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Molecular genetics of blood‐fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors
Open accessAbstract
Summary: Anthocyanin pigmentation is an important consumer trait in peach (Prunus persica). In this study, the genetic basis of the blood‐flesh trait was investigated using the cultivar Dahongpao, which shows high levels of cyanidin‐3‐glucoside in the mesocarp. Elevation of anthocyanin levels in the flesh was correlated with the expression of an R2R3 MYB transcription factor, Pp MYB 10.1. However, Pp MYB 10.1 did not co‐segregate with the blood‐flesh trait. The blood‐flesh trait was mapped to a 200‐kb interval on peach linkage group (LG) 5. Within this interval, a gene encoding a NAC domain transcription factor (TF) was found to be highly up‐regulated in blood‐fleshed peaches when compared with non‐red‐fleshed peaches. This NAC TF, designated BLOOD (BL), acts as a heterodimer with Pp NAC 1 which shows high levels of expression in fruit at late developmental stages. We show that the heterodimer of BL and Pp NAC 1 can activate the transcription of Pp MYB 10.1, resulting in anthocyanin pigmentation in tobacco. Furthermore, silencing the BL gene reduces anthocyanin pigmentation in blood‐fleshed peaches. The transactivation activity of the BL‐Pp NAC 1 heterodimer is repressed by a SQUAMOSA promoter‐binding protein‐like TF, Pp SPL 1. Low levels of Pp MYB 10.1 expression in fruit at early developmental stages is probably attributable to lower levels of expression of Pp NAC 1 plus the presence of high levels of repressors such as Pp SPL 1. We present a mechanism whereby BL is the key gene for the blood‐flesh trait in peach via its activation of Pp MYB 10.1 in maturing fruit. Partner TF s such as basic helix–loop‐helix proteins and NAC 1 are required, as is the removal of transcriptional repressors.
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Cites
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Langmead, B., Trapnell, C., Pop, M., & Salzberg, S. L. (2009) · Genome Biology · doi:10.1186/gb-2009-10-3-r25 · Cited by 21,849
TopHat: discovering splice junctions with RNA-Seq
Trapnell, C., Pachter, L., & Salzberg, S. L. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp120 · Cited by 11,617
Gonzalez, A., Zhao, M., Leavitt, J. M., & Lloyd, A. M. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03373.x · Cited by 1,896
Hellens, R. P., Allan, A. C., Friel, E. N., Bolitho, K., Grafton, K., Templeton, M. D., Karunairetnam, S., Gleave, A. P., & Laing, W. A. (2005) · Plant Methods · doi:10.1186/1746-4811-1-13 · Cited by 1,823
Self-citationAnalysis and biological activities of anthocyanins
Kong, J.-M., Chia, L.-S., Goh, N.-K., Chia, T.-F., & Brouillard, R. (2003) · Phytochemistry · doi:10.1016/s0031-9422(03)00438-2 · Cited by 1,682
THE GENETICS AND BIOCHEMISTRY OF FLORAL PIGMENTS
Grotewold, E. (2006) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.57.032905.105248 · Cited by 1,587
Firefly Luciferase Complementation Imaging Assay for Protein-Protein Interactions in Plants
Chen, H., Zou, Y., Shang, Y., Lin, H., Wang, Y., Cai, R., Tang, X., & Zhou, J.-M. (2008) · Plant Physiology · doi:10.1104/pp.107.111740 · Cited by 1,525
NAC transcription factors: structurally distinct, functionally diverse
Olsen, A. N., Ernst, H. A., Leggio, L. L., & Skriver, K. (2005) · Trends in Plant Science · doi:10.1016/j.tplants.2004.12.010 · Cited by 1,503
Activation Tagging Identifies a Conserved MYB Regulator of Phenylpropanoid Biosynthesis
Borevitz, J. O., Xia, Y., Blount, J., Dixon, R. A., & Lamb, C. (2000) · The Plant Cell · doi:10.1105/tpc.12.12.2383 · Cited by 1,450
Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10
Espley, R. V., Hellens, R. P., Putterill, J., Stevenson, D. E., Kutty‐Amma, S., & Allan, A. C. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02964.x · Cited by 1,392
Self-citationComprehensive Analysis of NAC Family Genes in Oryza sativa and Arabidopsis thaliana
Ooka, H. (2003) · DNA Research · doi:10.1093/dnares/10.6.239 · Cited by 1,165
Initiative, T. I. P. G., Verde, I., Abbott, A. G., Scalabrin, S., Jung, S., Shu, S., Marroni, F., Zhebentyayeva, T., Dettori, M. T., Grimwood, J., et al. (2013) · Nature Genetics · doi:10.1038/ng.2586 · Cited by 1,154
Retrotransposon-Induced Mutations in Grape Skin Color
Kobayashi, S., Goto-Yamamoto, N., & Hirochika, H. (2004) · Science · doi:10.1126/science.1095011 · Cited by 988
Qi, T., Song, S., Ren, Q., Wu, D., Huang, H., Chen, Y., Fan, M., Peng, W., Ren, C., & Xie, D. (2011) · The Plant Cell · doi:10.1105/tpc.111.083261 · Cited by 975
Gou, J.-Y., Felippes, F. F., Liu, C.-J., Weigel, D., & Wang, J.-W. (2011) · The Plant Cell · doi:10.1105/tpc.111.084525 · Cited by 953
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development
Xie, Q., Frugis, G., Colgan, D., & Chua, N.-H. (2000) · Genes & Development · doi:10.1101/gad.852200 · Cited by 918
Johnson, C. S., Kolevski, B., & Smyth, D. R. (2002) · The Plant Cell · doi:10.1105/tpc.001404 · Cited by 775
Butelli, E., Licciardello, C., Zhang, Y., Liu, J., Mackay, S., Bailey, P., Reforgiato-Recupero, G., & Martin, C. (2012) · The Plant Cell · doi:10.1105/tpc.111.095232 · Cited by 766
Selection of reliable reference genes for gene expression studies in peach using real-time PCR
Tong, Z., Gao, Z., Wang, F., Zhou, J., & Zhang, Z. (2009) · BMC Molecular Biology · doi:10.1186/1471-2199-10-71 · Cited by 672
Li, Y.-Y., Mao, K., Zhao, C., Zhao, X.-Y., Zhang, H.-L., Shu, H.-R., & Hao, Y.-J. (2012) · Plant Physiology · doi:10.1104/pp.112.199703 · Cited by 489
The CUP-SHAPED COTYLEDON3 Gene Is Required for Boundary and Shoot Meristem Formation in Arabidopsis
Vroemen, C. W., Mordhorst, A. P., Albrecht, C., Kwaaitaal, M. A. C. J., & de Vries, S. C. (2003) · The Plant Cell · doi:10.1105/tpc.012203 · Cited by 480
Shin, J., Park, E., & Choi, G. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2006.03021.x · Cited by 444
Maier, A., Schrader, A., Kokkelink, L., Falke, C., Welter, B., Iniesto, E., Rubio, V., Uhrig, J. F., Hülskamp, M., & Hoecker, U. (2013) · The Plant Journal · doi:10.1111/tpj.12153 · Cited by 437
Shin, D. H., Choi, M., Kim, K., Bang, G., Cho, M., Choi, S.-B., Choi, G., & Park, Y.-I. (2013) · FEBS Letters · doi:10.1016/j.febslet.2013.03.037 · Cited by 412
Hibara, K.-I., Karim, M. R., Takada, S., Taoka, K.-I., Furutani, M., Aida, M., & Tasaka, M. (2006) · The Plant Cell · doi:10.1105/tpc.106.045716 · Cited by 387
A Membrane-Bound NAC Transcription Factor Regulates Cell Division in Arabidopsis
Kim, Y.-S., Kim, S.-G., Park, J.-E., Park, H.-Y., Lim, M.-H., Chua, N.-H., & Park, C.-M. (2006) · The Plant Cell · doi:10.1105/tpc.106.043018 · Cited by 371
Chagné, D., Lin-Wang, K., Espley, R. V., Volz, R. K., How, N. M., Rouse, S., Brendolise, C., Carlisle, C. M., Kumar, S., De Silva, N., et al. (2012) · Plant Physiology · doi:10.1104/pp.112.206771 · Cited by 358
Self-citationNesi, N., Debeaujon, I., Jond, C., Stewart, A. J., Jenkins, G. I., Caboche, M., & Lepiniec, L. (2002) · The Plant Cell · doi:10.1105/tpc.004127 · Cited by 349
Hegedus, D., Yu, M., Baldwin, D., Gruber, M., Sharpe, A., Parkin, I., Whitwill, S., & Lydiate, D. (2003) · Plant Molecular Biology · doi:10.1023/b:plan.0000006944.61384.11 · Cited by 317
Apple skin patterning is associated with differential expression of MYB10
Telias, A., Lin-Wang, K., Stevenson, D. E., Cooney, J. M., Hellens, R. P., Allan, A. C., Hoover, E. E., & Bradeen, J. M. (2011) · BMC Plant Biology · doi:10.1186/1471-2229-11-93 · Cited by 289
Self-citationArabidopsis NAC Transcription Factor, ANAC078, Regulates Flavonoid Biosynthesis under High-light
Morishita, T., Kojima, Y., Maruta, T., Nishizawa-Yokoi, A., Yabuta, Y., & Shigeoka, S. (2009) · Plant and Cell Physiology · doi:10.1093/pcp/pcp159 · Cited by 280
Regulation of anthocyanin biosynthesis in peach fruits
Rahim, M. A., Busatto, N., & Trainotti, L. (2014) · Planta · doi:10.1007/s00425-014-2078-2 · Cited by 269
A SQUAMOSA MADS Box Gene Involved in the Regulation of Anthocyanin Accumulation in Bilberry Fruits
Jaakola, L., Poole, M., Jones, M. O., Kämäräinen-Karppinen, T., Koskimäki, J. J., Hohtola, A., Häggman, H., Fraser, P. D., Manning, K., King, G. J., et al. (2010) · Plant Physiology · doi:10.1104/pp.110.158279 · Cited by 263
Wang, Z., Meng, D., Wang, A., Li, T., Jiang, S., Cong, P., & Li, T. (2013) · Plant Physiology · doi:10.1104/pp.113.214700 · Cited by 250
Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple
Chagné, D., Carlisle, C. M., Blond, C., Volz, R. K., Whitworth, C. J., Oraguzie, N. C., Crowhurst, R. N., Allan, A. C., Espley, R. V., Hellens, R. P., et al. (2007) · BMC Genomics · doi:10.1186/1471-2164-8-212 · Cited by 218
Self-citationHickman, R., Hill, C., Penfold, C. A., Breeze, E., Bowden, L., Moore, J. D., Zhang, P., Jackson, A., Cooke, E., Bewicke‐Copley, F., et al. (2013) · The Plant Journal · doi:10.1111/tpj.12194 · Cited by 216
Shan, W., Kuang, J.-F., Chen, L., Xie, H., Peng, H.-H., Xiao, Y.-Y., Li, X.-P., Chen, W.-X., He, Q.-G., Chen, J.-Y., et al. (2012) · Journal of Experimental Botany · doi:10.1093/jxb/ers178 · Cited by 213
Sagasser, M., Lu, G.-H., Hahlbrock, K., & Weisshaar, B. (2002) · Genes & Development · doi:10.1101/gad.212702 · Cited by 213
Quilot, B., Wu, B. H., Kervella, J., G�nard, M., Foulongne, M., & Moreau, K. (2004) · Theoretical and Applied Genetics · doi:10.1007/s00122-004-1703-z · Cited by 193
How Can Research on Plants Contribute to Promoting Human Health?
Martin, C., Butelli, E., Petroni, K., & Tonelli, C. (2011) · The Plant Cell · doi:10.1105/tpc.111.083279 · Cited by 186
Falchi, R., Vendramin, E., Zanon, L., Scalabrin, S., Cipriani, G., Verde, I., Vizzotto, G., & Morgante, M. (2013) · The Plant Journal · doi:10.1111/tpj.12283 · Cited by 177
Dardick, C. D., Callahan, A. M., Chiozzotto, R., Schaffer, R. J., Piagnani, M. C., & Scorza, R. (2010) · BMC Biology · doi:10.1186/1741-7007-8-13 · Cited by 144
Pirona, R., Eduardo, I., Pacheco, I., Linge, C. D. S., Miculan, M., Verde, I., Tartarini, S., Dondini, L., Pea, G., Bassi, D., et al. (2013) · BMC Plant Biology · doi:10.1186/1471-2229-13-166 · Cited by 137
PHYLOGENETIC ANALYSES UNRAVEL THE EVOLUTIONARY HISTORY OF NAC PROTEINS IN PLANTS
Zhu, T., Nevo, E., Sun, D., & Peng, J. H. (2011) · Evolution · doi:10.1111/j.1558-5646.2011.01553.x · Cited by 118
Stevenson, D. E., Wibisono, R., Jensen, D. J. A., Stanley, R. A., & Cooney, J. M. (2006) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2006.03.006 · Cited by 115
Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes
Dare, A. P., Schaffer, R. J., Lin‐Wang, K., Allan, A. C., & Hellens, R. P. (2008) · Plant Methods · doi:10.1186/1746-4811-4-17 · Cited by 82
Self-citationWu, J., Zhao, G., Yang, Y., Wen-quan, L., Khan, M. A., Zhang, S., Gu, C., & Huang, W. (2012) · Tree Genetics & Genomes · doi:10.1007/s11295-012-0534-3 · Cited by 52
Self-citationMa, J., Li, J., Zhao, J., Zhou, H., Ren, F., Wang, L., Gu, C., Liao, L., & Han, Y. (2013) · Plant Molecular Biology Reporter · doi:10.1007/s11105-013-0650-8 · Cited by 48
Self-citationOlsen, A. N., Ernst, H. A., Leggio, L. L., Johansson, E., Larsen, S., & Skriver, K. (2003) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444903022029 · Cited by 31
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Naing, A. H., & Kim, C. K. (2018) · Plant Molecular Biology · doi:10.1007/s11103-018-0771-4 · Cited by 322
Li, Q., Kou, M., Li, C., & Zhang, Y.-G. (2021) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2020.11.035 · Cited by 30
Metadata
- Authors
- Zhou, H., Lin‐Wang, K., Wang, H., Gu, C., Dare, A. P., Espley, R. V., He, H., Allan, A. C., & Han, Y.
- Venue
- The Plant Journal
- Publisher
- Wiley
- Published
- 2015-03-04
- Volume
- 82
- Issue
- 1
- Pages
- 105-121
- ISSN
- 0960-7412 (ISSN-L)
- 1365-313X
- OpenAlex
- W2113707341
- Cited by
- 522
- References
- 49
- FWCI
- 10.04
- Type
- journal article
- Language
- en
- Open access
- bronze
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