Activation of proto-oncogenes by disruption of chromosome neighborhoods
Hnisz, Denes, Weintraub, Abraham S., Day, Daniel S., Valton, Anne-Laure, Bak, Rasmus O., Li, Charles H., Goldmann, Johanna, Lajoie, Bryan R., Fan, Zi Peng, Sigova, Alla A., Reddy, Jessica, Borges-Rivera, Diego, Lee, Tong Ihn, Jaenisch, Rudolf, Porteus, Matthew H., Dekker, Job, Young, Richard A.·2016·Science
Cited by (999)
Items 501–600 of 999
- Genome-wide methylome and chromatin interactome identify abnormal enhancer to be risk factor of breast cancerYuan Wang, Dapeng Hao, Jingjing Li, Li Wang, Lijun Di · 2017 · Oncotarget
- A pan-cancer analysis reveals CHD1L as a prognostic and immunological biomarker in several human cancersMohamed A. Soltan, Muhammad Alaa Eldeen, Refaat Ali Eid, Najiah M. Alyamani, Leena S. Alqahtani, Sarah M. Albogami, Ibrahim Jafri, Moon Nyeo Park, Ghadi Alsharif, Eman Fayad et al. · 2023 · Frontiers in Molecular Biosciences
- Spatial and clonality-resolved 3D cancer genome alterations reveal enhancer-hijacking as a potential prognostic marker for colorectal cancerKyukwang Kim, Mooyoung Kim, Andrew Lee, Sang‐Hyun Song, Jun‐Kyu Kang, Junghyun Eom, Gyeong Hoon Kang, Jeong Mo Bae, Sunwoo Min, Yeon Soo Kim et al. · 2023 · Cell Reports
- Condensin I folds the Caenorhabditis elegans genomeMoushumi Das, Jennifer I. Semple, Anja Haemmerli, Valeriia Volodkina, Janik Scotton, Todor Gitchev, Ahrmad Annan, Julie Campos, Cyril Statzer, Alexander Dakhovnik et al. · 2024 · Nature Genetics
- Dynamic alternations of three-dimensional chromatin architecture contribute to phenotypic characteristics of breast muscle in chickenZhang Wang, Wei-Hua Tian, Yu-Long Guo, Dan-Dan Wang, Yanyan Zhang, Yi-Hao Zhi, Dong-Hua Li, Wen-Ting Li, Zhuan-Jian Li, R. Jiang et al. · 2024 · Communications Biology
- Super-enhancer omics in stem cellHongying Ma, Jian Qu, Zicheng Pang, Jian Luo, Min Yan, Wei-Xin Xu, Haihui Zhuang, Linxin Liu, Qiang Qu · 2024 · Molecular Cancer
- A functional variant in the boundary of a topological association domain is associated with pancreatic cancer riskShufang Mei, Juntao Ke, Jianbo Tian, Pingting Ying, Nan Yang, Xiaoyang Wang, Danyi Zou, Xiating Peng, Yang Yang, Ying Zhu et al. · 2019 · Molecular Carcinogenesis
- BAT Hi-C maps global chromatin interactions in an efficient and economical wayJie Sheng Huang, Yongpeng Jiang, Haonan Zheng, Xiong Ji · 2019 · Methods
- Engineering three-dimensional genome foldingDi Zhang, Jessica C. Lam, Gerd A. Blobel · 2021 · Nature Genetics
- Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformationKevin Bradley Dsouza, Alexandra Maslova, Ediem Al-Jibury, Matthias Merkenschlager, Vijay K. Bhargava, Maxwell W. Libbrecht · 2022 · Nature Communications
- Cannabis- and Substance-Related Carcinogenesis in Europe: A Lagged Causal Inferential Panel Regression StudyAlbert Stuart Reece, Kellie Bennett, Gary Kenneth Hulse · 2023 · Journal of Xenobiotics
- Spring Model – Chromatin Modeling Tool Based on OpenMMMichał Kadlof, Julia Różycka, Dariusz Plewczyński · 2019 · Methods
- Core-binding factor leukemia hijacks the T-cell–prone PU.1 antisense promoterEmiel van der Kouwe, Gerwin Heller, Akos Gabor Czibere, John Anto Pulikkan, Christiane Agreiter, Lucio Hernán Castilla, Ruud Delwel, Annalisa Di Ruscio, Alexander K. Ebralidze, M. Forte et al. · 2021 · Blood
- TRIM28 is an essential regulator of three-dimensional chromatin state underpinning CD8+ T cell activationKun Wei, Ruifeng Li, Xiaohong Zhao, Bowen Xie, Tian Xie, Qinli Sun, Yongzhen Chen, Peng Wei, Wei Xu, Xinyi Guo et al. · 2025 · Nature Communications
- 3D Genome Organization: Causes and Consequences for DNA Damage and RepairÀnnia Carré Simon, Emmanuelle Fabre · 2021 · Genes
- Integrative Identification by Hi-C Revealed Distinct Advanced Structural Variations in Lung Adenocarcinoma TissueTingting Song, Menglin Yao, Ying Yang, Zhiqiang Liu, Li Zhang, Weimin Li · 2023 · Phenomics
- Disruption of regulatory domains and novel transcripts as disease‐causing mechanismsLila Allou, Stefan Mundlos · 2023 · BioEssays
- Regulation and therapeutic potentials of microRNAs to non-small cell lung cancerMai Thi Le, Huyen-Thu Nguyen, Xuan‐Hung Nguyen, Xuan-Hai Do, Thị Thanh Bình Nguyễn, Ha Thi Ngoc Nguyen, Uyen Thi Trang Than, Thanh Hong Nguyen · 2023 · Heliyon
- The PTM profiling of CTCF reveals the regulation of 3D chromatin structure by O-GlcNAcylationXiuxiao Tang, Pengguihang Zeng, Kezhi Liu, Qing Li, Yifei Sun, Xinyi Liu, Lizi Lu, Chao Wei, Jia Wang, Shaoshuai Jiang et al. · 2024 · Nature Communications
- EpigeneticsRajan Jain, Jonathan A. Epstein · 2024 · Advances in experimental medicine and biology
- CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopmentJie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu et al. · 2024 · Nature Communications
- A PRE loop at the dac locus acts as a topological chromatin structure that restricts and specifies enhancer–promoter communicationSandrine Denaud, Marion Bardou, Giorgio Lucio Papadopoulos, Stefan Grob, Marco Di Stefano, Gonzalo Sabarís, Marcelo Nöllmann, Bernd Schuettengruber, Giacomo Cavalli · 2024 · Nature Structural & Molecular Biology
- Genomic Alterations of Non-Coding Regions Underlie Human Cancer: Lessons from T-ALLAdrian Rivera-Reyes, Katharina E. Hayer, Craig H. Bassing · 2016 · Trends in Molecular Medicine
- Dynamics of transcriptional enhancers and chromosome topology in gene regulationMoe Yokoshi, Takashi Fukaya · 2019 · Development Growth & Differentiation
- Deep Learning of Sequence Patterns for CCCTC-Binding Factor-Mediated Chromatin Loop FormationShuzhen Kuang, Liangjiang Wang · 2020 · Journal of Computational Biology
- Hi-C as a molecular rangefinder to examine genomic rearrangementsKyukwang Kim, Mooyoung Kim, Yubin Kim, Dong-Sung Lee, Inkyung Jung · 2021 · Seminars in Cell and Developmental Biology
- Induction of a chromatin boundary in vivo upon insertion of a TAD borderAndréa Willemin, Lucille Lopez‐Delisle, Christopher Chase Bolt, Marie-Laure Gadolini, Denis Duboule, Eddie Rodríguez-Carballo · 2021 · PLoS Genetics
- Cis-regulatory landscapes in development and evolutionIgnacio Maeso, Rafael D. Acemel, José Luis Gómez-Skármeta · 2016 · Current Opinion in Genetics & Development
- CTCF knockout reveals an essential role for this protein during the zebrafish developmentFrancisco Carmona-Aldana, Cecilia Zampedri, Fernando Suaste-Olmos, Adrián Rafael Murillo‐de‐Ozores, Georgina Guerrero, Rodrigo G. Arzate‐Mejía, Ernesto Maldonado, Rosa Estela Navarro, Jesús Chimal‐Monroy, Félix Recillas Targa · 2018 · Mechanisms of Development
- The role of noncoding mutations in blood cancersSunniyat Rahman, Marc R. Mansour · 2019 · Disease Models & Mechanisms
- Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysisIrene Mota-Gómez, J. A. Rodríguez, Shannon M Dupont, Oscar Lao, J. Jedamzick, Ralf Kuhn, S. Lacadie, S. A. Garcia-Moreno, Alicia Hurtado, R. D. Acemel et al. · 2022 · bioRxiv
- Integrative Analysis of Genome, 3D Genome, and Transcriptome Alterations of Clinical Lung Cancer SamplesTingting Li, Ruifeng Li, Xuan Dong, Lin Shi, Miao Lin, T. Peng, Pengze Wu, Yu-Ting Liu, Xiaoting Li, Xuheng He et al. · 2021 · Genomics, Proteomics & Bioinformatics
- Seeing the forest through the trees: prioritising potentially functional interactions from Hi-CNing Liu, Wai Yee Low, Hamid Alinejad‐Rokny, Stephen Pederson, Timothy J. Sadlon, Simon Charles Barry, James Breen · 2021 · Epigenetics & Chromatin
- A comprehensive review of bioinformatics tools for chromatin loop callingLi Liu, Kaiyuan Han, Huimin Sun, Lu Han, Dong Gao, Qilemuge Xi, Lirong Zhang, Hao Lin · 2023 · Briefings in Bioinformatics
- Three-dimensional and single-cell sequencing of liver cancer reveals comprehensive host-virus interactions in HBV infectionMengbiao Guo, Zhicheng Yao, Chen Jiang, Zhou Songyang, Lian Gan, Yuanyan Xiong · 2023 · Frontiers in Immunology
- Epromoters are new players in the regulatory landscape with potential pleiotropic rolesJuliette Malfait, Jing Wan, Salvatore Spicuglia · 2023 · BioEssays
- Isoforms of the TAL1 transcription factor have different roles in hematopoiesis and cell growthAveksha Sharma, Shani Mistriel-Zerbib, Rauf Ahmad Najar, Eden Engal, Mercedes Bentata, Nadeen Taqatqa, Sara Dahan, Klil Cohen, Shiri Jaffe‐Herman, Ophir Geminder et al. · 2023 · PLoS Biology
- Phase separation is regulated by post-translational modifications and participates in the developments of human diseasesWeibo Zhang, Zhengfeng Li, Xianju Wang, Ting Sun · 2024 · Heliyon
- CRISPR Screening of Transcribed Super-Enhancers Identifies Drivers of Triple-Negative Breast Cancer ProgressionMichael W. Lewis, Caitlin M. King, Kamila Wiśniewska, Matthew J. Regner, Alisha R. Coffey, Michael R. Kelly, Raúl Méndez-Giráldez, Eric S. Davis, Douglas H. Phanstiel, Hector L. Franco · 2024 · Cancer Research
- Advances in Genomic Profiling and Analysis of 3D Chromatin Structure and InteractionBinhua Tang, Xiaolong Cheng, Yunlong Xi, Zixin Chen, Yufan Zhou, Victor X. Jin · 2017 · Genes
- Structural Variants as a Basis for Targeted Therapies in Hematological MalignanciesJudith Schütte, Julia Reusch, Cyrus Khandanpour, Christine Eisfeld · 2019 · Frontiers in Oncology
- Functional signatures of evolutionarily young CTCF binding sitesDhoyazan Azazi, Jonathan M. Mudge, Duncan T. Odom, Paul Flicek · 2020 · BMC Biology
- Regulation of Gene Expression and the Elucidative Role of CRISPR-Based Epigenetic Modifiers and CRISPR-Induced Chromosome Conformational ChangesAndrea Martella, David I. Fisher · 2021 · The CRISPR Journal
- Super-Enhancers in the Regulation of Gene Transcription: General Aspects and Antitumor TargetsAlexandra V. Bruter, Mariya D. Rodionova, Ekaterina A. Varlamova, Alexander Albertovich Shtil · 2021 · Acta Naturae
- A Cohesin Traffic Pattern Genetically Linked to Gene RegulationAnne-Laure Valton, Job Dekker, Sergey V. Venev, Barbara Mair, Eraj Shafiq Khokhar, Athma A. Pai, Jason Moffat · 2021 · HAL
- Sparse conserved under-methylated CpGs are associated with high-order chromatin structureXueqiu Lin, Jianzhong Su, Kaifu Chen, Benjamin A.T. Rodriguez, Wei Li · 2017 · Genome biology
- Disruption of a −35 kb Enhancer Impairs CTCF Binding and MLH1 Expression in Colorectal CellsQing Liu, Julie A.I. Thoms, Andrea C. Nunez, Yizhou Huang, Kathy Knezevic, Deborah Packham, Rebecca C. Poulos, Rachel Williams, Dominik Beck, Nicholas John Hawkins et al. · 2018 · Clinical Cancer Research
- The 3D genome: From fundamental principles to disease and cancerDavid Umlauf, Raphaël Mourad · 2018 · Seminars in Cell and Developmental Biology
- Non-Canonical Functions of the Gamma-Tubulin Meshwork in the Regulation of the Nuclear ArchitectureMatthieu Corvaisier, María Alvarado-Kristensson · 2020 · Cancers
- Computational characterization of domain‐segregated 3D chromatin structure and segmented DNA methylation status in carcinogenesisYue Xue, Ying Yang, Hao Tian, Hui Quan, Sirui Liu, Ling Zhang, Lu Yang, Haichuan Zhu, Hong Wu, Yi Qin Gao · 2021 · Molecular Oncology
- A cohesin traffic pattern genetically linked to gene regulationAnne-Laure Valton, Sergey V. Venev, Barbara Mair, Eraj Shafiq Khokhar, Amy H. Y. Tong, Matej Ušaj, Katherine S. K. Chan, Athma A. Pai, Jason Moffat, Job Dekker · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Long G4-rich enhancers target promoters via a G4 DNA-based mechanismJeffrey D. DeMeis, Justin T. Roberts, Haley A Delcher, Noel L Godang, Alexander B. Coley, Cana L. Brown, Michael H Shaw, Sayema Naaz, Ayush Dahal, Shahem Y Alqudah et al. · 2024 · Nucleic Acids Research
- Cytogenetics and Cytogenomics in Clinical Diagnostics: Genome Architecture, Structural Variants, and Translational ApplicationsConcetta Federico, Desiree Brancato, Francesca Bruno, Elvira Coniglio, Valentina Sturiale, Salvatore Saccone · 2025 · Genes
- Super-enhancers in tumors: unraveling recent advances in their role in Oncogenesis and the emergence of targeted therapiesYu‐meng Ji, Baixue Li, Rongjin Lin, Jing Tang Yuan, Yang Han, Yuping Du, Yang Zhao · 2025 · Journal of Translational Medicine
- A (3D-Nuclear) Space Odyssey: Making Sense of Hi-C MapsIrene Mota-Gómez, Darío G. Lupiáñez · 2019 · Genes
- Spatial genome exploration in the context of cognitive and neurological diseasePrashanth Rajarajan, Tyler M. Borrman, Will Liao, Sergio Espeso‐Gil, Sandhya Chandrasekaran, Yan Jiang, Zhiping Weng, Kristen Brennand, Schahram Akbarian · 2019 · Current Opinion in Neurobiology
- Mapping and Making Sense of Noncoding Mutations in the GenomeJiekun Yang, Mazhar Adli · 2019 · Cancer Research
- Higher-order Chromosome Structures Investigated by Polymer Physics in Cellular Morphogenesis and DifferentiationAndrea Esposito, Andrea M. Chiariello, Mattia Conte, Luca Fiorillo, Francesco Musella, Renato Sciarretta, Simona Bianco · 2019 · Journal of Molecular Biology
- Toward an understanding of the relation between gene regulation and 3D genome organizationHao Tian, Ying Yang, Sirui Liu, Hui Quan, Yi Qin Gao · 2020 · Quantitative Biology
- Functional impact of cancer-associated cohesin variants on gene expression and cellular identityNatalie Rittenhouse, Zachary M. Carico, Ying Frances Liu, Holden C. Stefan, Nicole L. Arruda, Junjie Zhou, Jill M. Dowen · 2021 · Genetics
- Loss of 9p21 Regulatory Hub Promotes Kidney Cancer Progression by Upregulating HOXB13Maria Francesca Baietti, Peihua Zhao, Jonathan Crowther, Raj Nayan Sewduth, Linde De Troyer, Maria Dêbiec‐Rychter, Anna A. Sablina · 2021 · Molecular Cancer Research
- Deciphering the Complexity of 3D Chromatin Organization Driving Lymphopoiesis and Lymphoid MalignanciesLaurianne Scourzic, Eralda Salataj, Effie Apostolou · 2021 · Frontiers in Immunology
- The two waves in single-cell 3D genomicsSergey V. Ulianov, Sergey V. Razin · 2021 · Seminars in Cell and Developmental Biology
- The Interplay of Transcription and Genome Topology Programs T Cell Development and DifferentiationXin Zhao, Shaoqi Zhu, Weiqun Peng, Hai‐Hui Xue · 2022 · The Journal of Immunology
- cis-Regulatory Circuits Regulating NEK6 Kinase Overexpression in Transformed B Cells Are Super-Enhancer IndependentYue Lin Huang, Olivia I. Koues, Jiangyang Zhao, Regina Liu, Sarah Pyfrom, Jacqueline E. Payton, Eugene M. Oltz · 2017 · Cell Reports
- Analysis of high-resolution 3D intrachromosomal interactions aided by Bayesian network modelingXizhe Zhang, Sergio Branciamore, Grigoriy Gogoshin, Andréi S. Rodin, Arthur D. Riggs · 2017 · Proceedings of the National Academy of Sciences
- Harnessing natural variation to identify cis regulators of sex-biased gene expression in a multi-strain mouse liver modelBryan J. Matthews, Tisha Melia, David J. Waxman · 2021 · PLoS Genetics
- Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograftMikhail G. Dozmorov, Maggie A. Marshall, Narmeen S Rashid, Jacqueline M. Grible, Aaron D. Valentine, Amy L. Olex, Kavita Murthy, Abhijit Chakraborty, Joaquin Reyna, Daniela Salgado Figueroa et al. · 2023 · Scientific Reports
- Methylation-directed regulatory networks determine enhancing and silencing of mutation disease driver genes and explain inter-patient expression variationYifat Edrei, Revital Levy, Daniel Kaye, Anat Marom, Bernhard Radlwimmer, Asaf Hellman · 2023 · Genome biology
- Rewiring cancer: 3D genome determinants of cancer hallmarksMaria Elisa Amodeo, Christine Elissa Eyler, Sarah E. Johnstone · 2025 · Current Opinion in Genetics & Development
- Nuclear organization mediates cancer-compromised genetic and epigenetic controlSayyed Kaleem Zaidi, Andrew J. Fritz, Kirsten M. Tracy, Jonathan A. R. Gordon, Coralee E. Tye, Joseph R. Boyd, André J. van Wijnen, Jeffrey A. Nickerson, A. N. Imbalzano, Jane B. Lian et al. · 2018 · Advances in Biological Regulation
- Computational methods for analyzing genome-wide chromosome conformation capture dataChiara Nicoletti, Mattia Forcato, Silvio Bicciato · 2018 · Current Opinion in Biotechnology
- Role of the cellular factor CTCF in the regulation of bovine leukemia virus latency and three-dimensional chromatin organizationMaxime Bellefroid, Anthony Rodari, Mathilde Galais, Peter H.L. Krijger, Sjoerd J. D. Tjalsma, Lorena Nestola, Estelle Plant, Erica S.M. Vos, Sara Cristinelli, Benoît Van Driessche et al. · 2022 · Nucleic Acids Research
- Genetic and Epigenetic Alterations in CancerBin Tean Teh, Eric R. Fearon · 2020 · Elsevier eBooks
- A de novo Transcription-Dependent TAD Boundary Underpins Critical Multiway Interactions During Antibody Class Switch RecombinationJulia Costea, Ursula E. Schoeberl, Daniel Malzl, Maximilian von der Linde, Johanna Fitz, Ankit Gupta, Marina Makharova, Anton A. Goloborodko, Rushad Pavri · 2022 · Molecular Cell
- Cancer induction and suppression with transcriptional control and epigenome editing technologiesShota Nakade, Takashi Yamamoto, Tetsushi Sakuma · 2017 · Journal of Human Genetics
- Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemiaManabu Kusakabe, Ann Chong Sun, Kateryna Tyshchenko, Rachel Wong, Aastha Nanda, Claire Shanna, Samuel Gusscott, Elizabeth A. Chavez, Alireza Lorzadeh, Alice Zhu et al. · 2019 · Nature Communications
- Visualising three-dimensional genome organisation in two dimensionsElizabeth Ing‐Simmons, Juan M. Vaquerizas · 2019 · Development
- Arginine Methyltransferase PRMT7 Deregulates Expression of RUNX1 Target Genes in T-Cell Acute Lymphoblastic LeukemiaLaura Oksa, Artturi Mäkinen, Atte Nikkilä, Noora Hyvärinen, Saara Laukkanen, Anne Rokka, Pekka Haapaniemi, Masafumi Seki, Junko Takita, Otto Kauko et al. · 2022 · Cancers
- Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancerRebecca F. Lowdon, Ting Wang · 2017 · PLoS ONE
- Three‐dimensional genome architecture in health and diseaseJean‐François Ouimette, Claire Rougeulle, Reiner A. Veitia · 2018 · Clinical Genetics
- Modeling three-dimensional genomic organization in evolution and pathogenesisAlon Diament, Tamir Tuller · 2018 · Seminars in Cell and Developmental Biology
- Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemiaLaura Belver, Robert Alberó, Adolfo A. Ferrando · 2021 · Trends in Immunology
- 3D genome alterations and editing in pathologyEugenia A. Tiukacheva, Sergey V. Ulianov, Anna A. Karpukhina, Sergey V. Razin, Yegor S Vassetzky · 2023 · Molecular Therapy
- Locus folding mechanisms determine modes of antigen receptor gene assemblyBrittney M. Allyn, Katharina E. Hayer, Clément Oyeniran, Vincent K. Nganga, Kyutae David Lee, Bikash Mishra, Ahmet Saçan, Eugene M. Oltz, Craig H. Bassing · 2023 · The Journal of Experimental Medicine
- Evolutionary divergence in CTCF-mediated chromatin topology drives transcriptional innovation in humansXia Wu, Dan Xiong, Rong Liu, Xingqiang Lai, Yuhan Tian, Ziying Xie, Li Chen, Lanqi Hu, Jingjing Duan, Xinyu Gao et al. · 2025 · Nature Communications
- Open Structural Data in Precision MedicineRuth Nussinov, Hyunbum Jang, Guy Nir, Chung‐Jung Tsai, Feixiong Cheng · 2022 · Annual Review of Biomedical Data Science
- Capturing the hierarchically assorted modules of protein–protein interactions in the organized nucleomeShuaijian Dai, Shichang Liu, Chen Zhou, Fengchao Yu, Guang Zhu, Wenhao Zhang, Haiteng Deng, Alma L. Burlingame, Weichuan Yu, Tingliang Wang et al. · 2023 · Molecular Plant
- CTCF fences make good neighboursIvan V. Krivega, Ann Dean · 2017 · Nature Cell Biology
- Phenotypic interpretation of complex chromosomal rearrangements informed by nucleotide-level resolution and structural organization of chromatinCinthya J. Zepeda‐Mendoza, Alexandra G Bardon, Tammy Kammin, David J. Harris, Helen Cox, Claire E. Redin, Zehra Ordulu, Michael E. Talkowski, Cynthia Casson Morton · 2018 · European Journal of Human Genetics
- An evolutionary perspective of regulatory landscape dynamics in development and diseaseMartin Franke, José Luis Gómez-Skármeta · 2018 · Current Opinion in Cell Biology
- Chromatin Domains Go on Repeat in DiseaseBenoit G. Bruneau, Elphège Pierre Nora · 2018 · Cell
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifsJonas Ibn-Salem, Miguel Angel Andrade-Navarro · 2019 · BMC Genomics
- Competent for commitment: you've got to have heart!Rajan Jain, Jonathan A. Epstein · 2018 · Genes & Development
- Approaches for studying epigenetic aspects of the human genomeTigran A. Harutyunyan, Galina G Hovhannisyan · 2021 · Elsevier eBooks
- In vivo interrogation of regulatory genomes reveals extensive quasi-insufficiency in cancer evolutionAnja Fischer, Robert Lersch, Niklas de Andrade Krätzig, Alexander Strong, Mathias Friedrich, Julia Weber, Thomas Engleitner, Rupert Öllinger, Hsi-Yu Yen, Ursula Kohlhofer et al. · 2023 · Cell Genomics
- DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activityHeather M. Raimer, Pei‐Chi Hou, Anna R. Bartosik, Naomi D. Atkin, Lixin Wang, Zhenjia Wang, Aakrosh Ratan, Chongzhi Zang, Yuh‐Hwa Wang · 2024 · Nucleic Acids Research
- Oncogenic Enhancers in LeukemiaRoger Mulet‐Lazaro, Ruud Delwel · 2024 · Blood Cancer Discovery
- 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C dataIbai Irastorza-Azcárate, Rafael D. Acemel, Juan J. Tena, Ignacio Maeso, José Luis Gómez-Skármeta, Damien Paul Devos · 2018 · PLoS Computational Biology
- Pan-cancer analysis of somatic mutations and epigenetic alterations in insulated neighbourhood boundariesPietro Pinoli, Eirini Stamoulakatou, An-phi Nguyen, María Rodríguez Martínez, Stefano Ceri · 2020 · PLoS ONE