Astrocytes and neurons share region-specific transcriptional signatures that confer regional identity to neuronal reprogramming
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Abstract
Region-specific gene expression shared with neurons imparts to astrocytes competence for region-specific neuronal reprogramming.
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These observations are consistent with the notion that astrocytes and neurons are derived from common regionally distinct progenitors and share common transcription factors for spatial patterning.
“These observations are consistent with the notion that astrocytes and neurons are derived from common regionally distinct progenitors and share common transcription factors for spatial patterning66,67.”
From A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain (2023) · cites this paper as [67]
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Cites
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Yu, G., Wang, L.-G., Han, Y., & He, Q.-Y. (2012) · OMICS: A Journal of Integrative Biology · doi:10.1089/omi.2011.0118 · Cited by 36,259 · see citing works
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Liao, Y., Smyth, G. K., & Shi, W. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btt656 · Cited by 27,219 · see citing works
Comprehensive Integration of Single-Cell Data
Stuart, T., Butler, A., Hoffman, P., Hafemeister, C., Papalexi, E., Mauck, W. M., Hao, Y., Stoeckius, M., Smibert, P., & Satija, R. (2019) · Cell · doi:10.1016/j.cell.2019.05.031 · Cited by 15,453 · see citing works
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Butler, A., Hoffman, P., Smibert, P., Papalexi, E., & Satija, R. (2018) · Nature Biotechnology · doi:10.1038/nbt.4096 · Cited by 13,174 · cited 1× · see citing works
“Cortical and thalamic scRNA-seq datasets were subsequently integrated as previously described (50).”
MethodMEME SUITE: tools for motif discovery and searching
Bailey, T. L., Boden, M., Buske, F. A., Frith, M., Grant, C. E., Clementi, L., Ren, J., Li, W. W., & Noble, W. S. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp335 · Cited by 10,648 · see citing works
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Yu, G., Wang, L.-G., & He, Q. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv145 · Cited by 4,399 · see citing works
Cahoy, J. D., Emery, B., Kaushal, A., Foo, L. C., Zamanian, J. L., Christopherson, K. S., Xing, Y., Lubischer, J. L., Krieg, P. A., Krupenko, S. A., et al. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.4178-07.2008 · Cited by 3,129 · see citing works
Molecular Architecture of the Mouse Nervous System
Zeisel, A., Hochgerner, H., Lönnerberg, P., Johnsson, A., Memic, F., van der Zwan, J., Häring, M., Braun, E., Borm, L. E., La Manno, G., et al. (2018) · Cell · doi:10.1016/j.cell.2018.06.021 · Cited by 2,995 · see citing works
Epigenetic memory in induced pluripotent stem cells
Kim, K., Doi, A., Wen, B., Ng, K., Zhao, R. C., Cahan, P., Kim, J., Aryee, M. J., Ji, H., Ehrlich, L. I. R., et al. (2010) · Nature · doi:10.1038/nature09342 · Cited by 2,311 · cited 1× · see citing works
“The fact that epigenetic configurations are heritable through cell divisions (4, 38, 39) might confer astrocytes with a specific and long-lasting regional differentiation potential as may occur during injury-induced neurogenesis (40, 41).”
BackgroundNeuronal specification in the spinal cord: inductive signals and transcriptional codes
Jessell, T. M. (2000) · Nature Reviews Genetics · doi:10.1038/35049541 · Cited by 2,089 · see citing works
Zhu, A., Ibrahim, J. G., & Love, M. I. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty895 · Cited by 2,011 · see citing works
Shared and distinct transcriptomic cell types across neocortical areas
Tasic, B., Yao, Z., Graybuck, L. T., Smith, K. A., Nguyen, T. N., Bertagnolli, D., Goldy, J., Garren, E., Economo, M. N., Viswanathan, S., et al. (2018) · Nature · doi:10.1038/s41586-018-0654-5 · Cited by 1,746 · see citing works
Tamamaki, N., Yanagawa, Y., Tomioka, R., Miyazaki, J., Obata, K., & Kaneko, T. (2003) · The Journal of Comparative Neurology · doi:10.1002/cne.10905 · Cited by 1,277 · cited 1× · see citing works
“The Gfap::Gfp line (16) (the Jackson Laboratory, stock number 003257) was in an FVB/N-Tg genetic background, the Gad67::Gfp line (43) was in C57BL/6J, and the R26tdTomato Cre-dependent line (the Jackson Laboratory, stock number 007908) and the Gbx2CreERT2/+ mouse line (18) were in an ICR/CD-1 genetic background.”
BackgroundSpatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
Nowakowski, T. J., Bhaduri, A., Pollen, A. A., Alvarado, B., Mostajo-Radji, M. A., Di Lullo, E., Haeussler, M., Sandoval-Espinosa, C., Liu, S. J., Velmeshev, D., et al. (2017) · Science · doi:10.1126/science.aap8809 · Cited by 964 · see citing works
Molecular logic of neocortical projection neuron specification, development and diversity
Greig, L. C., Woodworth, M. B., Galazo, M. J., Padmanabhan, H., & Macklis, J. D. (2013) · Nature Reviews Neuroscience · doi:10.1038/nrn3586 · Cited by 863 · see citing works
Identification of region-specific astrocyte subtypes at single cell resolution
Batiuk, M. Y., Martirosyan, A., Wahis, J., de Vin, F., Marneffe, C., Kusserow, C., Koeppen, J., Viana, J. F., Oliveira, J. F., Voet, T., et al. (2020) · Nature Communications · doi:10.1038/s41467-019-14198-8 · Cited by 805 · see citing works
Developmental genetics of vertebrate glial–cell specification
Rowitch, D., & Kriegstein, A. (2010) · Nature · doi:10.1038/nature09611 · Cited by 685 · see citing works
Local generation of glia is a major astrocyte source in postnatal cortex
Ge, W.-P., Miyawaki, A., Gage, F. H., Jan, Y. N., & Jan, L. Y. (2012) · Nature · doi:10.1038/nature10959 · Cited by 507 · cited 2× · see citing works
“At this developmental stage, retroviruses only transduce proliferative glia (17).”
BackgroundDevelopmental diversification of cortical inhibitory interneurons
Mayer, C., Hafemeister, C., Bandler, R. C., Machold, R., Batista Brito, R., Jaglin, X., Allaway, K., Butler, A., Fishell, G., & Satija, R. (2018) · Nature · doi:10.1038/nature25999 · Cited by 492 · see citing works
Bayraktar, O. A., Bartels, T., Holmqvist, S., Kleshchevnikov, V., Martirosyan, A., Polioudakis, D., Ben Haim, L., Young, A. M. H., Batiuk, M. Y., Prakash, K., et al. (2020) · Nature Neuroscience · doi:10.1038/s41593-020-0602-1 · Cited by 489 · see citing works
The Emerging Nature of Astrocyte Diversity
Khakh, B. S., & Deneen, B. (2019) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-070918-050443 · Cited by 485 · see citing works
Reversing a model of Parkinson's disease with in situ converted nigral neurons
Qian, H., Kang, X., Hu, J., Zhang, D., Liang, Z., Meng, F., Zhang, X., Xue, Y., Maimon, R., Dowdy, S. F., et al. (2020) · Nature · doi:10.1038/s41586-020-2388-4 · Cited by 480 · cited 1× · see citing works
“Last, the fine-grained heterogeneity of astrocytes between and within brain regions [this study and (10, 13)] may provide a basis for reconstructing diseased brain circuits that require the generation of multiple neuron types (30, 42), with a minimal number of molecular manipulations.”
BackgroundHirabayashi, Y., Suzki, N., Tsuboi, M., Endo, T. A., Toyoda, T., Shinga, J., Koseki, H., Vidal, M., & Gotoh, Y. (2009) · Neuron · doi:10.1016/j.neuron.2009.08.021 · Cited by 447 · cited 1× · see citing works
“Conversely, these region-specific genes apparently escape the long-term epigenetic repression that occurs at neuronal gene loci at the developmental switch from neurogenesis to gliogenesis (37, 38).”
BackgroundA latent neurogenic program in astrocytes regulated by Notch signaling in the mouse
Magnusson, J. P., Göritz, C., Tatarishvili, J., Dias, D. O., Smith, E. M. K., Lindvall, O., Kokaia, Z., & Frisén, J. (2014) · Science · doi:10.1126/science.346.6206.237 · Cited by 433 · see citing works
Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex
Telley, L., Agirman, G., Prados, J., Amberg, N., Fièvre, S., Oberst, P., Bartolini, G., Vitali, I., Cadilhac, C., Hippenmeyer, S., et al. (2019) · Science · doi:10.1126/science.aav2522 · Cited by 423 · see citing works
Generating Neuronal Diversity in the Mammalian Cerebral Cortex
Lodato, S., & Arlotta, P. (2015) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100814-125353 · Cited by 389 · see citing works
Epigenetic control of neural precursor cell fate during development
Hirabayashi, Y., & Gotoh, Y. (2010) · Nature reviews. Neuroscience · doi:10.1038/nrn2810 · Cited by 376 · cited 2× · see citing works
“The fact that epigenetic configurations are heritable through cell divisions (4, 38, 39) might confer astrocytes with a specific and long-lasting regional differentiation potential as may occur during injury-induced neurogenesis (40, 41).”
BackgroundIdentification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming
Gascón, S., Murenu, E., Masserdotti, G., Ortega, F., Russo, G. L., Petřík, D., Deshpande, A., Heinrich, C., Karow, M., Robertson, S. P., et al. (2015) · Cell stem cell · doi:10.1016/j.stem.2015.12.003 · Cited by 354 · see citing works
Self-citationHochstim, C., Deneen, B., Lukaszewicz, A., Zhou, Q., & Anderson, D. J. (2008) · Cell · doi:10.1016/j.cell.2008.02.046 · Cited by 331 · see citing works
Astrocyte-encoded positional cues maintain sensorimotor circuit integrity
Molofsky, A. V., Kelley, K. W., Tsai, H., Redmond, S., Chang, S., Madireddy, L., Chan, J. R., Baranzini, S. E., Ullian, E. M., & Rowitch, D. H. (2014) · Nature · doi:10.1038/nature13161 · Cited by 316 · see citing works
Early emergence of cortical interneuron diversity in the mouse embryo
Mi, D., Li, Z., Lim, L., Li, M., Moissidis, M., Yang, Y., Gao, T., Hu, T. X., Pratt, T., Price, D. J., et al. (2018) · Science · doi:10.1126/science.aar6821 · Cited by 259 · see citing works
Molyneaux, B. J., Goff, L. A., Brettler, A. C., Chen, H.-H., Brown, J. R., Hrvatin, S., Rinn, J. L., & Arlotta, P. (2014) · Neuron · doi:10.1016/j.neuron.2014.12.024 · Cited by 247 · see citing works
Prenatal activity from thalamic neurons governs the emergence of functional cortical maps in mice
Antón-Bolaños, N., Sempere-Ferràndez, A., Guillamón-Vivancos, T., Martini, F. J., Pérez-Saiz, L., Gezelius, H., Filipchuk, A., Valdeolmillos, M., & López‐Bendito, G. (2019) · Science · doi:10.1126/science.aav7617 · Cited by 170 · see citing works
Self-citationPrenatal thalamic waves regulate cortical area size prior to sensory processing
Moreno‐Juan, V., Filipchuk, A., Antón-Bolaños, N., Mezzera, C., Gezelius, H., Andrés, B., Rodríguez-Malmierca, L. M., Susín, R., Schaad, O., Iwasato, T., et al. (2017) · Nature Communications · doi:10.1038/ncomms14172 · Cited by 165 · cited 1× · see citing works
“In utero electroporation of StarTrack vectors For in utero electroporation, a procedure previously described was followed (51).”
MethodSelf-citationOnset of differentiation is post-transcriptionally controlled in adult neural stem cells
Baser, A., Skabkin, M. A., Kleber, S., Dang, Y., Balta, G. S. G., Kalamakis, G., Göpferich, M., Ibañez, D. C., Schefzik, R., Lopez, A. S., et al. (2019) · Nature · doi:10.1038/s41586-019-0888-x · Cited by 161 · cited 1× · see citing works
“S4C), which suggests that posttranscriptional regulations might take place (24).”
BackgroundInducing Different Neuronal Subtypes from Astrocytes in the Injured Mouse Cerebral Cortex
Mattugini, N., Bocchi, R., Scheuss, V., Russo, G. L., Torper, O., Lao, C. L., & Götz, M. (2019) · Neuron · doi:10.1016/j.neuron.2019.08.009 · Cited by 159 · see citing works
Region-Specific Transcriptional Control of Astrocyte Function Oversees Local Circuit Activities
Huang, A. Y.-S., Woo, J., Sardar, D., Lozzi, B., Huerta, N. A. B., Lin, C.-C. J., Felice, D., Jain, A., Paulucci-Holthauzen, A. A., & Deneen, B. (2020) · Neuron · doi:10.1016/j.neuron.2020.03.025 · Cited by 158 · cited 1× · see citing works
“Future experiments should decipher whether these genes may adopt different functions in astrocytes as compared to neurons or whether their shared expression might act as a code to facilitate region-specific interactions of astrocytes with their sibling neurons (35).”
BackgroundClonal Identity Determines Astrocyte Cortical Heterogeneity
García‐Marqués, J., & López‐Mascaraque, L. (2012) · Cerebral Cortex · doi:10.1093/cercor/bhs134 · Cited by 156 · see citing works
Self-citationNervous System Regionalization Entails Axial Allocation before Neural Differentiation
Metzis, V., Steinhauser, S., Pakanavicius, E., Gouti, M., Stamataki, D., Ivanovitch, K., Watson, T., Rayón, T., Mousavy-Gharavy, S. N., Lovell-Badge, R. H., et al. (2018) · Cell · doi:10.1016/j.cell.2018.09.040 · Cited by 153 · see citing works
Generation of subtype-specific neurons from postnatal astroglia of the mouse cerebral cortex
Heinrich, C., Gascón, S., Masserdotti, G., Lepier, A., Sánchez, R., Simon‐Ebert, T., Schroeder, T., Götz, M., & Berninger, B. (2011) · Nature Protocols · doi:10.1038/nprot.2010.188 · Cited by 144 · cited 1× · see citing works
“Astrocyte primary cultures Postnatal astroglia was cultured as previously described (52).”
MethodSelf-citationLodato, S., Molyneaux, B. J., Zuccaro, E., Goff, L. A., Chen, H.-H., Yuan, W., Meleski, A., Takahashi, E., Mahony, S., Rinn, J. L., et al. (2014) · Nature Neuroscience · doi:10.1038/nn.3757 · Cited by 135 · see citing works
Scandaglia, M., López‐Atalaya, J. P., Medrano-Fernandez, A., López-Cascales, M. T., del Blanco, B., Lipiński, M., Benito, E., Olivares, R., Iwase, S., Shi, Y., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.09.014 · Cited by 123 · see citing works
Self-citationPharmacologic fibroblast reprogramming into photoreceptors restores vision
Mahato, B., Kaya, K. D., Fan, Y., Sumien, N., Shetty, R. A., Zhang, W., Davis, D., Mock, T., Batabyal, S., Ni, A., et al. (2020) · Nature · doi:10.1038/s41586-020-2201-4 · Cited by 107 · see citing works
Chen, L., Guo, Q., & Li, J. Y. H. (2009) · Development · doi:10.1242/dev.030510 · Cited by 105 · cited 2× · see citing works
“To unveil region-specific genes shared among astrocytes and neurons of the corresponding regions, we first identified the most highly DEGs enriched in thalamic and cortical neurons, by comparing RNA-seq data of neurons isolated at P0 from a thalamic reporter line (Gbx2CreER::Tomato-floxed) (18) with a published datase…”
BackgroundStriatal astrocytes produce neuroblasts in an excitotoxic model of Huntington's disease
Nato, G., Caramello, A., Trova, S., Avataneo, V., Rolando, C., Taylor, V., Buffo, A., Peretto, P., & Luzzati, F. (2015) · Development · doi:10.1242/dev.116657 · Cited by 103 · cited 1× · see citing works
“The fact that epigenetic configurations are heritable through cell divisions (4, 38, 39) might confer astrocytes with a specific and long-lasting regional differentiation potential as may occur during injury-induced neurogenesis (40, 41).”
BackgroundControl of Neuronal Development by T-Box Genes in the Brain
Mihalas, A. B., & Hevner, R. F. (2016) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2016.08.001 · Cited by 61 · see citing works
Ontogenetic establishment of order-specific nuclear organization in the mammalian thalamus
Shi, W., Xianyu, A., Han, Z., Tang, X., Li, Z., Zhong, H., Mao, T., Huang, K., & Shi, S. (2017) · Nature Neuroscience · doi:10.1038/nn.4519 · Cited by 50 · cited 2× · see citing works
“S6G), extending and confirming previous studies (26, 27).”
BackgroundResultUbC-StarTrack, a clonal method to target the entire progeny of individual progenitors
Figueres‐Oñate, M., García‐Marqués, J., & López‐Mascaraque, L. (2016) · Scientific Reports · doi:10.1038/srep33896 · Cited by 49 · see citing works
Self-citationBluske, K. K., Vue, T. Y., Kawakami, Y., Taketo, M. M., Yoshikawa, K., Johnson, J. E. B., & Nakagawa, Y. (2012) · Development · doi:10.1242/dev.072314 · Cited by 46 · see citing works
Mallika, C., Guo, Q., & Li, J. Y. H. (2015) · Developmental Biology · doi:10.1016/j.ydbio.2015.08.010 · Cited by 43 · cited 1× · see citing works
“To directly test this, we examined whether coexpression of a thalamic fate determinant Gbx2 (29), a factor being shared between astrocytes and neurons of the thalamus, could induce an early and fast redirection of neuronal reprogramming of cortical astrocytes toward a thalamic identity (Fig.”
BackgroundIn vivo clonal analysis reveals spatiotemporal regulation of thalamic nucleogenesis
Wong, S. Z. H., Scott, E. P., Mu, W., Guo, X., Borgenheimer, E., Freeman, M., Ming, G., Wu, Q., Song, H., & Nakagawa, Y. (2018) · PLoS Biology · doi:10.1371/journal.pbio.2005211 · Cited by 41 · cited 2× · see citing works
“S6G), extending and confirming previous studies (26, 27).”
BackgroundResultGuo, Q., & Li, J. Y. H. (2019) · Development · doi:10.1242/dev.174284 · Cited by 26 · cited 1× · see citing works
“Our clonal analyses reveal that neurons and sibling astrocytes originating from the same thalamic progenitor clone populate very similar territories, respecting boundaries among thalamic nuclei, extending earlier observations of the existence of nucleus-specific progenitor domains in the thalamus (26, 27, 36).”
BackgroundGezelius, H., Moreno‐Juan, V., Mezzera, C., Thakurela, S., Rodríguez-Malmierca, L. M., Pistolic, J., Beneš, V., Tiwari, V. K., & López‐Bendito, G. (2016) · Cerebral Cortex · doi:10.1093/cercor/bhw290 · Cited by 17 · see citing works
Self-citationGillotin, S., & Guillemot, F. (2016) · BIO-PROTOCOL · doi:10.21769/bioprotoc.1846 · Cited by 3 · see citing works
Qian, H., Hu, J., Zhang, D., Meng, F., Zhang, X., Xue, Y., Devaraj, N. K., Dowdy, S. F., Mobley, W. C., Cleveland, D. W., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.06.028084 · Cited by 2 · see citing works
Nolte (2001) · doi:10.1002/1098-1136(20010101)33:1
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A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Yao, Z., van Velthoven, C. T. J., Kunst, M., Zhang, M., McMillen, D., Lee, C., Jung, W., Goldy, J., Abdelhak, A., Aitken, M., et al. (2023) · Nature · doi:10.1038/s41586-023-06812-z · Cited by 1,194 · see citing works
Herring, C. A., Simmons, R. K., Freytag, S., Poppe, D., Moffet, J. J. D., Pflueger, J., Buckberry, S., Vargas-Landín, D. B., Clément, O., Goñi, E., et al. (2022) · Cell · doi:10.1016/j.cell.2022.09.039 · Cited by 226 · see citing works
Direct neuronal reprogramming: Fast forward from new concepts toward therapeutic approaches
Bocchi, R., Masserdotti, G., & Götz, M. (2021) · Neuron · doi:10.1016/j.neuron.2021.11.023 · Cited by 128 · see citing works
Molecular and metabolic heterogeneity of astrocytes and microglia
Hasel, P., Aisenberg, W. H., Bennett, F. C., & Liddelow, S. A. (2023) · Cell Metabolism · doi:10.1016/j.cmet.2023.03.006 · Cited by 129 · see citing works
Lentini, C., d’Orange, M., Marichal, N., Trottmann, M.-M., Vignoles, R., Foucault, L., Verrier, C., Massera, C., Raineteau, O., Conzelmann, K.-K., et al. (2021) · Cell Stem Cell · doi:10.1016/j.stem.2021.09.002 · Cited by 114 · see citing works
Self-citationExtensive transcriptional and chromatin changes underlie astrocyte maturation in vivo and in culture
Lattke, M., Goldstone, R. J., Ellis, J. K., Boeing, S., Jurado‐Arjona, J., Marichal, N., MacRae, J. I., Berninger, B., & Guillemot, F. (2021) · Nature Communications · doi:10.1038/s41467-021-24624-5 · Cited by 99 · see citing works
Self-citationActivation of a neural stem cell transcriptional program in parenchymal astrocytes
Magnusson, J. P., Zamboni, M., Santopolo, G., Mold, J. E., Barrientos‐Somarribas, M., Talavera-López, C. N., Andersson, B., & Frisén, J. (2020) · eLife · doi:10.7554/elife.59733 · Cited by 90 · see citing works
CellDART: cell type inference by domain adaptation of single-cell and spatial transcriptomic data
Bae, S., Na, K. J., Koh, J., Lee, D. S., Choi, H., & Kim, Y. T. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac084 · Cited by 75 · see citing works
“In the brain, many cell types have their own regional identities, and the heterogeneous cells in each location shape distinct functional characteristics (42–44).”
BackgroundA critical period of translational control during brain development at codon resolution
Harnett, D., Ambrozkiewicz, M. C., Zinnall, U., Rusanova, A., Borisova, E., Drescher, A. N., Couce-Iglesias, M., Villamil, G., Dannenberg, R., Imami, K., et al. (2022) · Nature Structural & Molecular Biology · doi:10.1038/s41594-022-00882-9 · Cited by 68 · see citing works
“Although transcriptomes define broad classes of neurons, a striking conclusion from recent studies is the degree of homogeneity in mRNA pools between distinct neuronal lineages during prenatal differentiation 4,8 , in postnatal circuits 7 , and even between neurons and astrocytes 10 .”
Astrocyte heterogeneity reveals region-specific astrogenesis in the white matter
Bocchi, R., Thorwirth, M., Simon‐Ebert, T., Koupourtidou, C., Clavreul, S., Kolf, K., Vecchia, P. D., Bottes, S., Jessberger, S., Zhou, J., et al. (2025) · Nature Neuroscience · doi:10.1038/s41593-025-01878-6 · Cited by 66 · see citing works
A perspective on astrocyte regulation of neural circuit function and animal behavior
Hirrlinger, J., & Nimmerjahn, A. (2022) · Glia · doi:10.1002/glia.24168 · Cited by 55 · see citing works
Zenk, F. L., Fleck, J. S., Jansen, S. M. J., Kashanian, B., Eisinger, B. N., Santel, M., Dupré, J.-S., Camp, J. G., & Treutlein, B. (2024) · Nature Neuroscience · doi:10.1038/s41593-024-01652-0 · Cited by 52 · see citing works
Stogsdill, J. A., Harwell, C. C., & Goldman, S. A. (2023) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.15004 · Cited by 47 · see citing works
Talifu, Z., Li, J., Pan, Y., Ke, H., Zhang, C.-J., Xu, X., Gao, F., Yu, Y. H., Du, L.-J., & Li, J.-J. (2022) · Neural Regeneration Research · doi:10.4103/1673-5374.353482 · Cited by 48 · see citing works
Heterogeneity and Molecular Markers for CNS Glial Cells Revealed by Single-Cell Transcriptomics
Sun, J., Song, Y., Chen, Z., Qiu, J., Zhu, S., Wu, L., & Xing, L. (2021) · Cellular and Molecular Neurobiology · doi:10.1007/s10571-021-01159-3 · Cited by 48 · see citing works
Transcriptomic analyses of NeuroD1‐mediated astrocyte‐to‐neuron conversion
Ma, N., Puls, B., & Chen, G. (2022) · Developmental Neurobiology · doi:10.1002/dneu.22882 · Cited by 43 · see citing works
Geloso, M. C., Zupo, L., & Corvino, V. (2024) · Neurochemistry International · doi:10.1016/j.neuint.2024.105872 · Cited by 42 · see citing works
Kempf, J., Knelles, K., Hersbach, B. A., Petřík, D., Riedemann, T., Bednarova, V., Janjic, A., Simon‐Ebert, T., Enard, W., Smialowski, P., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109409 · Cited by 41 · see citing works
“cascades by the same TFs in astrocytes from different regions (Figure 6Q), resulting in the generation of different neurons, as reported for different brain regions including distinct thalamic nuclei in vitro and in vivo (Herrero-Navarro et al., 2021; Mattugini et al., 2019; Qian et al., 2020; Zhou et al., 2020).”
BackgroundCross-regional homeostatic and reactive glial signatures in multiple sclerosis
Trobisch, T., Zulji, A., Stevens, N. A., Schwarz, S., Wischnewski, S., Öztürk, M., Perales-Patón, J., Haeussler, M., Saez-Rodriguez, J., Velmeshev, D., et al. (2022) · Acta Neuropathologica · doi:10.1007/s00401-022-02497-2 · Cited by 40 · see citing works
Ascl1 and Ngn2 convert mouse embryonic stem cells to neurons via functionally distinct paths
Vainorius, G., Novatchkova, M., Michlits, G., Baar, J. C., Raupach, C., Lee, J., Yelagandula, R., Wernig, M., & Elling, U. (2023) · Nature Communications · doi:10.1038/s41467-023-40803-y · Cited by 38 · see citing works
Input-dependent segregation of visual and somatosensory circuits in the mouse superior colliculus
Guillamón-Vivancos, T., Aníbal-Martínez, M., Puche-Aroca, L., Moreno‐Bravo, J. A., Valdeolmillos, M., Martini, F. J., & López‐Bendito, G. (2022) · Science · doi:10.1126/science.abq2960 · Cited by 38 · see citing works
Self-citationSerra, I., Esparza, J., Delgado, L., Martín-Monteagudo, C., Puigròs, M., Podlesniy, P., Trullás, R., & Navarrete, M. (2022) · Nature Communications · doi:10.1038/s41467-022-33020-6 · Cited by 34 · see citing works
The secreted neuronal signal Spock1 promotes blood-brain barrier development
O’Brown, N. M., Patel, N. B., Hartmann, U., Klein, A. M., Gu, C., & Megason, S. G. (2023) · Developmental Cell · doi:10.1016/j.devcel.2023.06.005 · Cited by 33 · see citing works
Yang, R., Chai, R., Pan, J.-Y., Pan, J., Xia, P.-H., Wang, Y.-K., Chen, Y., Li, Y., Wu, J., & Chen, G. (2022) · Neural Regeneration Research · doi:10.4103/1673-5374.346463 · Cited by 30 · see citing works
Neuronal replacement: Concepts, achievements, and call for caution
Götz, M., & Bocchi, R. (2021) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2021.03.014 · Cited by 29 · see citing works
Schweingruber, C., & Hedlund, E. (2022) · Biology · doi:10.3390/biology11081191 · Cited by 29 · see citing works
“that neurons and glial cells show shared region-specificity [151].”
BackgroundReprogramming cellular identity in vivo
Leaman, S., Marichal, N., & Berninger, B. (2022) · Development · doi:10.1242/dev.200433 · Cited by 22 · see citing works
Self-citationMultifarious astrocyte–neuron dialog in shaping neural circuit architecture
Ngoc, K. H., Jeon, Y., Ko, J., & Um, J. W. (2024) · Trends in Cell Biology · doi:10.1016/j.tcb.2024.05.002 · Cited by 23 · see citing works
Two-photon live imaging of direct glia-to-neuron conversion in the mouse cortex
Xiang, Z., He, S., Chen, R., Liu, S., Liu, M., Xu, L., Zheng, J., Jiang, Z., Ma, L., Sun, Y., et al. (2023) · Neural Regeneration Research · doi:10.4103/1673-5374.386401 · Cited by 19 · see citing works
“…processes into neuronal processes suggests that local neurons and astrocytes may share certain commonalities, which is supported by a recent study reporting that astrocytes are more likely to be converted into local neuron types during in vivo reprogramming (Herrero-Navarro et al., 2021).”
ResultDual lineage origins contribute to neocortical astrocyte diversity
Zhou, J., Vitali, I., Roig‐Puiggros, S., Javed, A., Cantando, I., Puglisi, M., Bezzi, P., Jabaudon, D., Mayer, C., & Bocchi, R. (2025) · Nature Communications · doi:10.1038/s41467-025-61829-4 · Cited by 31 · see citing works
Spatial and Temporal Diversity of Astrocyte Phenotypes in Spinocerebellar Ataxia Type 1 Mice
Rosa, J. S., Hamel, K. A., Sheeler, C. A., Borgenheimer, E., Gilliat, S., Soles, A., Ghannoum, F. J., Sbrocco, K., Handler, H. P., Rainwater, O., et al. (2022) · Cells · doi:10.3390/cells11203323 · Cited by 19 · see citing works
“Differences in the activity and metabolic needs of neurons across and within brain regions indicate the heterogeneous and region-specific activity of astrocytes [8][9][10][11][12][13][14].”
BackgroundSensory modality-specific wiring of thalamocortical circuits
Guillamón-Vivancos, T., Aníbal-Martínez, M., Puche-Aroca, L., Martini, F. J., & López‐Bendito, G. (2025) · Nature reviews. Neuroscience · doi:10.1038/s41583-025-00945-y · Cited by 18 · see citing works
“Recent work by Herrero-Navarro and colleagues 35 highlighted that both thalamic neurons and astrocytes share a common transcriptional identity rooted in their progenitors.”
Self-citationTherapeutic Potential of PTB Inhibition Through Converting Glial Cells to Neurons in the Brain
Fu, X.-D., & Mobley, W. C. (2023) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-083022-113120 · Cited by 16 · see citing works
β-Adrenergic Signaling Promotes Morphological Maturation of Astrocytes in Female Mice
Rosenberg, M. F., Godoy, M. I., Wade, S. D., Paredes, M. F., Zhang, Y., & Molofsky, A. V. (2023) · Journal of Neuroscience · doi:10.1523/jneurosci.0357-23.2023 · Cited by 16 · see citing works
Sculpting Astrocyte Diversity through Circuits and Transcription
Cheng, Y.-T., Woo, J., & Deneen, B. (2022) · The Neuroscientist · doi:10.1177/10738584221082620 · Cited by 15 · see citing works
Baranes, K., Hastings, N., Rahman, S. M. J., Poulin, N., Tavares, J. M., Kuan, W., Syed, N., Kunz, M., Blighe, K., Belgard, T. G., et al. (2023) · Glia · doi:10.1002/glia.24372 · Cited by 14 · see citing works
Zhao, Y., Li, X., Tang, Y.-X., Talukder, M., Zhao, Y. P., & Li, J. (2023) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.3c02963 · Cited by 15 · see citing works
Application and prospects of somatic cell reprogramming technology for spinal cord injury treatment
Yang, R., Pan, J., Wang, Y., Xia, P.-H., Tai, M., Jiang, Z., & Chen, G. (2022) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2022.1005399 · Cited by 15 · see citing works
Direct In Vitro Reprogramming of Astrocytes into Induced Neurons
Sharif, N., Calzolari, F., & Berninger, B. (2021) · Methods in molecular biology · doi:10.1007/978-1-0716-1601-7_2 · Cited by 14 · see citing works
Self-citationGalante, C., Marichal, N., Scarante, F. F., Ghayad, L. M., Shi, Y., Schuurmans, C. J., Berninger, B., & Péron, S. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2022.919462 · Cited by 13 · see citing works
Self-citationMcDowall, S., Bagda, V., Hodgetts, S. I., Mastaglia, F. L., & Li, D. (2024) · Translational Neurodegeneration · doi:10.1186/s40035-024-00450-9 · Cited by 14 · see citing works
Francistiová, L., Vörös, K., Lovász, Z., Dinnyés, A., & Kobolák, J. (2022) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2021.793769 · Cited by 14 · see citing works
Astrocytes as essential time‐keepers of the central pacemaker
Astiz, M., Delgado‐García, L. M., & López‐Mascaraque, L. (2021) · Glia · doi:10.1002/glia.24121 · Cited by 12 · see citing works
Self-citationAstrocyte allocation during brain development is controlled by Tcf4-mediated fate restriction
Zhang, Y., Li, D., Cai, Y., Zou, R., Zhang, Y., Deng, X., Wang, Y., Tang, T., Ma, Y., Wu, F., et al. (2024) · The EMBO Journal · doi:10.1038/s44318-024-00218-x · Cited by 11 · see citing works
Felske, T., Tocco, C., Péron, S., Harb, K., Alfano, C., Galante, C., Berninger, B., & Studer, M. (2023) · PLoS Biology · doi:10.1371/journal.pbio.3002237 · Cited by 11 · see citing works
Self-citationSingle-Cell RNA-seq reveals transcriptomic modulation of Alzheimer’s disease by activated protein C
Fatmi, M. K., Wang, H., Slotabec, L. A., Wen, C., Seale, B. C., Zhao, B., & Li, J. (2024) · Aging · doi:10.18632/aging.205624 · Cited by 10 · see citing works
Milne, S. M., Lahiri, A., Sanchez, C. L., Marshall, M. J., Jahan, I., & Meares, G. P. (2024) · Scientific Reports · doi:10.1038/s41598-024-63877-0 · Cited by 10 · see citing works
“While astrocytes have been analyzed by FACS and flow cytometry in many previous studies 72,82–86 , this could represent a limitation in our study.”
ResultBrain‐Wide Neuroregenerative Gene Therapy Improves Cognition in a Mouse Model of Alzheimer's Disease
Wu, Z., Xu, L., Xie, Y., Sambangi, A., Swaminathan, S., Pei, Z., Ji, W., Li, Z., Guo, Y., Li, Z., et al. (2025) · Advanced Science · doi:10.1002/advs.202410080 · Cited by 10 · see citing works
ATP Metabolism of Astrocytes: Consumption, Regeneration and Restoration
Dringen, R., Karger, G., Winkler, U., & Hirrlinger, J. (2025) · Neurochemical Research · doi:10.1007/s11064-025-04604-7 · Cited by 10 · see citing works
Dennison, R., Usuga, E., Chen, H., Paul, J. Z., Arbelaez, C. A., & Teng, Y. D. (2023) · Cells · doi:10.3390/cells12040618 · Cited by 11 · see citing works
Update for astrocytomas: medical and surgical management considerations
Willman, M., Willman, J., Figg, J., Dioso, E., Sriram, S., Olowofela, B. O., Chacko, K. M., Hernandez, J. S., & Lucke-Wold, B. P. (2023) · Exploration of neuroscience · doi:10.37349/en.2023.00009 · Cited by 11 · see citing works
“The exact function and morphology of the astrocyte may be primarily determined by the spatial domain the cell occupies within the brain and the surrounding population of astrocytes [6, 7].”
BackgroundPatterning the cerebral cortex into distinct functional domains during development
Appan, D., Hsu, S.-M., Hsu, W.-H., & Chou, S. (2023) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2023.102698 · Cited by 14 · see citing works
Gene Expression at the Tripartite Synapse: Bridging the Gap Between Neurons and Astrocytes
Imrie, G., Gray, M. B., Raghuraman, V., & Farhy-Tselnicker, I. (2024) · Advances in neurobiology · doi:10.1007/978-3-031-64839-7_5 · Cited by 9 · see citing works
A prenatal window for enhancing spatial resolution of cortical barrel maps
Aníbal-Martínez, M., Puche-Aroca, L., Pérez-Montoyo, E., Pumo, G., Madrigal, M. P., Rodríguez-Malmierca, L. M., Martini, F. J., Rijli, F. M., & López-Bendito, G. (2025) · Nature Communications · doi:10.1038/s41467-025-57052-w · Cited by 3 · see citing works
Self-citationReactive astrocytes generated from human iPSC are pro-inflammatory and display altered metabolism
McComish, S. F., O’Sullivan, J., Copas, A. N. M., Imiolek, M., Boyle, N. T., Crompton, L., Lane, J. D., & Caldwell, M. A. (2024) · Experimental Neurology · doi:10.1016/j.expneurol.2024.114979 · Cited by 8 · see citing works
Cell fate acquisition and reprogramming by the proneural transcription factor ASCL1
Lundie-Brown, J., Puletti, F., Philpott, A., & Azzarelli, R. (2025) · Open Biology · doi:10.1098/rsob.250018 · Cited by 8 · see citing works
“Region-specific differences in the glial cells of origin were also preserved in neuronal reprogramming experiments with NEUROG2 [144].”
Yamamoto, M., & Takano, T. (2025) · Cells · doi:10.3390/cells14241936 · Cited by 11 · see citing works
Livingston, J. M., Lee, T. T., Enbar, T., Daniele, E., Phillips, C., Krassikova, A., Bang, K. W. A., Kortebi, I., Donville, B., Ibragimov, O. S., et al. (2024) · Biomedicines · doi:10.3390/biomedicines12030663 · Cited by 8 · see citing works
Identification and validation of novel engineered AAV capsid variants targeting human glia
Giacomoni, J., Åkerblom, M., Habekost, M., Fiorenzano, A., Kajtez, J., Davidsson, M., Parmar, M., & Björklund, T. (2024) · Frontiers in Neuroscience · doi:10.3389/fnins.2024.1435212 · Cited by 7 · see citing works
Dual lineage origins of neocortical astrocytesPreprint
Zhou, J., Vitali, I., Roig‐Puiggros, S., Javed, A., Jabaudon, D., Mayer, C., & Bocchi, R. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.12.557313 · Cited by 7 · see citing works
Sartoretti, M. M., Campetella, C. A., & Lanuza, G. M. (2022) · Development · doi:10.1242/dev.200750 · Cited by 6 · see citing works
Maddhesiya, P., Lepko, T., Steiner-Mezzardi, A., Schneider, J., Schwarz, V., Merl‐Pham, J., Berger, F., Hauck, S. M., Ronfani, L., Bianchi, M. E., et al. (2025) · Genome biology · doi:10.1186/s13059-025-03556-z · Cited by 5 · see citing works
“In addition to several factors associated with chromatin, microRNAs and small molecules have been found to improve the conversion efficiency and maturation status of reprogrammed neurons despite being unable to induce conversion on their own [12, 15, 32, 33].”
Kang, H., Liu, Q., Seim, I., Zhang, W., Li, H., Gao, H., Lin, W., Lin, M., Zhang, P., Zhang, Y., et al. (2023) · Molecular Ecology Resources · doi:10.1111/1755-0998.13775 · Cited by 5 · see citing works
“MEIS2 has roles in embryonic and adult neurogenesis and its high expression in astrocytes agrees with recent transcriptome studies on rats (Zhou et al., 2022) and mice (Herrero-Navarro et al., 2021).”
BackgroundCellular identity through the lens of direct lineage reprogramming
Falk, S., Han, D., & Karow, M. (2021) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2021.06.015 · Cited by 5 · see citing works
Self-citationRe-Activation of Neurogenic Niches in Aging BrainPreprint
Maimon, R., Chillón-Marinas, C., Vazquez‐Sanchez, S., Kern, C., Jenie, I., Malukhina, K., Moore, S. R., Cui, J., Goginashvili, A., Moghadami, S., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.01.27.575940 · Cited by 5 · see citing works
Lu, Z., Wang, C., Zhu, Y., Zhao, J., Gu, Y., Zhu, X., Liao, W., Zhu, J., Jiang, R., Feng, S., et al. (2026) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2026.106472 · Cited by 4 · see citing works
Curing the brain: in search for new astrocyte-specific therapies
Verkhratsky, A., Lee, C. J., Chun, H., Göritz, C., Harkany, T., Lee, J., Lee, S., Lindskog, M., Koh, W., Mulder, J., et al. (2026) · Experimental & Molecular Medicine · doi:10.1038/s12276-026-01712-4 · Cited by 5 · see citing works
Protocol for the purification and transcriptomic analysis of mouse astrocytes using GFAT
Labarta-Bajo, L., Deng, J., Contreras, M., & Allen, N. J. (2023) · STAR Protocols · doi:10.1016/j.xpro.2023.102599 · Cited by 5 · see citing works
Vierl, F., Kaur, M., & Götz, M. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.698002 · Cited by 4 · see citing works
Stifani, S. (2021) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2021.707861 · Cited by 4 · see citing works
Lineage Relationships Between Subpallial Progenitors and Glial Cells in the Piriform Cortex
Sánchez‐González, R., & López‐Mascaraque, L. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2022.825969 · Cited by 4 · see citing works
“…anterior PC. Piriform cortex neurons originate at the earliest stages of mouse telencephalic development as revealed through tritiated thymidine (Hinds and Angevine, 1965; Bayer, 1986; Frontiers in Neuroscience | www.frontiersin.org 1 March 2022 | Volume 16 | Article 825969 Valverde and…”
BackgroundSelf-citationCell Fate of Retinal Progenitor Cells: In Ovo UbC-StarTrack Analysis
Olmos-Carreño, C. L., Figueres‐Oñate, M., Scicolone, G. E., & López‐Mascaraque, L. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232012388 · Cited by 4 · see citing works
Self-citationÖzkan, A., Padmanabhan, H. K., Shipman, S. L., Azim, E., Kumar, P., Sadegh, C., Başak, A. N., & Macklis, J. D. (2024) · eLife · doi:10.7554/elife.100340 · Cited by 5 · see citing works
Reisman, S. J., Halabi, D., Miller, S. E., Song, L., Geraghty, S., Sangvai, N., Rice, G., Safi, A., Crawford, G. E., & Gersbach, C. A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.11.681828 · Cited by 4 · see citing works
Zhou, J., & Bocchi, R. (2026) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2026.1787840 · Cited by 3 · see citing works
Rogic, S., Mancarci, B. O., Xu, B., Xiao, A., Yan, C., & Pavlidis, P. (2026) · Database J. Biol. Databases Curation · doi:10.1093/database/baag041 · Cited by 1 · see citing works
“However, the Methods section of the corresponding paper [ 19 ] identifies the strain more precisely as FVB/N, which our curators missed.”
Zhou, Y., Zhang, K., Wang, F., Chen, J., Chen, S., Wu, M., Lai, M., Zhang, Y., & Zhou, W. (2023) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2023.1174341 · Cited by 3 · see citing works
“Existing experimental results suggest that in different brain regions, astrocytes have different transcriptional and proteomic environments, as well as region-specific neural transcription factors, which lead to the transdifferentiation of astrocytes into different subtype-specific neurons after reprogramming (Mattugi…”
BackgroundPortela-Lomba, M., Simón, D., Callejo-Móstoles, M., de la Fuente, G., de Sevilla, D. F., García‐Escudero, V., Moreno-Flores, M. T., & Sierra, J. (2024) · Cell Death and Disease · doi:10.1038/s41419-024-06862-9 · Cited by 3 · see citing works
“pCAG-Ngn2-IRES-GFP (LV-Ngn2) (Herrero-Navarro et al., 2021) was kindly supplied by Dr.”
MethodNeonatal Brain Injury Triggers Niche-Specific Changes to Cellular Biogeography
Tahmasian, N., Feng, M. Y., Arbabi, K., Rusu, B., Cao, W., Kukreja, B., Lubotzky, A., Wainberg, M., Tripathy, S. J., & Kalish, B. T. (2024) · eNeuro · doi:10.1523/eneuro.0224-24.2024 · Cited by 3 · see citing works
Wang, X., Zhang, H.-Y., Wan, Z., Li, X., Ibáñez, C. F., & Xie, M. (2025) · BMC Biology · doi:10.1186/s12915-025-02230-x · Cited by 3 · see citing works
“Such phenomenon may be explained by the regional specification for astro-cyte-to-neuron reprogramming as previously described [33].”
Péron, S., Miyakoshi, L. M., Brill, M. S., Manzano-Franco, D., Serrano-López, J., Fan, W., Marichal, N., Ghanem, A., Conzelmann, K., Karow, M., et al. (2023) · Stem Cell Reports · doi:10.1016/j.stemcr.2023.10.019 · Cited by 3 · see citing works
Self-citationEarly lineage divergence segregates sensory and non-sensory thalamic circuitsPreprint
Puche-Aroca, L., Andrés-Bayón, B., Wilson, E. S., Javed, A., Torregrosa-Mira, A., López‐Atalaya, J. P., & López‐Bendito, G. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.17.665342 · Cited by 3 · see citing works
“Interrogation of the dLG-specific GRN revealed that Sp9 regulates a cascade of transcriptional targets (either activating or repressing) associated with visual thalamic identity 28 , including Gbx2 , Zic1, Zic4, Pou2f2 and Lhx9 (Fig.”
Self-citationCerrato, V., Turrini, G., Vitali, I., Xiong, B., Solanelles-Farré, L., Lopes, A., Magrinelli, E., Bocchi, R., Götz, M., Fischer-Sternjak, J., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.17.665323 · Cited by 3 · see citing works
Direct Neural Reprogramming in situ: Existing Approaches and Their Optimization
Dokukin, N. V., Chudakova, D. A., Shkap, M. O., Kovalchuk, A. M., Kibirsky, P. D., & Baklaushev, V. P. (2025) · Biochemistry (Moscow) · doi:10.1134/s000629792460426x · Cited by 2 · see citing works
Jiang, H., Qi, H., Tang, A., Hu, S., & Lai, J. (2025) · Ageing Research Reviews · doi:10.1016/j.arr.2025.102808 · Cited by 2 · see citing works
Peña-Ortiz, M. Á., Sunstrum, J. K., Ghahramani, A., McConkey, H., Dumeaux, V., Inoue, W., & Bérubé, N. G. (2025) · Glia · doi:10.1002/glia.70098 · Cited by 2 · see citing works
Brain renin–angiotensin system in the injured brain
Ramos, A. J. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-99618-1.00016-7 · Cited by 2 · see citing works
Inducing Neural Regeneration from Glia Using Proneural bHLH Transcription Factors
Todd, L. J. (2023) · Advances in experimental medicine and biology · doi:10.1007/978-3-031-27681-1_84 · Cited by 2 · see citing works
Dlx2 reprograms the transcriptome and laminar position of glia-derived Ascl1-induced interneuronsPreprint
Cooper, A., Garcia-Mora, A., Herrera-Oropeza, G., Beltrán-Arranz, A., Marichal, N., Shi, Y., Leaman, S., Gonzalez, K. L., Strom, M., Hamid, F., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.02.697435 · Cited by 2 · see citing works
Self-citationFunctional recruitment of astrocyte-derived neurons into the mouse visual cortexPreprint
Leaman, S., Ferreira, F. M., Dong, L., Beltrán-Arranz, A., Jurado‐Arjona, J., Garcia-Mora, A., Cooper, A., Treder, N., Fakhira, S., Sreenivasan, V., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.25.701593 · Cited by 2 · see citing works
Self-citationReisman, S. J., Zhu, W., Miller, S. E., Halabi, D., Sangvai, N., Crawford, G. E., Gordân, R., & Gersbach, C. A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.01.703129 · Cited by 2 · see citing works
Reversal of Postnatal Brain Astrocytes and Ependymal Cells towards a Progenitor Phenotype in Culture
Kakogiannis, D., Kourla, M., Dimitrakopoulos, D., & Kazanis, I. (2024) · Cells · doi:10.3390/cells13080668 · Cited by 1 · see citing works
“Based on recent experimental work showing that astrocytes, at different anatomical positions, express genes that mark local populations of neurons [14], we looked for the expression of genes, such as Tbr1 , Pitx3 , and Gbx2 , that act to determine and specify cortical, nigral, and thalamic neurons,…”
BackgroundStarTrack: Mapping Cellular Fates with Inheritable Color Codes
Figueres‐Oñate, M., García‐Marqués, J., Ojalvo‐Sanz, A. C., & López‐Mascaraque, L. (2025) · Methods in molecular biology · doi:10.1007/978-1-0716-4310-5_16 · Cited by 1 · see citing works
Self-citationNeuropeptide receptors as entry points for developmental vulnerability to drug abuse
Harkany, T., Hevesi, Z., & Hökfelt, T. (2025) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2025.103125 · Cited by 1 · see citing works
Beyond the canonical niche: how astrocytes carried neurogenic potential into the brain parenchyma
Fogli, M., Nato, G., Peretto, P. M., Buffo, A., & Luzzati, F. (2026) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2025.1737065 · Cited by 2 · see citing works
Astrocyte Regulation of Spinal Circuit Function
Duff, M. K., Li, M. J., & Nimmerjahn, A. (2026) · Journal of Neurochemistry · doi:10.1111/jnc.70366 · Cited by 1 · see citing works
“…can exist as heterogeneous subpopulations both between regions of the CNS—for example, astrocytes in the neo-cortex versus in the thalamus (Herrero-Navarro et al. 2021)— and within the same region (Bayraktar et al. 2020; De Ceglia et al. 2023; Martín et al. 2015; Martin-Fernandez et al.…”
A 2026 perspective on neural stem cells and glial plasticity
Puletti, F., Lloret-Fernández, C., Lorenz, A., Cao, C., Poole, R. J., & Azzarelli, R. (2026) · Trends in Cell Biology · doi:10.1016/j.tcb.2026.05.001 · Cited by 1 · see citing works
Grochowska, M. M., Ferraro, F., Mascaro, A. C., Natale, D., Winkelaar, A. B., Boumeester, V., Breedveld, G. J., Bonifati, V., & Mandemakers, W. J. (2023) · Disease Models & Mechanisms · doi:10.1242/dmm.049980 · Cited by 1 · see citing works
“Studies performed in various brain regions have demonstrated that astrocytes and neurons derived from a common progenitor show a shared region-specific molecular signature, which might act as a code for region-specific interactions (Herrero-Navarro et al., 2021).”
Cha, J., Zeng, P., Zong, H., Zhao, J., Chen, J., Zuo, H., Zhang, B., Shi, C., Li, J., Hua, Q., et al. (2025) · Molecular Biology Reports · doi:10.1007/s11033-025-10309-5 · Cited by 1 · see citing works
“Astrocytes of distinct brain regions have region-specific transcriptional signatures that confer regional identity to neuronal reprogramming in vivo [12].”
In situ neuroregeneration: frontiers and therapeutic prospects
Wang, Q., Li, W., Lei, W., Chen, W., Zheng, J., Xiang, Z., MinHui, L. I. U., He, Q., Xu, L., Li, Z., et al. (2021) · Scientia Sinica Vitae · doi:10.1360/ssv-2021-0024 · Cited by 1 · see citing works
- Authors
- Herrero-Navarro, Á., Puche-Aroca, L., Moreno-Juan, V., Sempere-Ferràndez, A., Espinosa, A., Susín, R., Torres-Masjoan, L., Leyva-Díaz, E., Karow, M., Figueres-Oñate, M., López-Mascaraque, L., López-Atalaya, J. P., Berninger, B., & López-Bendito, G.
- Affiliations
- Universitat de Miguel Hernández d'Elx (ES)
- Instituto de Neurociencias, Universidad Miguel Hernández-Consejo Superior de Investigaciones Científicas (UMH-CSIC), Sant Joan d’Alacant, Spain.
- King's College London (GB)
- Friedrich-Alexander-Universität Erlangen-Nürnberg (DE)
- Instituto Cajal, CSIC, Madrid, Spain.
- ORCID
- Venue
- Science Advances
- Published
- 2021-04-09
- Volume
- 7
- Issue
- 15
- ISSN
- 2375-2548 (ISSN-L)
- PMC
- PMC8026135
- OpenAlex
- W3150234287
- Cited by
- 117
- References
- 56
- Citations by year
- 2026: 16 · 2025: 24 · 2024: 19 · 2023: 22 · 2022: 21 · 2021: 14 · 2020: 1
- FWCI
- 6.86
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Science Advances (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion)
- Funders
- H2020 European Research Council (647012)
- Generalitat Valenciana (PROMETEO/2017/149)
- Agencia Estatal de Investigación (PGC2018-096631-B-I00)
- Topics
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
- Keywords
- astrocytes, neurons, regional identity, gene expression signatures, epigenetic signatures, neocortex, thalamus, thalamic nuclei, progenitor cells, clonal analysis
- MeSH terms
- Astrocytes, Neurons, Thalamus, Neocortex, Epigenomics
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