Cited by 413Escherichia coli research studiesAntibiotic Resistance in BacteriaUrinary Tract Infections Management

The DOI matches its Crossref record; 115 of the 115 references it cites were found in a registry or an index.

Pandemic lineages of extraintestinal pathogenic Escherichia coli

Open access

Riley, L.W.·2014·Clinical Microbiology and Infection

Open this paper in CoChat — free account

Abstract

Pathogenic Escherichia coli strains cause a wide variety of intestinal and extraintestinal infections. The widespread geographical clonal dissemination of intestinal pathogenic E. coli strains, such as E. coli O157:H7, is well recognized, and its spread is most often attributed to contaminated food products. On the other hand, the clonal dissemination of extraintestinal pathogenic E. coli (ExPEC) strains is also recognized, but the mechanism of their spread is not well explained. Here, I describe major pandemic clonal lineages of ExPEC based on multilocus sequence typing (MLST), and discuss possible reasons for their global dissemination. These lineages include sequence type (ST)131, ST393, ST69, ST95, and ST73, which are all associated with both community-onset and healthcare-associated infections, in particular urinary tract infections and bloodstream infections. As with many other types of drug-resistant Gram-negative and Gram-positive bacterial infections, drug-resistant ExPEC infections are recognized to be caused by a limited set of clonal lineages. However, reported observations on these major pandemic lineages suggest that the resistance phenotype is not necessarily the determinant of their clonal dissemination. Both epidemiological factors and their intrinsic biological 'fitness' are likely to contribute. An important public health and clinical concern is that pandemicity itself may be a determinant of progressive drug resistance acquisition by clonal lineages. New research is urgently needed to better understand the epidemiological and biological causes of ExPEC pandemicity.

Integrity signals

Registry

Crossref · 10.1111/1469-0691.12646

Cites

115 of 115 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing
Tenover, F. C., Arbeit, R. D., Goering, R. V., Mickelsen, P. A., Murray, B. E., Persing, D. H., & Swaminathan, B. (1995) · Journal of Clinical Microbiology · doi:10.1128/jcm.33.9.2233-2239.1995 · Cited by 8,203
Diarrheagenic Escherichia coli
Nataro, J. P., & Kaper, J. B. (1998) · Clinical Microbiology Reviews · doi:10.1128/cmr.11.1.142 · Cited by 5,109
Sex and virulence in Escherichia coli : an evolutionary perspective
Wirth, T., Falush, D., Lan, R., Colles, F. M., Mensa, P., Wieler, L. H., Karch, H., Reeves, P. R., Maiden, M. C. J., Ochman, H., et al. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05172.x · Cited by 2,075
Extended-spectrum β-lactamase-producing Enterobacteriaceae: an emerging public-health concern
Pitout, J. D. D., & Laupland, K. B. (2008) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(08)70041-0 · Cited by 2,068
Extended Virulence Genotypes of Escherichia coli Strains from Patients with Urosepsis in Relation to Phylogeny and Host Compromise
Johnson, J. R., & Stell, A. L. (2000) · The Journal of Infectious Diseases · doi:10.1086/315217 · Cited by 1,269
Epidemic Profile of Shiga-Toxin–Producing Escherichia coli O104:H4 Outbreak in Germany
Frank, C., Werber, D., Cramer, J. P., Askar, M., Faber, M., an der Heiden, M., Bernard, H., Fruth, A., Prager, R., Spode, A., et al. (2011) · New England Journal of Medicine · doi:10.1056/nejmoa1106483 · Cited by 1,139
Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance
Woodford, N., Turton, J. F., & Livermore, D. M. (2011) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2011.00268.x · Cited by 881
OUTCOME FOR INFANTS OF VERY LOW BIRTHWEIGHT: SURVEY OF WORLD LITERATURE
Stewart, A. C. (1981) · The Lancet · doi:10.1016/s0140-6736(81)92198-x · Cited by 835
Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15
Nicolas-Chanoine, M.-H., Blanco, J., Leflon‐Guibout, V., Demarty, R., Alonso, M. P., Caniça, M., Park, Y. J., Lavigne, J., Pitout, J. D. D., & Johnson, J. R. (2007) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkm464 · Cited by 815
Increasing prevalence of ESBL-producing Enterobacteriaceae in Europe
Coque, T. M., Baquero, F., & Cantón, R. (2008) · Eurosurveillance · doi:10.2807/ese.13.47.19044-en · Cited by 808

Show all 115 references

Sorted by citations

The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae
Mathers, A. J., Peirano, G., & Pitout, J. D. D. (2015) · Clinical Microbiology Reviews · doi:10.1128/cmr.00116-14 · Cited by 897
Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: recent reports
Sarowska, J., Futoma-Kołoch, B., Jama−Kmiecik, A., Frej−Mądrzak, M., Książczyk, M., Bugla‐Płoskońska, G., & Choroszy−Król, I. (2019) · Gut Pathogens · doi:10.1186/s13099-019-0290-0 · Cited by 786
The population genetics of pathogenic Escherichia coli
Denamur, É., Clermont, O., Bonacorsi, S., & Gordon, D. M. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0416-x · Cited by 731
Global Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages
Manges, A. R., Geum, H. M., Guo, A., Edens, T. J., Fibke, C. D., & Pitout, J. D. D. (2019) · Clinical Microbiology Reviews · doi:10.1128/cmr.00135-18 · Cited by 592
Antibiotic Resistance Among Uropathogenic Escherichia coli
Kot, B. (2019) · Polish Journal of Microbiology · doi:10.33073/pjm-2019-048 · Cited by 279
Antimicrobial Resistance in the Global Health Network: Known Unknowns and Challenges for Efficient Responses in the 21st Century
Coque, T. M., Cantón, R., Pérez‐Cobas, A. E., Fernández-de-Bobadilla, M. D., & Baquero, F. (2023) · Microorganisms · doi:10.3390/microorganisms11041050 · Cited by 288
Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
Touchon, M., Perrin, A., de Sousa, J. A. M., Vangchhia, B., Burn, S., O'Brien, C. L., Denamur, É., Gordon, D. M., & Rocha, E. P. C. (2020) · PLoS Genetics · doi:10.1371/journal.pgen.1008866 · Cited by 232
Extraintestinal Pathogenic Escherichia coli: Virulence Factors and Antibiotic Resistance
Sora, V. M., Meroni, G., Martino, P. A., Soggiù, A., Bonizzi, L., & Zecconi, A. (2021) · Pathogens · doi:10.3390/pathogens10111355 · Cited by 224
Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1
Holt, K. E., Kenyon, J. J., Hamidian, M., Schultz, M. B., Pickard, D., Gordon Dougan, B., & Hall, R. M. (2016) · Microbial Genomics · doi:10.1099/mgen.0.000052 · Cited by 172
Diversity of Hybrid- and Hetero-Pathogenic Escherichia coli and Their Potential Implication in More Severe Diseases
Santos, A. C. D. M., Santos, F. F., Silva, R. M., & Gomes, T. A. T. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00339 · Cited by 172
Distinguishing Pathovars from Nonpathovars: Escherichia coli
Riley, L. W. (2020) · Microbiology Spectrum · doi:10.1128/microbiolspec.ame-0014-2020 · Cited by 184
Self-citation
Escherichia coli ST131: The Quintessential Example of an International Multiresistant High-Risk Clone
Mathers, A. J., Peirano, G., & Pitout, J. D. D. (2014) · Advances in applied microbiology · doi:10.1016/bs.aambs.2014.09.002 · Cited by 163
Occurrence and Characteristics of Mobile Colistin Resistance (mcr) Gene-Containing Isolates from the Environment: A Review
Anyanwu, M. U., Jaja, I. F., & Nwobi, O. C. (2020) · International Journal of Environmental Research and Public Health · doi:10.3390/ijerph17031028 · Cited by 147
Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection
Forde, B. M., Roberts, L. W., Phan, M., Peters, K. M., Fleming, B. A., Russell, C. W., Lenherr, S. M., Myers, J. B., Barker, A. P., Fisher, M. A., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-11571-5 · Cited by 125
Reaching the End of the Line: Urinary Tract Infections
Tamadonfar, K. O., Omattage, N. S., Spaulding, C. N., & Hultgren, S. J. (2019) · Microbiology Spectrum · doi:10.1128/microbiolspec.bai-0014-2019 · Cited by 113
Emergence and Dissemination of Extraintestinal Pathogenic High-Risk International Clones of Escherichia coli
Kocsis, B., Gulyás, D., & Szabó, D. (2022) · Life · doi:10.3390/life12122077 · Cited by 117
Escherichia coli β-Lactamases: What Really Matters
Bajaj, P., Singh, N. S., & Virdi, J. S. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00417 · Cited by 107
Urinary tract infections attributed to diverse ExPEC strains in food animals: evidence and data gaps
Singer, R. S. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00028 · Cited by 93
Raw meat-based diets for companion animals: a potential source of transmission of pathogenic and antimicrobial-resistant Enterobacteriaceae
Nüesch‐Inderbinen, M., Treier, A., Zurfluh, K., & Stephan, R. (2019) · Royal Society Open Science · doi:10.1098/rsos.191170 · Cited by 87
Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages
Biggel, M., Xavier, B. B., Johnson, J. R., Nielsen, K. L., Frimodt‐Møller, N., Matheeussen, V., Goossens, H., Moons, P., & Puyvelde, S. V. (2020) · Nature Communications · doi:10.1038/s41467-020-19714-9 · Cited by 85
WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark
Roer, L., Hansen, F., Thomsen, M. C. F., Knudsen, J. D., Hansen, D. S., Wang, M., Samulioniené, J., Justesen, U. S., Røder, B. L., Schumacher, H., et al. (2017) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkx092 · Cited by 84
Multifunctional antibiotic- and zinc-containing mesoporous bioactive glass scaffolds to fight bone infection
Heras, C., Jiménez‐Holguín, J., Doadrio, A. L., Vallet‐Regí, M., Sánchez‐Salcedo, S., & Salinas, A. J. (2020) · Acta Biomaterialia · doi:10.1016/j.actbio.2020.07.044 · Cited by 84
Characteristics of Quinolone Resistance in Escherichia coli Isolates from Humans, Animals, and the Environment in the Czech Republic
Röderová, M., Halová, D., Papoušek, I., Dolejská, M., Masaříková, M., Hanulík, V., Pudová, V., Brož, P., Sedláková, M. H., Sauer, P., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.02147 · Cited by 82
Molecular Epidemiology of Extraintestinal PathogenicEscherichia coli
Johnson, J. R., & Russo, T. A. (2018) · EcoSal Plus · doi:10.1128/ecosalplus.esp-0004-2017 · Cited by 81
Escherichia coli, cattle and the propagation of disease
Stein, R. A., & Katz, D. E. (2017) · FEMS Microbiology Letters · doi:10.1093/femsle/fnx050 · Cited by 81
Whole-Genome Analysis of Antimicrobial-Resistant and Extraintestinal Pathogenic Escherichia coli in River Water
Gomi, R., Matsuda, T., Matsumura, Y., Yamamoto, M., Tanaka, M., Ichiyama, S., & Yoneda, M. (2016) · Applied and Environmental Microbiology · doi:10.1128/aem.02703-16 · Cited by 87
Persistent Pandemic Lineages of Uropathogenic Escherichia coli in a College Community from 1999 to 2017
Yamaji, R., Rubin, J., Thys, E., Friedman, C. R., & Riley, L. W. (2018) · Journal of Clinical Microbiology · doi:10.1128/jcm.01834-17 · Cited by 79
Self-citation
Extraintestinal Foodborne Pathogens
Riley, L. W. (2020) · Annual Review of Food Science and Technology · doi:10.1146/annurev-food-032519-051618 · Cited by 81
Self-citation
Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene
Cummins, M. L., Reid, C. J., Chowdhury, P. R., Bushell, R. N., Esbert, N., Tivendale, K. A., Noormohammadi, A. H., Islam, S., Marenda, M. S., Browning, G. F., et al. (2019) · Microbial Genomics · doi:10.1099/mgen.0.000250 · Cited by 76
Quantitative microbial risk assessment for waterborne pathogens in a wastewater treatment plant and its receiving surface water body
Mbanga, J., Abia, A. L. K., Amoako, D. G., & Essack, S. Y. (2020) · BMC Microbiology · doi:10.1186/s12866-020-02036-7 · Cited by 76
Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli
Shawa, M., Furuta, Y., Mulenga, G., Mubanga, M., Mulenga, E., Zorigt, T., Kaile, C., Simbotwe, M., Paudel, A., Hang’ombe, B. M., et al. (2021) · Antimicrobial Resistance and Infection Control · doi:10.1186/s13756-021-00941-8 · Cited by 72
Antimicrobial Resistance and Clonal Lineages of Escherichia coli from Food-Producing Animals
Silva, A., Silva, V., Pereira, J. E., Maltez, L., Igrejas, G., Valentão, P., Falco, V., & Poeta, P. (2023) · Antibiotics · doi:10.3390/antibiotics12061061 · Cited by 73
Bacteriophage LM33_P1, a fast-acting weapon against the pandemic ST131-O25b:H4Escherichia coliclonal complex
Dufour, N., Clermont, O., Combe, B. L., Messika, J., Dion, S., Khanna, V., Denamur, É., Ricard, J.-D., & Debarbieux, L. (2016) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkw253 · Cited by 73
Household Clustering of Escherichia coli Sequence Type 131 Clinical and Fecal Isolates According to Whole Genome Sequence Analysis
Johnson, J. R., Davis, G. S., Clabots, C., Johnston, B., Porter, S. B., DebRoy, C., Pomputius, W. F., Ender, P. T., Cooperstock, M. S., Slater, B. C. S., et al. (2016) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofw129 · Cited by 68
Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe
Ewers, C., de Jong, A., Prenger‐Berninghoff, E., Garch, F. E., Leidner, U., Tiwari, S. K., & Semmler, T. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.626774 · Cited by 67
Intensity and Mechanisms of Fluoroquinolone Resistance within the H 30 and H 30Rx Subclones of Escherichia coli Sequence Type 131 Compared with Other Fluoroquinolone-Resistant E. coli
Johnson, J. R., Johnston, B., Kuskowski, M. A., Sokurenko, E. V., & Tchesnokova, V. L. (2015) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00673-15 · Cited by 67
Pandemic extra-intestinal pathogenic Escherichia coli (ExPEC) clonal group O6-B2-ST73 as a cause of avian colibacillosis in Brazil
Cunha, M. P. V., Saidenberg, A. B. S., Moreno, A. M., Ferreira, A. J. P., Vieira, M. A. M., Gomes, T. A. T., & Knöbl, T. (2017) · PLoS ONE · doi:10.1371/journal.pone.0178970 · Cited by 67
Hospital and community wastewater as a source of multidrug-resistant ESBL-producing Escherichia coli
Dávidová‐Geržová, L., Lausova, J., Sukkar, I., Nešporová, K., Nechutna, L., Vlková, K., Chudějová, K., Krůtová, M., Palkovičová, J., Kaspar, J., et al. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1184081 · Cited by 70
Rapid Emergence, Subsidence, and Molecular Detection of Escherichia coli Sequence Type 1193- fimH64 , a New Disseminated Multidrug-Resistant Commensal and Extraintestinal Pathogen
Johnson, J. R., Johnston, B., Porter, S. B., Clabots, C., Bender, T. L., THURAS, P. D., Trott, D. J., Cobbold, R. N., Mollinger, J. L., Ferrieri, P., et al. (2019) · Journal of Clinical Microbiology · doi:10.1128/jcm.01664-18 · Cited by 64
Companion Animals Are Spillover Hosts of the Multidrug-Resistant Human Extraintestinal Escherichia coli Pandemic Clones ST131 and ST1193
Kidsley, A. K., White, R. T., Beatson, S. A., Saputra, S., Schembri, M. A., Gordon, D., Johnson, J. R., O’Dea, M. A., Mollinger, J. L., Abraham, S., et al. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.01968 · Cited by 63
Antimicrobial Resistance Profile and ExPEC Virulence Potential in Commensal Escherichia coli of Multiple Sources
Massella, E., Giacometti, F., Bonilauri, P., Reid, C. J., Djordjevic, S. P., Merialdi, G., Bacci, C., Fiorentini, L., Massi, P., Bardasi, L., et al. (2021) · Antibiotics · doi:10.3390/antibiotics10040351 · Cited by 64
Presence of Type I-F CRISPR/Cas systems is associated with antimicrobial susceptibility in Escherichia coli
Aydin, S., Personne, Y., Newire, E., Laverick, R., Russell, O., Roberts, A. P., & Enne, V. I. (2017) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkx137 · Cited by 61
The role of potentiating mutations in the evolution of pandemic Escherichia coli clones
Cummins, E., Snaith, A. E., McNally, A., & Hall, R. J. (2021) · European Journal of Clinical Microbiology & Infectious Diseases · doi:10.1007/s10096-021-04359-3 · Cited by 58
Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia
Vangchhia, B., Abraham, S., Bell, J. M., Collignon, P., Gibson, J. S., Ingram, P. R., Johnson, J. R., Kennedy, K., Trott, D. J., Turnidge, J. D., et al. (2016) · Microbiology · doi:10.1099/mic.0.000367 · Cited by 62
Genomic features of colistin resistant Escherichia coli ST69 strain harboring mcr-1 on IncHI2 plasmid from raw milk cheese in Egypt
Hammad, A. M., Hoffmann, M., González‐Escalona, N., Abbas, N. H., Yao, K., Koenig, S. S. K., Allué‐Guardia, A., & Eppinger, M. (2019) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2019.04.021 · Cited by 61
Whole Genome Sequencing of Escherichia coli From Store-Bought Produce
Reid, C. J., Blau, K., Jechalke, S., Smalla, K., & Djordjevic, S. P. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.03050 · Cited by 60
Genome-Wide Discovery of Genes Required for Capsule Production by Uropathogenic Escherichia coli
Goh, K. G. K., Phan, M., Forde, B. M., Chong, T. M., Yin, W., Chan, K., Ulett, G. C., Sweet, M. J., Beatson, S. A., & Schembri, M. A. (2017) · mBio · doi:10.1128/mbio.01558-17 · Cited by 57
Clonal Structure, Virulence Factor-encoding Genes and Antibiotic Resistance of Escherichia coli, Causing Urinary Tract Infections and Other Extraintestinal Infections in Humans in Spain and France during 2016
Flament-Simon, S.-C., Nicolas-Chanoine, M.-H., García, V., Duprilot, M., Mayer, N., Alonso, M. P., García‐Meniño, I., Blanco, J. E., Blanco, J., & Blanco, J. (2020) · Antibiotics · doi:10.3390/antibiotics9040161 · Cited by 57
Escherichia coli from Commercial Broiler and Backyard Chickens Share Sequence Types, Antimicrobial Resistance Profiles, and Resistance Genes with Human Extraintestinal Pathogenic Escherichia coli
Borges, C. A., Tarlton, N. J., & Riley, L. W. (2019) · Foodborne Pathogens and Disease · doi:10.1089/fpd.2019.2680 · Cited by 55
Self-citation
Population Structure and Antimicrobial Resistance of Canine Uropathogenic Escherichia coli
LeCuyer, T. E., Byrne, B. A., Daniels, J. B., Diaz-Campos, D. V., Hammac, G. K., Miller, C. B., Besser, T. E., & Davis, M. A. (2018) · Journal of Clinical Microbiology · doi:10.1128/jcm.00788-18 · Cited by 58
Evolutionary and functional history of the Escherichia coli K1 capsule
Arredondo-Alonso, S., Blundell‐Hunter, G., Fu, Z., Gladstone, R. A., Fillol-Salom, A., Loraine, J., Cloutman-Green, E., Johnsen, P. J., Samuelsen, Ø., Pöntinen, A. K., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-39052-w · Cited by 53
In vitro and in silico evaluation of the antimicrobial and antioxidant activities of spiropyrazoline oxindole congeners
Chalkha, M., Chebbac, K., Nour, H., Nakkabi, A., Moussaoui, A. E., Tüzün, B., Bourhia, M., Chtita, S., Bakhouch, M., Laaroussi, H., et al. (2023) · Arabian Journal of Chemistry · doi:10.1016/j.arabjc.2023.105465 · Cited by 53
Clonal Diversity, Virulence Potential and Antimicrobial Resistance of Escherichia coli Causing Community Acquired Urinary Tract Infection in Switzerland
Nüesch-Inderbinen, M., Baschera, M., Zurfluh, K., Hächler, H., Nüesch, H.-J., & Stephan, R. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.02334 · Cited by 45
Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil
Campos, A. C. C., Andrade, N. L., Ferdous, M., Chlebowicz, M. A., Santos, C. C., Correal, J. C. D., Foe, J. R. L. T., Rosa, A. C. P., Damasco, P. V., Friedrich, A. W., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00243 · Cited by 53
Resveratrol in Intestinal Health and Disease: Focusing on Intestinal Barrier
Wang, Y., Hong, C., Wu, Z., Li, S., Xia, Y., Liang, Y., He, X., Xiao, X., & Tang, W. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.848400 · Cited by 54
Genomic analysis of Escherichia coli strains isolated from diseased chicken in the Czech Republic
Papoušková, A., Masaříková, M., Valček, A., Šenk, D., Čejková, D., Jahodářová, E., & Čížek, A. (2020) · BMC Veterinary Research · doi:10.1186/s12917-020-02407-2 · Cited by 55
Epidemic Emergence in the United States of Escherichia coli Sequence Type 131- H 30 (ST131- H 30), 2000 to 2009
Johnson, J. R., Porter, S. B., THURAS, P. D., & Castanheira, M. (2017) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00732-17 · Cited by 51
Parameters for one health genomic surveillance of Escherichia coli from Australia
Watt, A. E., Cummins, M. L., Donato, C. M., Wirth, W., Porter, A. F., Andersson, P., Donner, E., Australian Pathogen Genomics One Health Working Group, Sintchenko, V., Arnott, A., et al. (2025) · Nature Communications · doi:10.1038/s41467-024-55103-2 · Cited by 61
Molecular Epidemiology of Dairy Cattle-Associated Escherichia coli Carrying bla CTX-M Genes in Washington State
Afema, J. A., Ahmed, S., Besser, T. E., Jones, L. P., Sischo, W. M., & Davis, M. A. (2018) · Applied and Environmental Microbiology · doi:10.1128/aem.02430-17 · Cited by 50
Global Distribution of O Serotypes and Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli Collected From the Blood of Patients With Bacteremia Across Multiple Surveillance Studies
Weerdenburg, E., Davies, T., Morrow, B., Zomer, A. L., Hermans, P., Go, O., Spiessens, B., van den Hoven, T., van Geet, G., Aitabi, M., et al. (2023) · Clinical Infectious Diseases · doi:10.1093/cid/ciac421 · Cited by 49
High Prevalence of Extended-Spectrum Beta-Lactamases in Escherichia coli Strains Collected From Strictly Defined Community-Acquired Urinary Tract Infections in Adults in China: A Multicenter Prospective Clinical Microbiological and Molecular Study
Jia, P., Zhu, Y., Li, X., Kudinha, T., Yang, Y., Zhang, G., Zhang, J., Xu, Y., & Yang, Q. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.663033 · Cited by 49
Molecular Characterization of the Multidrug Resistant Escherichia coli ST131 Clone
Schembri, M. A., Zakour, N. L. B., Phan, M., Forde, B. M., Stanton-Cook, M. J., & Beatson, S. A. (2015) · Pathogens · doi:10.3390/pathogens4030422 · Cited by 48
Predictive phage therapy for Escherichia coli urinary tract infections: Cocktail selection for therapy based on machine learning models
Keith, M., de la Torriente, A. P., Chalka, A., Vallejo‐Trujillo, A., McAteer, S. P., Paterson, G. K., Low, A. S., & Gally, D. L. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2313574121 · Cited by 47
Emergence of Antibiotic Resistance-Associated Clones AmongEscherichia coliRecovered From Newborns With Early-Onset Sepsis and Meningitis in the United States, 2008–2009: Table 1.
Weissman, S. J., Hansen, N. I., Zaterka-Baxter, K. M., Higgins, R. D., & Stoll, B. J. (2015) · Journal of the Pediatric Infectious Diseases Society · doi:10.1093/jpids/piv013 · Cited by 47
Complete genomic analysis of ST117 lineage extraintestinal pathogenic Escherichia coli (ExPEC) to reveal multiple genetic determinants to drive its global transmission: ST117 E. coli as an emerging multidrug‐resistant foodborne ExPEC with zoonotic potential
Xia, F., Jiang, M., Wen, Z., Wang, Z., Wang, M., Xu, Y., Zhuge, X., & Dai, J. (2022) · Transboundary and Emerging Diseases · doi:10.1111/tbed.14678 · Cited by 46
Occurrence of Clinically Important Lineages, Including the Sequence Type 131 C1-M27 Subclone, among Extended-Spectrum-β-Lactamase-Producing Escherichia coli in Wastewater
Gomi, R., Matsuda, T., Matsumura, Y., Yamamoto, M., Tanaka, M., Ichiyama, S., & Yoneda, M. (2017) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00564-17 · Cited by 46
High Prevalence of blaCTX-M-15 Gene among Extended-Spectrum β-Lactamase-Producing Escherichia coli Isolates Causing Extraintestinal Infections in Bangladesh
Mazumder, R., Abdullah, A., Ahmed, D., & Hussain, A. (2020) · Antibiotics · doi:10.3390/antibiotics9110796 · Cited by 46
Extraintestinal Pathogenic and Antimicrobial-Resistant Escherichia coli, Including Sequence Type 131 (ST131), from Retail Chicken Breasts in the United States in 2013
Johnson, J. R., Porter, S. B., Johnston, B., THURAS, P. D., Clock, S. A., Crupain, M., & Rangan, U. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.02956-16 · Cited by 45
Convergence of virulence and antimicrobial resistance in increasingly prevalent Escherichia coli ST131 papGII+ sublineages
Biggel, M., Moons, P., Nguyen, M. N., Goossens, H., & Puyvelde, S. V. (2022) · Communications Biology · doi:10.1038/s42003-022-03660-x · Cited by 46
Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy
Rebrošová, K., Samek, O., Bernatová, S., Růžička, F., Ježek, J., Hároniková, A., Šiler, M., Zemánek, P., & Holá, V. (2015) · Sensors · doi:10.3390/s151129635 · Cited by 44
Genomic Analysis of Factors Associated with Low Prevalence of Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli Sequence Type 95 Strains
Stephens, C. M., Adams, S. M., Sekhon, M., Johnson, J. R., & Riley, L. W. (2017) · mSphere · doi:10.1128/msphere.00390-16 · Cited by 43
Self-citation
pCERC3 from a commensal ST95 Escherichia coli: A ColV virulence-multiresistance plasmid carrying a sul3-associated class 1 integron
Moran, R. A., Holt, K. E., & Hall, R. M. (2016) · Plasmid · doi:10.1016/j.plasmid.2016.02.002 · Cited by 43
Ready‐to‐eat street food: a potential source for dissemination of multidrug‐resistant Escherichia coli epidemic clones in Quito, Ecuador
Zurita, J., Yánez, F., Sevillano, G., Ortega-Paredes, D., & y Miño, A. P. (2019) · Letters in Applied Microbiology · doi:10.1111/lam.13263 · Cited by 40
Marked increase in incidence for bloodstream infections due to Escherichia coli, a side effect of previous antibiotic therapy in the elderly
van der Mee-Marquet, N. L., Blanc, D., Gbaguidi‐Haore, H., Borges, S. D. S., Viboud, Q., Bertrand, X., & Quentin, R. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00646 · Cited by 40
Genomic Epidemiology of Major Extraintestinal Pathogenic Escherichia coli Lineages Causing Urinary Tract Infections in Young Women Across Canada
Fibke, C. D., Croxen, M. A., Geum, H. M., Glass, M., Wong, E., Avery, B. P., Daignault, D., Mulvey, M. R., Reid‐Smith, R. J., Parmley, E. J., et al. (2019) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofz431 · Cited by 41
Genomic Characterization of Escherichia coli Isolates Belonging to a New Hybrid aEPEC/ExPEC Pathotype O153:H10-A-ST10 eae-beta1 Occurred in Meat, Poultry, Wildlife and Human Diarrheagenic Samples
Díaz-Jiménez, D., García-Meniño, I., Herrera, A., García, V., López-Beceiro, A., Alonso, M. P., Blanco, J., & Mora, A. (2020) · Antibiotics · doi:10.3390/antibiotics9040192 · Cited by 33
Commiphora leptophloeos Phytochemical and Antimicrobial Characterization
Pereira, J. J. D. S., Pereira, A. D. P. C., Jandú, J. J. B., da Paz, J. A., Crovella, S., Correia, M. T. D. S., & Silva, J. D. A. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00052 · Cited by 40
The Relative Impact of Community and Hospital Antibiotic Use on the Selection of Extended-spectrum Beta-lactamase–producing Escherichia coli
MacFadden, D. R., Fisman, D. N., Hanage, W. P., & Lipsitch, M. (2018) · Clinical Infectious Diseases · doi:10.1093/cid/ciy978 · Cited by 39
ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin
Roer, L., Overballe‐Petersen, S., Hansen, F., Johannesen, T. B., Stegger, M., Bortolaia, V., Leekitcharoenphon, P., Korsgaard, H. B., Seyfarth, A. M., Mossong, J., et al. (2018) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dky484 · Cited by 39
Molecular types, virulence profiles and antimicrobial resistance of Escherichia coli causing bovine mastitis
Nüesch-Inderbinen, M., Käppeli, N., Morach, M., Eicher, C., Corti, S., & Stephan, R. (2019) · Veterinary Record Open · doi:10.1136/vetreco-2019-000369 · Cited by 42
Hospital-diagnosed infections with Escherichia coli clonal group ST131 are mostly acquired in the community
Muller, A., Gbaguidi‐Haore, H., Cholley, P., Hocquet, D., Sauget, M., & Bertrand, X. (2021) · Scientific Reports · doi:10.1038/s41598-021-85116-6 · Cited by 39
Plasmid-driven strategies for clone success in Escherichia coli
Arredondo-Alonso, S., Pöntinen, A. K., Gama, J. A., Gladstone, R. A., Harms, K., Tonkin‐Hill, G. Q., Thorpe, H. A., Simonsen, G. S., Samuelsen, Ø., Johnsen, P. J., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-57940-1 · Cited by 38
Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla CTX-M Gene-Bearing Plasmids in Escherichia coli
Maherault, A.-C., Kemble, H. E., Magnan, M., Gachet, B., Roche, D., Nagard, H. L., Tenaillon, O., Denamur, É., Branger, C., & Landraud, L. (2019) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.01130-19 · Cited by 39
Characterization of beta-lactam-resistant Escherichia coli from Australian fruit bats indicates anthropogenic origins
McDougall, F. K., Boardman, W., & Power, M. L. (2021) · Microbial Genomics · doi:10.1099/mgen.0.000571 · Cited by 43
The role of H4 flagella in Escherichia coli ST131 virulence
Kakkanat, A., Totsika, M., Schaale, K., Duell, B. L., Lo, A. W. H., Phan, M., Moriel, D. G., Beatson, S. A., Sweet, M. J., Ulett, G. C., et al. (2015) · Scientific Reports · doi:10.1038/srep16149 · Cited by 37
Current developments to use linear MALDI‐TOF spectra for the identification and typing of bacteria and the characterization of other cells/organisms related to infectious diseases
Karger, A. (2016) · PROTEOMICS - CLINICAL APPLICATIONS · doi:10.1002/prca.201600038 · Cited by 37
Change in the Structure of Escherichia coli Population and the Pattern of Virulence Genes along a Rural Aquatic Continuum
Petit, F., Clermont, O., Delannoy, S., Servais, P., Gourmelon, M., Fach, P., Oberlé, K., Fournier, M., Denamur, É., & Berthe, T. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00609 · Cited by 37
The prevalence and mechanism of triclosan resistance in Escherichia coli isolated from urine samples in Wenzhou, China
Zeng, W., Xu, W., Xu, Y., Liao, W., Zhao, Y., Zheng, X., Xu, C., Zhou, T., & Cao, J. (2020) · Antimicrobial Resistance and Infection Control · doi:10.1186/s13756-020-00823-5 · Cited by 37
Fine-Scale Structure Analysis Shows Epidemic Patterns of Clonal Complex 95, a Cosmopolitan Escherichia coli Lineage Responsible for Extraintestinal Infection
Gordon, D. M., Geyik, S., Clermont, O., O'Brien, C. L., Huang, S., Abayasekara, C. L., Rajesh, A., Kennedy, K., Collignon, P., Pavli, P., et al. (2017) · mSphere · doi:10.1128/msphere.00168-17 · Cited by 43
Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome of very-low-birth-weight preterm infants.
Kiu, R., Darby, E. M., Alcon-Giner, C., Acuna-Gonzalez, A., Camargo, A., Lamberte, L. E., Phillips, S., Sim, K., Shaw, A. G., Clarke, P., et al. (2025) · Nature communications · doi:10.1038/s41467-025-62584-2 · Cited by 36
“Indeed, we identi ﬁ ed speci ﬁ c STs linked to neonatal infections, such as E. coli ST1193 47 , ST73 and ST95 47,48 , and K. pneumoniae ST432 49 strains, which are typically drug-resistant strains and of clinical signi ﬁ cance.”
Routes of Transmission in the Food Chain
Stein, R. A., & Chirilă, M. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-385007-2.00003-6 · Cited by 42
Snapshot Study of Whole Genome Sequences of Escherichia coli from Healthy Companion Animals, Livestock, Wildlife, Humans and Food in Italy
Massella, E., Reid, C. J., Cummins, M., Anantanawat, K., Zingali, T., Serraino, A., Piva, S., Giacometti, F., & Djordjevic, S. (2020) · Antibiotics · doi:10.3390/antibiotics9110782 · Cited by 29
Genome-wide association reveals host-specific genomic traits in Escherichia coli
Tiwari, S. K., van der Putten, B. C. L., Fuchs, T. M., Trung, N. V., Bootsma, M., Oldenkamp, R., Ragione, R. M. L., Matamoros, S., Hoa, N. T., Berens, C., et al. (2023) · BMC Biology · doi:10.1186/s12915-023-01562-w · Cited by 38
Companions in antimicrobial resistance: examining transmission of common antimicrobial-resistant organisms between people and their dogs, cats, and horses
Caddey, B., Fisher, S., Barkema, H. W., & Nobrega, D. B. (2025) · Clinical Microbiology Reviews · doi:10.1128/cmr.00146-22 · Cited by 35
Antibiotic Resistance, Virulence, and Genetic Background of Community-Acquired Uropathogenic Escherichia coli from Algeria
Yahiaoui, M., Robin, F., Bakour, R., Hamidi, M., Bonnet, R., & Messai, Y. (2015) · Microbial Drug Resistance · doi:10.1089/mdr.2015.0045 · Cited by 35
Antibiotic resistance is linked to carriage of papC and iutA virulence genes and phylogenetic group D background in commensal and uropathogenic Escherichia coli from infants and young children
Karami, N., Wold, A. E., & Adlerberth, I. (2016) · European Journal of Clinical Microbiology & Infectious Diseases · doi:10.1007/s10096-016-2854-y · Cited by 35
Resistance mechanisms and molecular epidemiology of carbapenem-nonsusceptible Escherichia coli in Taiwan, 2012-2015
Chang, Y.-T., Siu, L.-K. K., Wang, J., Wu, T., Chen, Y., Chuang, Y.-C., Lin, J., & Lu, P. (2019) · Infection and Drug Resistance · doi:10.2147/idr.s208231 · Cited by 35
Complex Multilevel Control of Hemolysin Production by Uropathogenic Escherichia coli
Nhu, N. T. K., Phan, M., Forde, B. M., Murthy, A. M. V., Peters, K. M., Day, C. J., Poole, J., Kidd, T. J., Welch, R. A., Jennings, M. P., et al. (2019) · mBio · doi:10.1128/mbio.02248-19 · Cited by 35
Virulence Properties of mcr-1-Positive Escherichia coli Isolated from Retail Poultry Meat
Kubelová, M., Koláčková, I., Gelbíčová, T., Florianová, M., Kalová, A., & Karpíšková, R. (2021) · Microorganisms · doi:10.3390/microorganisms9020308 · Cited by 35
Increase in the community circulation of ciprofloxacin-resistant Escherichia coli despite reduction in antibiotic prescriptions
Tchesnokova, V. L., Larson, L., Basova, I., Sledneva, Y., Choudhury, D., Solyanik, T., Heng, J., Bonilla, T. C., Pham, S., Schartz, E. M., et al. (2023) · Communications Medicine · doi:10.1038/s43856-023-00337-2 · Cited by 34

Authors: Riley, L. W.
Affiliations: University of California, Berkeley (US)
Corresponding author: Riley, L.W.
ORCID: Riley, L.W.
Venue: Clinical Microbiology and Infection
Publisher: Elsevier BV
Published: 2014-05
Volume: 20
Issue: 5
Pages: 380-390
ISSN: 1198-743X (ISSN-L)
DOI: 10.1111/1469-0691.12646
OpenAlex: W2027836512
Cited by: 412
References: 115
Citations by year: 2026: 18 · 2025: 43 · 2024: 42 · 2023: 46 · 2022: 47 · 2021: 37 · 2020: 57 · 2019: 36 · 2018: 22 · 2017: 24 · 2016: 17 · 2015: 19 · 2014: 4
FWCI: 2.79
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: www.elsevier.com/tdm/userlicense/1.0/ (tdm)
www.elsevier.com/legal/tdmrep-license (tdm)
www.elsevier.com/open-access/userlicense/1.0/ (vor, 365 d)
Locations: Clinical Microbiology and Infection (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
Health Sciences › Medicine › Microbiology (medical) › Antibiotic Resistance in Bacteria
Health Sciences › Medicine › Urology › Urinary Tract Infections Management
Keywords: extraintestinal pathogenic Escherichia coli, multilocus sequence typing, ST131, ST69, ST95, ST73, antimicrobial resistance, urinary tract infection, bloodstream infection, community-onset infection, nosocomial infections, clonal spread, bacterial fitness
MeSH terms: Escherichia coli, Escherichia coli Infections, Humans, Virulence, Bacterial Typing Techniques, Molecular Epidemiology, Cell Lineage, Drug Resistance, Bacterial, Pandemics, Multilocus Sequence Typing

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Pandemic lineages of extraintestinal pathogenic Escherichia coli

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks