Molecular clocks and the human condition: approaching their characterization in human physiology and disease
Open accessAbstract
Molecular clockworks knit together diverse biological networks and compelling evidence from model systems infers their importance in metabolism, immunological and cardiovascular function. Despite this and the diurnal variation in many aspects of human physiology and the phenotypic expression of disease, our understanding of the role and importance of clock function and dysfunction in humans is modest. There are tantalizing hints of connection across the translational divide and some correlative evidence of gene variation and human disease but most of what we know derives from forced desynchrony protocols in controlled environments. We now have the ability to monitor quantitatively ex vivo or in vivo the genome, metabolome, proteome and microbiome of humans in the wild. Combining this capability, with the power of mobile telephony and the evolution of remote sensing, affords a new opportunity for deep phenotyping, including the characterization of diurnal behaviour and the assessment of the impact of the clock on approved drug function.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The role biorhythms play as biomarkers for disease onset is less well understood.
“The role biorhythms play as biomarkers for disease onset is less well understood6.”
From Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank (2023) · cites this paper as [6]
The most significant associations represent common chronic disease phenotypes that have been associated with circadian disruption.
“Here, the most significant associations represent common chronic disease phenotypes that have been associated with circadian disruption6,27.”
From Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank (2023) · cites this paper as [6]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The Spread of Obesity in a Large Social Network over 32 Years
Christakis, N. A., & Fowler, J. H. (2007) · New England Journal of Medicine · doi:10.1056/nejmsa066082 · Cited by 5,007 · see citing works
A circadian gene expression atlas in mammals: Implications for biology and medicine
Zhang, R., Lahens, N. F., Ballance, H. I., Hughes, M. E., & Hogenesch, J. B. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1408886111 · Cited by 2,304 · see citing works
Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes
Marcheva, B., Ramsey, K. M., Buhr, E. D., Kobayashi, Y., Su, H., Ko, C. H., Ivanova, G., Omura, C., Mo, S., Vitaterna, M. H., et al. (2010) · Nature · doi:10.1038/nature09253 · Cited by 1,525 · see citing works
Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis
Thaiss, C. A., Zeevi, D., Levy, M., Zilberman-Schapira, G., Suez, J., Tengeler, A. C., Abramson, L., Katz, M. N., Korem, T., Zmora, N., et al. (2014) · Cell · doi:10.1016/j.cell.2014.09.048 · Cited by 1,449 · see citing works
Kondratov, R. V., Kondratova, A. A., Gorbacheva, V. Y., Vykhovanets, O. V., & Antoch, M. P. (2006) · Genes & Development · doi:10.1101/gad.1432206 · Cited by 1,188 · see citing works
Rudic, R. D., McNamara, P., Curtis, A.-M., Boston, R. C., Panda, S., Hogenesch, J. B., & FitzGerald, G. A. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020377 · Cited by 1,059 · see citing works
Self-citationPhysiological significance of a peripheral tissue circadian clock
Lamia, K. A., Storch, K.-F., & Weitz, C. J. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0806717105 · Cited by 1,048 · see citing works
Chaix, A., Zarrinpar, A., Miu, P., & Panda, S. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.11.001 · Cited by 956 · see citing works
Unimolecular Dual Incretins Maximize Metabolic Benefits in Rodents, Monkeys, and Humans
Finan, B., Ma, T., Ottaway, N., Müller, T. D., Habegger, K. M., Heppner, K. M., Kirchner, H., Holland, J., Hembree, J., Raver, C., et al. (2013) · Science Translational Medicine · doi:10.1126/scitranslmed.3007218 · Cited by 696 · see citing works
Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration
Musiek, E. S., Lim, M. M., Yang, G., Bauer, A. Q., Qi, L., Lee, Y., Roh, J. H., Ortiz-Gonzalez, X., Dearborn, J. T., Culver, J. P., et al. (2013) · Journal of Clinical Investigation · doi:10.1172/jci70317 · Cited by 524 · see citing works
Self-citationObesity in mice with adipocyte-specific deletion of clock component Arntl
Paschos, G. K., Ibrahim, S., Song, W.-L., Kunieda, T., Grant, G., Reyes, T. M., Bradfield, C. A., Vaughan, C. H., Eiden, M., Masoodi, M., et al. (2012) · Nature Medicine · doi:10.1038/nm.2979 · Cited by 465 · see citing works
Self-citationModeling of a Human Circadian Mutation Yields Insights into Clock Regulation by PER2
Xu, Y., Toh, K. L., Jones, C. R., Shin, J., Fu, Y., & Ptáček, L. J. (2007) · Cell · doi:10.1016/j.cell.2006.11.043 · Cited by 405 · see citing works
Circadian variation of blood pressure and the vascular response to asynchronous stress
Curtis, A. M., Cheng, Y., Kapoor, S. C., Reilly, D. F., Price, T. S., & FitzGerald, G. A. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611680104 · Cited by 401 · see citing works
Self-citationShimba, S., Ogawa, T., Hitosugi, S., Ichihashi, Y., Nakadaira, Y., Kobayashi, M., Tezuka, M., Kosuge, Y., Ishige, K., Ito, Y., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025231 · Cited by 347 · see citing works
Circadian control of innate immunity in macrophages by miR-155 targeting <i>Bmal1</i>
Curtis, A. M., Fagundes, C. T., Yang, G., Palsson-McDermott, E. M., Wochal, P., McGettrick, A. F., Foley, N. H., Early, J. O., Chen, L., Zhang, H., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1501327112 · Cited by 311 · see citing works
Self-citationMeta‐analysis on night shift work and risk of metabolic syndrome
Wang, F., Zhang, L., Zhang, Y., Zhang, B., He, Y., Xie, S., Li, M., Miao, X., Chan, E. Y. Y., Tang, J. L., et al. (2014) · Obesity Reviews · doi:10.1111/obr.12194 · Cited by 302 · see citing works
Susceptibility Rhythm to E. coli Endotoxin and Bioassay.
Halberg, F., Johnson, E. A., Brown, B. W., & Bittner, J. J. (1960) · Experimental Biology and Medicine · doi:10.3181/00379727-103-25439 · Cited by 280 · cited 1× · see citing works
“The inflammatory response to LPS injection also varies as a function of clock time in humans [13], suggesting the potential relevance to clock dysfunction to the development of inflammatory diseases, such as atherosclerosis.”
BackgroundTime-restricted feeding attenuates age-related cardiac decline in <i>Drosophila</i>
Gill, S., Le, H. D., Melkani, G. C., & Panda, S. (2015) · Science · doi:10.1126/science.1256682 · Cited by 272 · see citing works
Scheer, F. A. J. L., & Shea, S. A. (2014) · Blood · doi:10.1182/blood-2013-07-517060 · Cited by 172 · see citing works
Oxalic acid and diacylglycerol 36:3 are cross-species markers of sleep debt
Weljie, A. M., Meerlo, P., Goel, N., Sengupta, A., Kayser, M. S., Abel, T., Birnbaum, M. J., Dinges, D. F., & Sehgal, A. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1417432112 · Cited by 158 · cited 1× · see citing works
“We can access oscillatory gene expression in circulating cells and hair follicles ex vivo [28], the oscillatory metabolome in exhaled breath, urine and plasma [29,30], the oscillatory microbiome which, at least in mice, is subject to clock control [31] and phone based apps can record such variables as our communicatio…”
BackgroundBioinformatic Analysis of Circadian Gene Oscillation in Mouse Aorta
Rudic, R. D., McNamara, P., Reilly, D., Grosser, T., Curtis, A.-M., Price, T. S., Panda, S., Hogenesch, J. B., & FitzGerald, G. A. (2005) · Circulation · doi:10.1161/circulationaha.105.568626 · Cited by 157 · see citing works
Self-citationGenetic Components of the Circadian Clock Regulate Thrombogenesis In Vivo
Westgate, E. J., Cheng, Y., Reilly, D. F., Price, T. S., Walisser, J. A., Bradfield, C. A., & FitzGerald, G. A. (2008) · Circulation · doi:10.1161/circulationaha.107.739227 · Cited by 155 · see citing works
Self-citationEffect of melatonin on nocturnal blood pressure: meta-analysis of randomized controlled trials
Laudon, M., Grossman, & Zisapel, N. (2011) · Vascular Health and Risk Management · doi:10.2147/vhrm.s24603 · Cited by 147 · see citing works
The Role of Clock Genes in Pharmacology
Paschos, G. K., Baggs, J. E., Hogenesch, J. B., & FitzGerald, G. A. (2010) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pharmtox.010909.105621 · Cited by 105 · see citing works
Self-citationTime-Dependent Effects of Aspirin on Blood Pressure and Morning Platelet Reactivity
Bonten, T. N., Snoep, J. D., Assendelft, W. J., Zwaginga, J. J., Eikenboom, J. C. J., Huisman, M. V., Rosendaal, F. R., & van der Bom, J. G. (2015) · Hypertension · doi:10.1161/hypertensionaha.114.04980 · Cited by 80 · see citing works
Circadian Variation of the Human Metabolome Captured by Real-Time Breath Analysis
Sinues, P., Tarokh, L., Li, X., Kohler, M., Brown, S. A., Zenobi, R., & Dallmann, R. (2014) · PLoS ONE · doi:10.1371/journal.pone.0114422 · Cited by 75 · see citing works
Hermida, R. C., Ayala, D. E., Calvo, C., López, J. E., Fernández, J. R., Mojón, A., Dominguez, M. J., & Covelo, M. (2003) · Hypertension · doi:10.1161/01.hyp.0000072335.73748.0d · Cited by 73 · see citing works
Circadian Regulation of mTOR by the Ubiquitin Pathway in Renal Cell Carcinoma
Okazaki, H., Matsunaga, N., Fujioka, T., Okazaki, F., Akagawa, Y., Tsurudome, Y., Ono, M., Kuwano, M., Koyanagi, S., & Ohdo, S. (2013) · Cancer Research · doi:10.1158/0008-5472.can-12-3241 · Cited by 65 · see citing works
Metabolic clock generates nutrient anticipation rhythms in mTOR signaling
Khapre, R. V., Patel, S. A., Kondratova, A. A., Chaudhary, A., Velingkaar, N., Antoch, M. P., & Kondratov, R. V. (2014) · Aging · doi:10.18632/aging.100686 · Cited by 63 · see citing works
Knitting Up the Raveled Sleave of Care
Yang, G., Paschos, G. K., Curtis, A. M., Musiek, E. S., McLoughlin, S. C., & FitzGerald, G. A. (2013) · Science Translational Medicine · doi:10.1126/scitranslmed.3007225 · Cited by 45 · see citing works
Self-citationRhythmic expression of circadian clock genes in human leukocytes and beard hair follicle cells
Watanabe, M., Hida, A., Kitamura, S., Enomoto, M., Ohsawa, Y., Katayose, Y., Nozaki, K., Moriguchi, Y., Aritake, S., Higuchi, S., et al. (2012) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2012.08.008 · Cited by 42 · see citing works
Ambulant 24‐h glucose rhythms mark calendar and biological age in apparently healthy individuals
Wijsman, C. A., van Heemst, D., Hoogeveen, E. S., Slagboom, P. E., Maier, A. B., de Craen, A. J. M., OUDERAA, F. V. D., Pijl, H., Westendorp, R. G. J., & Mooijaart, S. P. (2012) · Aging Cell · doi:10.1111/acel.12042 · Cited by 22 · see citing works
David James Purslove Barker: clinician, scientist and father of the ‘Fetal Origins Hypothesis’
Cooper, C. C., Phillips, D. I. W., Osmond, C., et al. (2014) · Journal of Developmental Origins of Health and Disease · doi:10.1017/s2040174414000099 · Cited by 6 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank
Brooks, T. G., Lahens, N. F., Grant, G. R., Sheline, Y. I., FitzGerald, G. A., & Skarke, C. (2023) · Nature Communications · doi:10.1038/s41467-023-40977-5 · Cited by 57 · see citing works
Self-citationSlattery, J., MacFabe, D., Kahler, S., & Frye, R. (2016) · Current Pharmaceutical Design · doi:10.2174/1381612822666160905123953 · Cited by 20 · see citing works
- Authors
- Fitzgerald, G. A., Yang, G., Paschos, G. K., Liang, X., & Skarke, C.
- Affiliations
- University of Pennsylvania (US)
- Corresponding author
- Fitzgerald, G. A.
- Venue
- Diabetes, Obesity and Metabolism
- Publisher
- Wiley
- Published
- 2015-09
- Volume
- 17
- Issue
- S1
- Pages
- 139-142
- ISSN
- 1462-8902 (ISSN-L)
- 1463-1326
- PMC
- PMC4562067
- OpenAlex
- W2130203282
- Cited by
- 15
- References
- 33
- Citations by year
- 2026: 1 · 2024: 2 · 2023: 1 · 2022: 2 · 2021: 1 · 2020: 3 · 2019: 1 · 2018: 1 · 2017: 1 · 2016: 1 · 2015: 1
- FWCI
- 0.14
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Diabetes Obesity and Metabolism (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (HL097800)
- National Heart, Lung, and Blood Institute (R01HL097800)
- National Institute of Environmental Health Sciences (P30ES013508)
- Topics
- Life Sciences › Neuroscience › Endocrine and Autonomic Systems › Circadian rhythm and melatonin
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Sleep and Work-Related Fatigue
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Sleep and related disorders
- Keywords
- circadian clock, molecular clock, human physiology, circadian dysfunction, diurnal variation, metabolism, cardiovascular function, forced desynchrony, deep phenotyping, diurnal activity, metabolome, proteome, microbiome
- MeSH terms
- Circadian Rhythm, Humans, Genome, Human, Proteome, Metabolome, Drug Chronotherapy, Circadian Clocks, Remote Sensing Technology, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review