectrum beta-lactamase-producing Gram-negative bacilli in hemodialysis patients and their household contacts in Colombia: dissemination between the community and the hospital

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First Detection of bla NDM-1 -Haboring IncHI2 Plasmid in Escherichia coli Strain Isolated from Goose in China

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L-form switching confers antibiotic, phage and stress tolerance in pathogenic Escherichia coliPreprint

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Molecular Typing of mcr-1 Escherichia Coli Isolates From Pigs and Farm Environment Based on fumC and fimH Alleles

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Recyclable Fe3O4@C@Cu2O as an efficient antimicrobial nanocomposites

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Evolutionary genomic analyses of canine E. coli infections identify a relic capsular locus associated with resistance to multiple classes of antimicrobials

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Lineage-specific variation in frequency and hotspots of recombination in invasive Escherichia coli

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Avian pathogenic Escherichia coli (APEC) isolated from chicks and embryos in the hatchery

Steffen, R. P. B., Queiroz, B., da Silva, A. M., Rocha, V. G. P., Franco, L. S., Barbosa, F. B., & Knöbl, T. (2025) · Brazilian Journal of Microbiology · doi:10.1007/s42770-025-01686-x · Cited by 3

Genotypic characterization of extended-spectrum beta-lactamase-producing E. coli from dogs in northern Germany

Beining, M. W., Guenther, S., Lübke‐Becker, A., Heiden, S. E., Schaufler, K., Kreienbrock, L., & Schwabe, M. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.00087-25 · Cited by 3

Characterisation of extended-spectrum β-lactamase/plasmid AmpC-β-lactamase-producing Escherichia coli isolates from long-term recurrent bloodstream infections

Roer, L., Hansen, F., Hasman, H., Hammerum, A. M., & Cavaco, L. M. (2020) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2020.106041 · Cited by 3

Antibacterial Activity of Cassava Manihot Esculenta Leaves Extract Against Escherichia coli

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Urinary Tract Infections - New Insights

Hegazy, W. A. H. (2023) · IntechOpen eBooks · doi:10.5772/intechopen.101017 · Cited by 3

Occurrence of Major Human Extraintestinal Pathogenic Escherichia coli Sequence Types Among Diarrheic Pet Animals: A Potential Public Health Threat

Shaker, A. A., Samir, A., Zaher, H. M., & Abdel-Moein, K. A. (2023) · Vector-Borne and Zoonotic Diseases · doi:10.1089/vbz.2022.0075 · Cited by 3

Distribution of papA and papG Variants among Escherichia coli Genotypes: Association with Major Extraintestinal Pathogenic Lineages

Fernández-Yáñez, V., Suazo, P., Hormazábal, C., Ibaceta, V., Arenas‐Salinas, M., Vidal, R. M., Silva-Ojeda, F., Carolina Arellano, C., Muñoz, Í., & Canto, F. D. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25126657 · Cited by 3

Beta-lactamase-producing Escherichia coli in migratory geese at West Texas recreational parks

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Avian Pathogenic Escherichia coli: Link to Foodborne Urinary Tract Infections in Humans

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The role of plasmids in carbapenem resistant E. coli in Alameda County, California

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Diversity, distribution, and population structure of Escherichia coli in the lower gastrointestinal tract of humans

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Population Structure of Escherichia coli Isolated From the Human Bloodstream, Human and Animal Feces, and the Environment in Northern Tanzania

Madut, D. B., Rubach, M. P., Scheutz, F., Call, D. R., Gogry, F. A., Carugati, M., Kalengo, N. H., Marandu, A., Maze, M. J., Morrissey, A. B., et al. (2025) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiaf437 · Cited by 2

Prevalence, antimicrobial susceptibility, and virulence profiles of fluoroquinolone-resistant Escherichia coli isolated from companion animals in Sapporo, Japan

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Epidemiology of multidrug resistant E. coli isolates from a German university hospital illustrates dominance of E. coli ST131

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Specific killing and resensitization of pathogenic Escherichia coli strains carrying bla CTX-M-15 β-lactamase using targeted-antibacterial-plasmids (TAPs)

Derollez, E., Roson-Calero, N., Rouzé, P., Berne-Dedieu, A., Ballesté‐Delpierre, C., Fraikin, N., Iorga, B. I., Huang, T., Bigot, S., Vila, J., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf1466 · Cited by 3

Global survey of extraintestinal pathogenic Escherichia coli identifies stable serogroup-virulence-resistance linkages

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First detection of VEB-1 extended-spectrum β-lactamase-producing Escherichia coli clinical isolate in Japan

Shindou, J., Hayashi, W., Kayama, S., Yu, L., Zuo, H., Sugawara, Y., & Sugai, M. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.00523-24 · Cited by 2

High Antimicrobial Susceptibility of Cloacal Enterococci and Escherichia coli from Free-Living Dalmatian and Great White Pelicans with Detection of Cefotaximase CTX-M-15 Producing Escherichia coli ST69

Cardona-Cabrera, T., Martínez-Álvarez, S. A., González‐Azcona, C., Gijón-García, C. J., Αλεξάνδρου, Ό., Catsadorakis, G., Azmanis, P., Torres, C., & Höfle, Ú. (2025) · Antibiotics · doi:10.3390/antibiotics14010083 · Cited by 2

Trends in Uropathogenic Escherichia coli Genotype and Antimicrobial Resistance From 2019 to 2022 in a San Francisco Public Hospital Network

Joyce, S., Belmont, C., Scheffler, A. W., Ravi, K., Kim, H., Rubin-Saika, N., Elises, M., Soto, A., Mahesh, P. A., Chambers, H. F. “., et al. (2025) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofaf579 · Cited by 2

Comparative Metabolic Characterization of Extraintestinal Pathogenic Escherichia coli Blood Isolates from Saudi Arabia

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Infecção do trato urinário causada por Escherichia coli uropatogênica resistente a antibióticos: um importante problema de saúde pública

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Implications of Escherichia coli community diversity in free-ranging Australian pinniped pups

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Identification and Evaluation of Pathogenic Genes (traT, hly, aer, pap, and fimH) and Antibiotic Resistance Genes (blaTEM, blaSHV, and blaCTX) in Escherichia coli in Patients Referred to Gonabad Hospitals, Iran

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Complete genome of Escherichia coli sequence type 73 with acquired blaTEM-1 and high genotypic virulence load identified in human saliva

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Whole genome sequencing and phylogenetic analysis to examine acquisition of Escherichia coli clones during international travel

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Emergence of multidrug resistant Escherichia coli coharboring fosA3 and ESBL genes from retail ducks along slaughter line

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Third‐Generation Cephalosporin‐Resistant Uropathogenic Escherichia coli From Community‐ and Hospital‐Acquired Infections Show High Level of Antibiotic Resistance and Specific Virulence Traits

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First national study on genomic profiling of Escherichia coli in United Arab Emirates (UAE) aquatic environments shows diverse Quinolone and Cephalosporin resistance

Papadopoulou, A., Moubareck, C. A., Ryder, D., Powell, A. L., Stone, M., Joseph, A., Khan, M. A., Light, E., Verner–Jeffreys, D. W., Stahl, H. J., et al. (2025) · Environmental Challenges · doi:10.1016/j.envc.2025.101226 · Cited by 1

Bacterial diversity screening in endangered pelicans reveals high prevalence of methicillin-susceptible Staphylococcus aureus

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Improved in silico and in vitro methods for Escherichia coli LPS outer core typing

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A Rational Approach to Developing a Phage Biopreparation: Boosting Lytic Efficiency and Countering Resistance in Pathogenic Escherichia coli

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Antibiotic Resistance and Phylogenetic Diversity of Escherichia coli Isolated from Hospital Wastewater in Gabon

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Multidrug-resistant avian pathogenic Escherichia coli ST162 among trafficked psittacine birds

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Molecular Epidemiology and Drug Resistance of Extraintestinal Pathogenic Escherichia coli Bloodstream Isolates From Adults Worldwide (2011–2023)

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Molecular Characterization of Shiga Toxin Producing Escherichia coli Isolated From Both Diarrheic and Apparently Health Calves

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Draft Genome Sequences of Sixteen Fluoroquinolone-Resistant Extraintestinal Escherichia coli Isolates from Human Patients

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New Strategies for the Prevention of Urinary Tract Infections by Uropathogenic Escherichia coli

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Identificación de enterobacterias en el agua potable del oriente del Estado de México

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Phylogenetic groups and extraintestinal virulence genes of inflow Escherichia coli entering a municipal drinking water treatment facility (St. Paul, MN, USA)

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Distribution of Enterotoxigenic E. coli and Enteroinvasive E. Coli Among Children with Severe Diarrhea in AL Najaf AL Ashraf / Iraq

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Genetic structure and antimicrobial resistance of foodborne Escherichia coli in Australia

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Overexpression of target enzyme gene fabI and efflux pump decrease triclosan susceptibility in Escherichia coliPreprint

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Iron regulates contrasting toxicity of uropathogenic Eschericia coli in macrophages and epithelial cellsPreprint

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Bacterial genome wide association study substantiates papGII of Escherichia coli as a patient independent driver of urosepsisPreprint

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Genotype dependence of virulence-associated genes in ESBL-producing Escherichia coli isolated from the blood of patients with urinary tract infectionsPreprint

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Circulation et persistance de pathogènes nosocomiaux multirésistants et hautement résistants émergents dans l’environnement hospitalier : complexité des unités de transmission

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The ignored pandemic of typhoid

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Biofilm Production by Food-Transmitted Bacteria and Their Control by Selected Nanoparticles

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Resistência bacteriana a antimicrobianos em uma comunidade remota da Floresta Amazônica.

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Relações filogenéticas entre Escherichia coli enteroagregativa e uropatogênica.

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Advanced Microbial Strain Subtyping Techniques for Molecular Epidemiology Investigations

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Elucidating the unknown ecology of bacterial pathogens from genomic data

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Relação ancestral e pan-resistoma plasmidial de Escherichia coli produtora de CTX-M-8 e MCR-1 na interface humana, animal e ambiental

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First Detection of Pathogenic Escherichia coli Isolates Associated With Donkey Foals’ Diarrhea in Northern ChinaPreprint

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Genetic characterisation of a large antibiotic resistant environmental ST131 E. coli plasmid using a long read hybrid assembly approachPreprint

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Genomic Characterisation of Extra-intestinal Pathogenic Escherichia coli from Human Infection

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Análise do potencial uropatogênico de Escherichia coli enteroagregativa.

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Resistenzentwicklung uropathogener Erreger

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Increase in the Rate of Gut Carriage of Fluoroquinolone-Resistant Escherichia coli despite a Reduction in Antibiotic PrescriptionsPreprint

Tchesnokova, V. L., Larson, L., Basova, I., Sledneva, Y., Choudhury, D., Solyanik, T., Heng, J., Bonilla, T. C., Pham, S., Schartz, E. M., et al. (2022) · medRxiv · doi:10.1101/2022.12.16.22283539

Investigation of Electrical Properties of Iron Oxide Nanoparticles Bonded with Ionic Solutions for Microwave Ablation Systems

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Virulence-associated traits and antimicrobial resistance of the uropathogenic Escherichia coli (UPEC) strains in relation to phylogenetic background and host factors from Malaysian patients

Chin, J.-J., Choo, Q. C., Hassan, M. S., Ho, W. Y., & Chew, C. H. (2023) · Malaysian Journal of Microbiology · doi:10.21161/mjm.220134

Progress toward the development of an effective vaccine for Extraintestinal pathogenic E. coli (ExPEC): The application of the multiple-protein subunits vaccine in different murine modelsPreprint

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Magistro, G. (2023) · Springer Reference Medizin · doi:10.1007/978-3-662-63400-4_247

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Additional file 2 of Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli

Shawa, M., Furuta, Y., Mulenga, G., Mubanga, M., Mulenga, E., Zorigt, T., Kaile, C., Simbotwe, M., Paudel, A., Hang’ombe, B., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14570729

Additional file 1 of Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli

Shawa, M., Furuta, Y., Mulenga, G., Mubanga, M., Mulenga, E., Zorigt, T., Kaile, C., Simbotwe, M., Paudel, A., Hang’ombe, B., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14570726

Additional file 1 of The prevalence and mechanism of triclosan resistance in Escherichia coli isolated from urine samples in Wenzhou, China

Zeng, W., Xu, W., Xu, Y., Liao, W., Zhao, Y., Zheng, X., Xu, C., Zhou, T., & Cao, J. (2020) · Figshare · doi:10.6084/m9.figshare.13047381

Additional file 1 of Genome-wide association reveals host-specific genomic traits in Escherichia coli

Tiwari, S. K., van der Putten, B. C. L., Fuchs, T. M., Vinh, T. N., Bootsma, M., Oldenkamp, R., La Ragione, R., Matamoros, S., Hoa, N. T., Berens, C., et al. (2023) · Figshare · doi:10.6084/m9.figshare.22618685

Additional file 1 of Recurrent bacteremia with a hypermucoviscous Escherichia coli isolated from a patient with perihilar cholangiocarcinoma: insights from a comprehensive genome-based analysis

Neumann, B., Lippmann, N., Wendt, S., Karlas, T., Lübbert, C., Werner, G., Pfeifer, Y., & Schuster, C. F. (2022) · Figshare · doi:10.6084/m9.figshare.20155558

Additional file 1 of Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis

Cuénod, A., Agnetti, J., Seth-Smith, H. M. B., Roloff, T., Wälchli, D. L., Shcherbakov, D., Akbergenov, R., Tschudin‐Sutter, S., Bassetti, S., Siegemund, M., et al. (2023) · Figshare · doi:10.6084/m9.figshare.24465139

Additional file 2 of Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis

Cuénod, A., Agnetti, J., Seth-Smith, H. M. B., Roloff, T., Wälchli, D. L., Shcherbakov, D., Akbergenov, R., Tschudin‐Sutter, S., Bassetti, S., Siegemund, M., et al. (2024) · Figshare · doi:10.6084/m9.figshare.24465311

Additional file 1 of Quantitative microbial risk assessment for waterborne pathogens in a wastewater treatment plant and its receiving surface water body

Mbanga, J., Abia, A. L. K., Amoako, D. G., & Essack, S. Y. (2020) · Figshare · doi:10.6084/m9.figshare.13233300

Exploration of the genomic diversity of third-generation cephalosporin-resistant Escherichia coli in Australian clinical settings

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Maherault, A.-C. (2019) · doi:10.70675/11f8483cz83f7z49b6z89daz1061f4fd4d71

Tools for massive bacterial comparative genomics : Development and Applications

Perrin, A. (2022) · theses.fr (ABES) · doi:10.70675/a061aa00z774bz40c5zb870zba9af4cac64b

Analyse moléculaire et génomique des souches d'Escherichia coli : prévalence de la colibactine et résistance antimicrobienne

Azour, A. (2022) · theses.fr (ABES) · doi:10.70675/6b7eb9adz683fz4e80zb3efzb14ac932371a

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Simões, M. M. (2026) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)